#=GF ID   CoV_NSP4_N
#=GF AC   PF19217.4
#=GF DE   Coronavirus replicase NSP4, N-terminal
#=GF PI   Corona_NSP4_N;
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF AU   Chuguransky S;0000-0002-0520-0736
#=GF SE   Manual
#=GF GA   25.00 25.00;
#=GF TC   243.10 243.10;
#=GF NC   20.60 20.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   29162711
#=GF RT   Expression and Cleavage of Middle East Respiratory Syndrome
#=GF RT   Coronavirus nsp3-4 Polyprotein Induce the Formation of
#=GF RT   Double-Membrane Vesicles That Mimic Those Associated with
#=GF RT   Coronaviral RNA Replication.
#=GF RA   Oudshoorn D, Rijs K, Limpens RWAL, Groen K, Koster AJ, Snijder
#=GF RA   EJ, Kikkert M, Barcena M;
#=GF RL   mBio. 2017; [Epub ahead of print]
#=GF DR   INTERPRO; IPR043612;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This is the N-terminal domain of the coronavirus nonstructural
#=GF CC   protein 4 (NSP4). NSP4 is encoded by ORF1a/1ab and
#=GF CC   proteolytically released from the pp1a/1ab polyprotein. NSP4 is
#=GF CC   a membrane-spanning protein which is thought to anchor the viral
#=GF CC   replication-transcription complex to modified endoplasmic
#=GF CC   reticulum membranes. This N-terminal region represents the
#=GF CC   membrane spanning region, covering four transmembrane regions
#=GF CC   [1].
#=GF SQ   108
#=GS R1A_SARS2/2788-3142         AC P0DTC1.1
#=GS Q6R1L9_CVHNL/2476-2816      AC Q6R1L9.1
#=GS A0A0U1WHG1_9ALPC/2358-2697  AC A0A0U1WHG1.1
#=GS V9PIT1_9ALPC/2438-2785      AC V9PIT1.1
#=GS B1PHK0_9ALPC/2652-2992      AC B1PHK0.1
#=GS S5YAF0_9ALPC/2584-2923      AC S5YAF0.1
#=GS S5Z1D1_9ALPC/2584-2923      AC S5Z1D1.1
#=GS R1AB_BCHK9/2634-2984        AC P0C6W5.1
#=GS R1A_SARS/2763-3119          AC P0C6U8.1
#=GS Q0Q485_SARS/2761-3115       AC Q0Q485.1
#=GS B1PHI6_9ALPC/2745-3085      AC B1PHI6.1
#=GS B1PHK1_9ALPC/2652-2992      AC B1PHK1.1
#=GS U5LR11_9BETC/2834-3189      AC U5LR11.1
#=GS R1AB_CVM2/2805-3161         AC P0C6X8.1
#=GS A0A088DIE1_9BETC/2927-3283  AC A0A088DIE1.1
#=GS A0A1B3Q5W8_9BETC/2678-3028  AC A0A1B3Q5W8.1
#=GS R1A_BCHK4/2816-3170         AC P0C6T4.1
#=GS R1A_CVH22/2507-2847         AC P0C6U2.1
#=GS T2B9U0_MERS/2771-3126       AC T2B9U0.1
#=GS R1AB_FIPV/2438-2785         AC Q98VG9.2
#=GS R1A_CVMA5/2859-3215         AC P0C6V0.1
#=GS E0ZN51_BCHK9/2629-2979      AC E0ZN51.1
#=GS R9QTB2_SARS/2757-3111       AC R9QTB2.1
#=GS H9BR34_9NIDO/1926-2295      AC H9BR34.1
#=GS R1AB_CVPPU/2413-2760        AC P0C6Y5.1
#=GS A0A1X9JQL5_9ALPC/2382-2733  AC A0A1X9JQL5.1
#=GS A0A4D6FWB1_9GAMC/2166-2522  AC A0A4D6FWB1.1
#=GS A0A125R5A4_9ALPC/2425-2772  AC A0A125R5A4.1
#=GS A0A140ESF0_9NIDO/2023-2392  AC A0A140ESF0.1
#=GS A0A0K1Z0N1_SARS/2722-3119   AC A0A0K1Z0N1.1
#=GS Q6R1L8_CVHNL/2476-2816      AC Q6R1L8.1
