GenomeNet

Database: Pfam
Entry: CdiA_helical
LinkDB: CdiA_helical
Original site: CdiA_helical 
#=GF ID   CdiA_helical
#=GF AC   PF21483.1
#=GF DE   Toxin CdiA-like, helical domain
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF AU   Chuguransky S;0000-0002-0520-0736
#=GF SE   ECOD:EF15693
#=GF GA   27.00 27.00;
#=GF TC   34.10 36.60;
#=GF NC   26.50 19.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP   Domain
#=GF RC   Paper describing PDB structure 4g6u
#=GF RN   [1]
#=GF RM   23236156
#=GF RT   Structural basis of toxicity and immunity in contact-dependent
#=GF RT   growth inhibition  (CDI) systems.
#=GF RA   Morse RP, Nikolakakis KC, Willett JL, Gerrick E, Low DA, Hayes
#=GF RA   CS, Goulding CW;
#=GF RL   Proc Natl Acad Sci U S A. 2012;109:21480-21485.
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This entry represents the helical domain of  EC869 CdiA toxin, a
#=GF CC   toxin of the Contact-dependent growth inhibition (CDI) system
#=GF CC   [1]. EC869 appears to function as a Zn2+-dependent DNAse
#=GF CC   degrading the genome of target cells.
#=GF SQ   6
#=GS W1ITV2_9GAMM/82-140         AC W1ITV2.1
#=GS A0A4U0P5H2_9NEIS/693-752    AC A0A4U0P5H2.1
#=GS A0A6B2FNU1_9ENTR/3181-3240  AC A0A6B2FNU1.1
#=GS A0A443IDC5_9GAMM/376-434    AC A0A443IDC5.1
#=GS A0A6I6EH87_9GAMM/3018-3077  AC A0A6I6EH87.1
#=GS A0A2S0PFV5_9NEIS/1-32       AC A0A2S0PFV5.1
W1ITV2_9GAMM/82-140                    MRNEDAKAYVAYWNAIDIAKVDMNSPSWAKFATFAADPENQALLVGGGLLTKDLIK----att
A0A4U0P5H2_9NEIS/693-752               MTMQEAKDFILQENGKDLAMIDQNSPGWMKFVTFVSDPENQVLLVSLGAGAKSLVQWAKA...
A0A6B2FNU1_9ENTR/3181-3240             MTSDEAKAYVQQWNGQDLVNIDVNSAAWMSFASYASDPENQAALASLGMLGKDLIAIAKN...
A0A443IDC5_9GAMM/376-434               MTSDEAKAYVQQWNGQDLANIDVNSPGWTKFAAFASDPENQAMVGSLGLLAKELGA----aai
A0A6I6EH87_9GAMM/3018-3077             MRDDEAKAYVQYWNSQDLTKIDVTTPDWVKFATLVADPENQAMLLSGGLVTKELVQLAR-s..
A0A2S0PFV5_9NEIS/1-32                  ----------------------------MSFVAFVGDPENQLALASLGNAGKELVKLAR-s..
#=GC seq_cons                          Mps-EAKAYVt.WNupDLspIDhNSPuWhKFAoFsuDPENQAhLsSLGhluK-LlphA+.u..
//
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