#=GF ID   CNV-Replicase_N
#=GF AC   PF16688.9
#=GF DE   Replicase polyprotein N-term from Coronavirus nsp1
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   pdb_3zbd
#=GF GA   27.10 27.10;
#=GF TC   29.30 78.50;
#=GF NC   26.80 22.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   23269811
#=GF RT   Structure of alphacoronavirus transmissible gastroenteritis
#=GF RT   virus nsp1 has implications for coronavirus nsp1 function and
#=GF RT   evolution.
#=GF RA   Jansson AM;
#=GF RL   J Virol. 2013;87:2949-2955.
#=GF DR   INTERPRO; IPR032039;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   CNV-Replicase_N is the N-terminal domain of a family of ssRNA
#=GF CC   positive-stranded porcine transmissible gastroenteritis
#=GF CC   coronaviruses.  the domain folds into a six-stranded beta-barrel
#=GF CC   fold with a long alpha helix on the rim of the barrel. This fold
#=GF CC   is shared with SARS-CoV nsp1 [1].
#=GF SQ   13
#=GS R1AB_FIPV/1-108         AC Q98VG9.2
#=GS A0A125R5A4_9ALPC/1-108  AC A0A125R5A4.1
#=GS R1A_CVPPU/1-108         AC P0C6V2.1
#=GS A0A172B3C8_9ALPC/1-109  AC A0A172B3C8.1
#=GS R1AB_CVPPU/1-108        AC P0C6Y5.1
#=GS C6GHB5_9ALPC/1-108      AC C6GHB5.1
#=GS C6GHB6_9ALPC/1-108      AC C6GHB6.1
#=GS A0A120I2U3_9ALPC/1-108  AC A0A120I2U3.1
#=GS A0A172B201_9ALPC/1-109  AC A0A172B201.1
#=GS D9J202_9ALPC/1-109      AC D9J202.1
#=GS D9J203_9ALPC/1-109      AC D9J203.1
#=GS A0A125R5A3_9ALPC/1-108  AC A0A125R5A3.1
#=GS V9PIT1_9ALPC/1-108      AC V9PIT1.1
R1AB_FIPV/1-108                    MSSKQFKILVNEDYQVNVPSL.PFR.DALQEIKYCYRNGFDGYVFVPEYRRDLVDCNRKDHYVIGVLGNGISDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKFARTG...
A0A125R5A4_9ALPC/1-108             MSSKQFKILVNEDYQVNVPSH.PFR.DVVQEIKYCYRNGFDGYVFVPEYRRDLVDCNRKDHYVIGVLGNGISDLKPVLLTEPSVMLQGFLLRTNCNGVLEDFDLKIARTG...
R1A_CVPPU/1-108                    MSSKQFKILVNEDYQVNVPSL.PIR.DVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNGVSDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIARTG...
A0A172B3C8_9ALPC/1-109             MVFKHFRILVNEDQEITPRGY.ENRlDCQRALKQCWLSGFNGYVFVPEYSRDLLTGCREQWYVFGVFGANDYVIKPCMLEEQSVNLQGFIVLSDANGVEEDFYLSLS---tyg
R1AB_CVPPU/1-108                   MSSKQFKILVNEDYQVNVPSL.PIR.DVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNGVSDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIARTG...
C6GHB5_9ALPC/1-108                 MSSKQFKILVNEDYQVNVPSL.LFR.DVLQEVKYCYRNGFEGYVFVPEYRRDLVDCDRKDHYVIGVLGNGISDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIARTG...
C6GHB6_9ALPC/1-108                 MSSKQFKILVNEDYQVNVPSL.LFR.DVLQEVKYCYRNGFEGYVFVPEYRRDLVDCDRKDHYVIGVLGNGISDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIARTG...
A0A120I2U3_9ALPC/1-108             MSSKQFKILVNEDYQVNVPSL.PIR.DVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNGVSDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDFKIARTG...
A0A172B201_9ALPC/1-109             MVFKHFRILVNEDQEITPRGY.ENRlDCQRALKQCWLSGFNGYVFVPEYSRDLLTGCREQWYVFGVFGANDYVIKPCMLEEQSVNLQGFIVLSDANGVEEDFYLSLS---tyg
D9J202_9ALPC/1-109                 MGSKHFKILVVEDSGITTHGYkSYT.DCSNALKLCWHVGFDGYVFVPEYSRDLLSGCREQEYVFGVFGANDNVIKPCFLDVQTANLQGFIVRSGAIGVEEDFYLRINT--ng.
D9J203_9ALPC/1-109                 MGSKHFKILVVEDSGITTHGYkSYT.DCSNALKLCWHVGFDGYVFVPEYSRDLLSGCREQEYVFGVFGANDNVIKPCFLDVQTANLQGFIVRSGAIGVEEDFYLRINT--ng.
A0A125R5A3_9ALPC/1-108             MSSKQFKILVNEDYQVNVPSH.PFR.DVVQEIKYCYRNGFDGYVFVPEYRRDLVDCNRKDHYVIGVLGNGISDLKPVLLTEPSVMLQGFLLRTNCNGVLEDFDLKIARTG...
V9PIT1_9ALPC/1-108                 MSSKQFKILVNEDYQVNVPSL.PFR.DALQEIKYCYRNGFDGYVFVPEYRRDLVDCNRKDHYVIGVLGNGISDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKFARTG...
#=GC seq_cons                      MSSKQFKILVNEDYQVNVPSh.saR.DslQElKYCYRNGF-GYVFVPEYpRDLVDCsRKDHYVIGVLGNGlSDLKPVLLTEPSVMLQGFIVRuNCNGVLEDFDLKIARTG...
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