#=GS A0A0U1WHD1_9ALPC/2645-2985  AC A0A0U1WHD1.1
#=GS A0A075E3I6_9NIDO/2023-2392  AC A0A075E3I6.1
#=GS T2B9I2_MERS/2771-3126       AC T2B9I2.1
#=GS R1A_CVPPU/2413-2760         AC P0C6V2.1
#=GS E0ZN35_BCHK9/2629-2979      AC E0ZN35.1
#=GS U5KNA9_9BETC/2834-3189      AC U5KNA9.1
#=GS A0A172B201_9ALPC/2351-2700  AC A0A172B201.1
#=GS R1A_CVM2/2805-3161          AC P0C6U9.1
#=GS I7B5F2_9BETC/2862-3218      AC I7B5F2.1
#=GS Q0ZJK7_CVHK1/2860-3216      AC Q0ZJK7.1
#=GS Q6UZF1_SARS/2725-3119       AC Q6UZF1.1
#=GS A0A4D6FTD3_9GAMC/2166-2522  AC A0A4D6FTD3.1
#=GS B2BW32_9GAMC/2274-2636      AC B2BW32.1
#=GS A0A240FW17_9ALPC/2107-2447  AC A0A240FW17.1
#=GS R1A_BCHK9/2634-2984         AC P0C6T6.1
#=GS H9BR24_9NIDO/1988-2349      AC H9BR24.1
#=GS R1AB_CVHN5/2810-3166        AC P0C6X4.1
#=GS A0A0F6SKM6_9GAMC/2329-2686  AC A0A0F6SKM6.1
#=GS B3FHU3_CVTKE/2301-2657      AC B3FHU3.1
#=GS C6GHB6_9ALPC/2425-2772      AC C6GHB6.1
#=GS B7U2M9_9BETC/2772-3128      AC B7U2M9.1
#=GS A0A0K2RVJ3_9BETC/2807-3163  AC A0A0K2RVJ3.1
#=GS A0A059VJE6_9ALPC/2539-2879  AC A0A059VJE6.1
#=GS A0A2Z4EVM4_9NIDO/2593-2944  AC A0A2Z4EVM4.1
#=GS A0A1L2KGC3_9ALPC/2536-2874  AC A0A1L2KGC3.1
#=GS A0A3G8EYU2_9ALPC/2393-2733  AC A0A3G8EYU2.1
#=GS A7BKB9_9BETC/2772-3128      AC A7BKB9.1
#=GS A0A172B3C8_9ALPC/2351-2700  AC A0A172B3C8.1
#=GS A0A1L2KGC1_9ALPC/2535-2874  AC A0A1L2KGC1.1
#=GS R1AB_CVMA5/2859-3215        AC P0C6X9.1
#=GS A0A0U1UZA8_9ALPC/2688-3028  AC A0A0U1UZA8.1
#=GS A0A0K2RW65_9BETC/2807-3163  AC A0A0K2RW65.1
#=GS A0A0F6WGL5_9GAMC/2330-2686  AC A0A0F6WGL5.1
#=GS E0ZN59_BCHK9/2609-2959      AC E0ZN59.1
#=GS A0A023YA54_MERS/2872-3227   AC A0A023YA54.1
#=GS A3EXH3_BCHK9/2609-2959      AC A3EXH3.1
#=GS A0A0A7UXS1_9BETC/2819-3175  AC A0A0A7UXS1.1
#=GS B6VDX7_THCOV/2000-2371      AC B6VDX7.1
#=GS R1AB_SARS2/2788-3142        AC P0DTD1.1
#=GS A0A096XNJ3_9ALPC/2485-2837  AC A0A096XNJ3.2
#=GS I1VWF4_CVH22/2512-2852      AC I1VWF4.1
#=GS A3EXI9_BCHK9/2629-2979      AC A3EXI9.1
#=GS A0A0S2ZX33_9GAMC/2299-2656  AC A0A0S2ZX33.1
#=GS D9J203_9ALPC/2396-2748      AC D9J203.1
#=GS Q2QKN6_9BETC/2772-3128      AC Q2QKN6.1
#=GS Q6UZF5_SARS/2725-3119       AC Q6UZF5.1
#=GS R1A_CVHN5/2810-3166         AC P0C6U5.1
#=GS B1PHI7_9ALPC/2745-3085      AC B1PHI7.1
#=GS K4K1U5_9ALPC/2539-2879      AC K4K1U5.1
#=GS A0A120I2U3_9ALPC/2413-2760  AC A0A120I2U3.1
#=GS A8JNZ1_9ALPC/2483-2823      AC A8JNZ1.1
#=GS R1AB_BC512/2555-2894        AC P0C6W0.1
#=GS R1A_IBVB/2299-2657          AC P0C6V3.1
#=GS A0A0U1WHG4_9ALPC/2500-2838  AC A0A0U1WHG4.1
#=GS R1AB_BCHK5/2862-3217        AC P0C6W4.1
#=GS R1AB_IBVB/2299-2657         AC P0C6Y1.1
#=GS A8JNZ0_9ALPC/2483-2823      AC A8JNZ0.1
#=GS C0KYT7_9BETC/2859-3215      AC C0KYT7.1
#=GS R1AB_SARS/2725-3119         AC P0C6X7.1
#=GS C6GHB5_9ALPC/2425-2772      AC C6GHB5.1
#=GS A0A0U1WHC6_9ALPC/2645-2985  AC A0A0U1WHC6.1
