#=GF ID   CM1
#=GF AC   PF03026.19
#=GF DE   Influenza C virus M1 protein
#=GF AU   Griffiths-Jones SR;0000-0001-6043-807X
#=GF SE   Pfam-B_1290 (release 6.4)
#=GF GA   27.00 27.00;
#=GF TC   209.90 209.60;
#=GF NC   25.00 18.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 --cpu 4 -E 1000 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   3404579
#=GF RT   Evidence that the matrix protein of influenza C virus is coded
#=GF RT   for by a spliced mRNA. 
#=GF RA   Yamashita M, Krystal M, Palese P; 
#=GF RL   J Virol 1988;62:3348-3355.
#=GF DR   INTERPRO; IPR004271;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family represents the matrix 1 protein of influenza C
#=GF CC   virus. The protein is the product of a spliced mRNA. Small
#=GF CC   quantities of the unspliced mRNA are found in the cell
#=GF CC   additionally encoding the M2 protein (see Pfam:PF03021).
#=GF SQ   6
#=GS A0A097F2S5_9ORTO/1-235  AC A0A097F2S5.1
#=GS A0A0E4C2X2_9ORTO/1-235  AC A0A0E4C2X2.1
#=GS MAT_INCAA/1-235         AC Q6I7B9.2
#=GS A8E061_INCJH/1-235      AC A8E061.1
#=GS A0A097F2T5_9ORTO/1-235  AC A0A097F2T5.1
#=GS A8E062_INCJH/1-235      AC A8E062.1
A0A097F2S5_9ORTO/1-235             MAHEILIAETEAFLKNVAPETRTAIISAITGGKSACKSAAKLIKNEHLPLMSGEATTMHIVMRCLYPEIKPWKKASDMLNKATSSLKKSEGRDIRKQMKAAGDFLGVESMMKMRAFRDDQIMEMVEEVYDHPDDYTPDIRIGTITAWLRCKNKKSERYRSNVSESGRTALKIHEVRKASTAMNEIAGITGLGEEALSLQRQTESLAILCNHTFGSNIMRPHLEKAIKGVEGRVGE..
A0A0E4C2X2_9ORTO/1-235             MAQEQLLAELEGYLRGVNPMTRQTIMRSAKGGMDSAKEAAKAAKKGEMQLTSGESIVVHICLRAMYPGIKPWSEAKKDLDKATEGLSGKDSKNIRKALRKAGDLTGIKEMMMMYEMREDKKAEMVEQIYDDPEDFTEDVRLGTVAAWLQCKNKRSEKYHHKMSMSGSTALALGDAQKAGMAIENMASVVPMKKEAQALHKDAEVLIELARIAYGSRAMEGHLQNAMDGIGSKV--sg
MAT_INCAA/1-235                    MAHEILIAETEAFLKNVAPETRTAIISAITGGKSACKSAAKLIKNEHLPLMSGEATTMHIVMRCLYPEIKPWKKASDMLNKATSSLKKSEGRDIRKQMKAAGDFLGVESMMKMRAFRDDQIMEMVEEVYDHPDDYTPDIRIGTITAWLRCKNKKSERYRSNVSESGRTALKIHEVRKASTAMNEIAGITGLGEEALSLQRQTESLAILCNHTFGSNIMRPHLEKAIKGVEGRVGE..
A8E061_INCJH/1-235                 MAHEILIAEAEAFLKNVAPETRTAIISAITGGKSACKSAAKLIKNEHLPLMSGEATTMHIVMRCLYPEIKPWKKASDMLNKATSSLKKSEGRDIRKQMKAAGDFLGVESMMKMRAFRDDQIMEMVEEVYDHPDDYTPDIRIGTITAWLRCKNKKSERYRSNVSESGRTALKIHEVRKASTAMNEIAGITGLGEEALSLQRQTESLAILCNHTFGSNIMRPHLEKAIKGVEGRVGE..
A0A097F2T5_9ORTO/1-235             MAHEILIAETEAFLKNVAPETRTAIISAITGGKSACKSAAKLIKNEHLPLMSGEATTMHIVMRCLYPEIKPWKKASDMLNKATSSLKKSEGRDIRKQMKAAGDFLGVESMMKMRAFRDDQIMEMVEEVYDHPDDYTPDIRIGTITAWLRCKNKKSERYRSNVSESGRTALKIHEVRKASTAMNEIAGITGLGEEALSLQRQTESLAILCNHTFGSNIMRPHLEKAIKGVEGRVGE..
A8E062_INCJH/1-235                 MAHEILIAEAEAFLKNVAPETRTAIISAITGGKSACKSAAKLIKNEHLPLMSGEATTMHIVMRCLYPEIKPWKKASDMLNKATSSLKKSEGRDIRKQMKAAGDFLGVESMMKMRAFRDDQIMEMVEEVYDHPDDYTPDIRIGTITAWLRCKNKKSERYRSNVSESGRTALKIHEVRKASTAMNEIAGITGLGEEALSLQRQTESLAILCNHTFGSNIMRPHLEKAIKGVEGRVGE..
#=GC seq_cons                      MAHEILIAEsEAFLKNVAPETRTAIISAITGGKSACKSAAKLIKNEHLPLMSGEATTMHIVMRCLYPEIKPWKKASDMLNKATSSLKKSEGRDIRKQMKAAGDFLGVESMMKMRAFRDDQIMEMVEEVYDHPDDYTPDIRIGTITAWLRCKNKKSERYRSNVSESGRTALKIHEVRKASTAMNEIAGITGLGEEALSLQRQTESLAILCNHTFGSNIMRPHLEKAIKGVEGRVGE..
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