#=GS H9BR07_9NIDO/2011-2380      AC H9BR07.1
#=GS B3FHU4_CVTKE/2301-2657      AC B3FHU4.1
#=GS I7AWB5_9BETC/2862-3218      AC I7AWB5.1
#=GS R1A_BCHK5/2862-3217         AC P0C6T5.1
#=GS I1VWF3_CVH22/2512-2852      AC I1VWF3.1
#=GS H9BQZ9_9NIDO/2033-2402      AC H9BQZ9.1
#=GS B2BW31_9GAMC/2274-2636      AC B2BW31.1
#=GS A0A125R5A3_9ALPC/2425-2772  AC A0A125R5A3.1
#=GS H9BR16_9NIDO/2000-2375      AC H9BR16.1
#=GS R1A_BC512/2555-2894         AC P0C6F6.1
#=GS A0A0U1WHL2_BCHK5/2862-3217  AC A0A0U1WHL2.1
#=GS R1AB_CVH22/2508-2847        AC P0C6X1.1
#=GS D9J202_9ALPC/2396-2748      AC D9J202.1
#=GS A0A0K1YZY7_SARS/2750-3119   AC A0A0K1YZY7.1
#=GS A0A0U1UZC3_9ALPC/2414-2752  AC A0A0U1UZC3.1
#=GS R1AB_BCHK4/2816-3170        AC P0C6W3.1
R1A_SARS2/2788-3142                    ............................................YLITPVHVMS.KHTDFSS.EIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQR.GG..S..YTNDKACPLIAAVIT....RE.VGFV..VPGLPGTILRT.tNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYTDFATS....ACVLAAECTIFKDASGKPVPYCYD.TNVLE...............G.SVAYESLRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVL.NNDYYrsLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT-i
Q6R1L9_CVHNL/2476-2816                 ......................................lfigvs------FIDY.TTTVTSF.HGYDFKYIENGQLKVFEAPLHCVRNVFDNFNQWHEAK.FG..V.vTTNSDKCPIVVGVSE....R-.-INV..VPGVPTNVYLV..GKTLVFT.....................LQAA..F...-GNTG...VCYDFDGVTT-----SD....KCIFNSACTRLEGLGGDN-VYCYN.TDLIE...............G.SKPYSILQPNAYYKYDV..K.NY..VRF..PEILARGfGLRTIRTLATRYCRVGECRDSHKGVCFGFDKWYVN.DGRV-..DDGYICGDGLIDLLVNVLSIFSSSFSVVAMSGHMLFNFLFAAFITFLCFLVTKFKRVFGDLSYGVFTVVCATLINNISYVVTQ-NLFFMLLYAILYFVFTRTV--RYAWIWHIAYIVAYFLLIPWWLL-t
A0A0U1WHG1_9ALPC/2358-2697             ...................................ymsvglfdf--------TE.S--VPSY.MGFDFKYIKEGRLHDFTERLDCVYSVFDNFDVWHESK.FG..T.vPTKSIKCPIVVGVSD....S-.-VRT..LPGVPAGVMLV..GKTLVFA.....................VKTV..F...GETGN...-CYDTQGVTS-----TS....SCLFTSACTVLSGIGGTI-TYCYK.DGIVE...............G.ARTYSELVPNTYYKMED..G.RH..VIF..PEVLARGfGFRAVRTLATTYCRAGQCVDSKAGVCFGLDRFLVY.SADSG..-SDFVCGNGLLSLLYNVLAIFSSSFSVAALSGQIIFNLVVAAIAVFVCFTVVKFKRMFGDMSRGVCTVGAAVLVNNLSYVVTQ-NTVGMIVYAVLYFLATRGV--TYSWIWYVSYVVAYSTLAPWWLL-s
V9PIT1_9ALPC/2438-2785                 ..........................................gl--CSVYSVAT.QSYIDSA.EGYDYMVIKNGVVQSFDDSINCVHNTYKGFAVWFKAK.HG..F.vPTFDKSCPIVLGTVF....-D.LGNMrpIPDVPAYVALV..-GRSLVF.....................AINA..A...FGVTN...VCYDHTGAAVSKNSYFD....TCVFNSACTTLTGIGGT-VVYCAK.QGLVE...............G.AKLYSELLPDYYYEHAS..G.NM..VKI..PAIIRSF.GLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVY.DKEFG..-DGYICGSSTLGFFKNVFALFNSNMSVVATSGAMLANIVIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLVVNNVSYFVTQ-NTFFMIVYAIIYYFTTRKL--AYPGVLDAGFIIAYLNMAPWYVLV.
B1PHK0_9ALPC/2652-2992                 ...............................fflllnasefgyv----------.---ATSF.EDFGFKYIEHGVLKDFDGPLSCVHNVFDNFNAWHEAR.YG..V.vPINRRICPIVVGTID....N-.-IRF..VPNVPSGIVLI..GKTLVFA.....................VKAV..F...TETGN...-CFNLNGLTT-----LG....SCIFNSACTNMDGLGGPA-TYCYK.EGLFE...............N.SKLYSDLVPHSHYKLED..G.NF..IKL..PETLARGlGFVTIKTMETTYCRVGECLDSKAGVCFGLDRFFVY.NTEFG..-GDYICGSGFLSFFRNVLSIFTSSFSVMALSGQVMFNCIVAAIAVVVCFLVIKFKRMFGDLSMGVCTVVAVVLINNVSYIITQ-NMLFMFLYAIFYFLAVKGL--KYAWIWHIGYVVAYFTLAPWFLV-a
S5YAF0_9ALPC/2584-2923                 .........................................ffv--TSLWNFAE.S--YHSG.SEFGYKYIENGALKDFSGPLDCVHNIFDDFMAWHHAK.YG.vQ..PINSRRCPIVVGVDE....--.NVRT..IPGVSAGVMLV..GKTLVFA.....................VKSV..Y...SSAG-...LCYDEFGAAA-----PE....QCLFNSACTTLKGLGGTS-TYCYR.SGLVS...............D.SGLYRDLLHDSHYFLPD..G.NY..VKF..PEVISRGfGFRTVRTAATTYCRVGQCVDSKQGVCFGLDRFLVY.SAESG..-SDFVCGTGLMSLLYNVFGIFTRSIPVVVLSGQIMFNCVVAFLAVSCCFLFTKFKRLFGDMSFGVFTVCCCVLVNNLSYIITQ-NYMGLVFYTVLYFFSTKTV--RYAWIWHIGYFVAYFLVAPWWLL-g
S5Z1D1_9ALPC/2584-2923                 .........................................ffv--TSLWNFAE.S--YHSG.SEFGYKYIENGALKDFSGPLDCVHNIFDDFMAWHHAK.YG.vQ..PINSRRCPIVVGVDE....--.NVRT..IPGVSAGVMLV..GKTLVFA.....................VKSV..Y...SSAG-...LCYDEFGAAA-----PE....QCLFNSACTTLKGLGGTS-TYCYR.SGLVS...............D.SGLYRDLLHDSHYFLPD..G.NY..VKF..PEVISRGfGFRTVRTAATTYCRVGQCVDSKQGVCFGLDRFLVY.SAESG..-SDFVCGTGLMSLLYNVFGIFTRSIPVVVLSGQIMFNCVVAFLAVSCCFLFTKFKRLFGDMSFGVFTVCCCVLVNNLSYIITQ-NYMGLVFYTVLYFFSTKTV--RYAWIWHIGYFVAYFLVAPWWLL-g
R1AB_BCHK9/2634-2984                   ..........................................qw--FTPWYIMR.P---IEY.NVVDFKVIDNAVIRDITSADQCFANKFSAFENWYSNR.YG..S..YVNSRGCPMVVGVVS....DI.VGSL..VPGLPARFLRV..GTTLLPL.....................VNYG..L...GAVGS...VCYTPHYAINYDVFDTS....ACVLAATCTLFSSASGERMPYCAD.AALIQ...............N.ASRYDMLKPHVMYPFYE.hS.GY..IRF..PEVIS-A.GVHIVRTMAMEYCKVGRCDVSEAGLCMSLQPRWVV.NNAYFrqQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGALLAVVVSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYATCYFGSDIACMMHVSFLIMFAGVVPLWVTV.
R1A_SARS/2763-3119                     .........................................vcy-IVMPVHTLS.IHDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S..YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............G.SISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a
Q0Q485_SARS/2761-3115                  ...........................................y-IIMPVHSLS.VHDGYTN.EIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQR.GG..S..YRNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRT.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............G.SISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEAGICLSTSGRWVL.NNEHYraLPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a
B1PHI6_9ALPC/2745-3085                 ........................................tffl----CLSISE.GLVATSF.ADFGFKYIKDGVMHDFDQPLSCVHNVFDNFNSWHEAR.FG..S.iPSNMLKCPIVVGTLD....D-.-VRN..VPGVPSGIVLV..GKTLVFA.....................IKAV..F...TDAGN...-CYGLNGLTT-----AG....ACLFNSACTKLEGLGGT-HVYCYK.DGLFE...............G.SKRYFDLVPHSNYKMED..G.NF..VKL..PETLVNGfGINIIRTMETTYCRVGECLKSKAGVCFGANRFFVY.NDDFG..-SDYICGNGLMSFVKNLFNTFTMSLSVMALSGQVIFNCVVAAMAIFICFLVVKFKRMFGDLSYGVCSVIAAVTINNLSYVFTQ-NMLFMFVYATFYFLAVRNL--NYAWIWHASYVVAYFNLAPWFIIV.
B1PHK1_9ALPC/2652-2992                 ...............................fflllnasefgyv----------.---ATSF.EDFGFKYIEHGVLKDFDGPLSCVHNVFDNFNAWHEAR.YG..V.vPINRRICPIVVGTID....N-.-IRF..VPNVPSGIVLI..GKTLVFA.....................VKAV..F...TETGN...-CFNLNGLTT-----LG....SCIFNSACTNMDGLGGPA-TYCYK.EGLFE...............N.SKLYSDLVPHSHYKLED..G.NF..IKL..PETLARGlGFVTIKTMETTYCRVGECLDSKAGVCFGLDRFFVY.NTEFG..-GDYICGSGFLSFFRNVLSIFTSSFSVMALSGQVMFNCIVAAIAVVVCFLVIKFKRMFGDLSMGVCTVVAVVLINNVSYIITQ-NMLFMFLYAIFYFLAVKGL--KYAWIWHIGYVVAYFTLAPWFLV-a
U5LR11_9BETC/2834-3189                 ............................................YCILPTFNMA.KVDFNND.RILGYKVLDNGIVRDIGIDDKCFVNKYNTFDAWYQQE.FG.nS..YDNDYNCPVVVAVIA....GI.SGER..VPGVPTSLIWA..GNQILFF.....................VSRV..F...ATNNN...ICYTPHMEIAYERFSDS....GCVLSAECTLFKDAVGSMVPYCYD.ANVLP...............G.AVPYDTMLPHVRYDLYD..S.NM.fIKF..PEVIVEG.TLRVVKTLKTQYCRLGSCEWSEAGICVSTNGSWML.NNEHYasKPGVYCGSDYLDMVRRSFMSVFQPITYFQLTTSLFMGLCLCLGIVVIFYYVNKFKRAFADYTQCVLIAVMATGLNGLCLCFVASNPFLIVPYSAFYYYSTFYVTNEPAVVMHASWLIMFLPVASVWVVC.
R1AB_CVM2/2805-3161                    ...........................................w-ALMPTYAVH.KSDMQLP.LYASFKVIDNGVLRDVTVTDACFANKFIQFDQWYEST.FGlvY..YRNSRACPVVVAVID....QD.IGYT..LFNVPTKVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.EGIMH...............N.ASLYDSLAPHVRYNLAN.sN.GY..IRF..PEVVSEG.IVRIVRTRSMTYCRVGLCEDAEEGVCFNFNSSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFC-i
A0A088DIE1_9BETC/2927-3283             ............................................YCLLPSFKSQ.PLNMYSD.EIIDFKVIEDGSLRDITADDTCFSNKHSSFVSWLSRNgFK..M..TTTSRHCPITVAVVA....KK.VGDV..IPSLPGVVTRVlvRGQIMHF.....................LARV..F...SAAAN...ICYTPGTLIEYEDFLTS....ACVLPAECTIFKDSNGIAVPYCYD.VNALQ...............G.SLPYSSLKHDVLYQLVD..N.SF..IKF..PKVLVEG.AFRIVRTMTTQYCRHGVCEDSMAGLCLSLRGSWVL.NNPYYtsQSGVYCGNDVVDLLMNILAPMFRPAGGMDITSSIVAGGILSLVITVVAYYILKLRRAFGDYQQVVVVNTLAFLCSFLVLCVSTQYPVLPTVYSILYFYMSLYMANEVSFIMHCSWCVMFVPIVPFWCT-a
A0A1B3Q5W8_9BETC/2678-3028             ...........................................q-WFTPWYTMT.A---VPY.DVIDFKVIDNAILRDIVPTDTCFANKFETFDNWYHNR.FG..T..YENNWRCPMVVGVVK....EL.VGVL..KPDLPVRFVRV..GTTLLPV.....................VNFG..M...SGADS...VCYTPYSAISYSDFETS....ACVLAATCTLFTGVGGQPAPYCAD.PTLIP...............N.ATHYGMLKPHVLYPFYE.tA.GY..IRF..PEVID-A.GVHIVKLMAMEYCKVGRCDVSEAGVCVTLTPMWVV.NNPTFrqLPGVYCGASFMDMILQVFTPMFTPVGAVDITGSIIMGACLAVAISMVLYYLLKFRRAFGDYSSVVLVNILAFVVNVLVLCLEGAYPMLPSIYALLFLYVTCYFSSDVAAIMHVSFLVMFTSVIPLWVTM.
R1A_BCHK4/2816-3170                    ...........................................w-FCLPSYSIA.TVNFNDD.RILTYKVIENGIVRDIAPNDVCFANKYGHFSKWFNEN.HG.gV..YRNSMDCPITIAVIA....GV.AGAR..VANVPANLAWV..GKQIVLF.....................VSRV..F...AN-TN...VCFTPINEIPYDTFSDS....GCVLSSECTLFRDAEGNLNPFCYD.PTVLP...............G.ASSYADMKPHVRYDMYD.sD.MY..IKF..PEVIVES.TLRITKTLATQYCRFGSCEESAAGVCISTNGSWAL.YNQNYstRPGIYCGDDYFDIVRRLAISLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGAVVPIWML-a
R1A_CVH22/2507-2847                    ......................................ylcffm----PYFMYD.I--VSSF.EGYDFKYIENGQLKNFEAPLKCVRNVFENFEDWHYAK.FG.fT..PLNKQSCPIVVGVSE....--.IVNT..VAGIPSNVYLV..GKTLIFT.....................LQAA..F...-GNAG...VCYDIFGVTT-----PE....KCIFTSACTRLEGLGGNN-VYCYN.TALME...............G.SLPYSSIQANAYYKYDN..G.NF..IKL..PEVIAQGfGFRTVRTIATKYCRVGECVESNAGVCFGFDKWFVN.DGRVA..-NGYVCGTGLWNLVFNILSMFSSSFSVAAMSGQILLNCALGAFAIFCCFLVTKFRRMFGDLSVGVCTVVVAVLLNNVSYIVTQ-NLVTMIAYAILYFFATRSL--RYAWIWCAAYLIAYISFAPWWLC-a
T2B9U0_MERS/2771-3126                  ............................................YLCLPTFSMV.PVEFYED.RILDFKVLDNGIIRDVNPDDKCFANKHRSFTQWYHEH.VG.gV..YDNSITCPLTVAVIA....GV.AGAR..IPDVPTTLAWV..NNQIIFF.....................VSRV..F...ANTGS...VCYTPIDEIPYKSFSDS....GCILPSECTMFRDAEGRMTPYCHD.PTVLP...............G.AFAYSQMRPHVRYDLYD..G.NM.fIKF..PEVVFES.TLRITRTLSTQYCRFGSCEYAQEGVCITTNGSWAI.FNDHHlnRPGVYCGSDFIDIVRRLAVSLFQPITYFQLTTSLVLGIGLCAFLTLLFYYINKVKRAFADYTQCAVIAVVAAVLNSLCICFVASIPLCIVPYTALYYYATFYFTNEPAFIMHVSWYIMFGPIVPIWMTC.
R1AB_FIPV/2438-2785                    ..........................................gl--CSVYSVAT.QSYIDSA.EGYDYMVIKNGVVQSFDDSINCVHNTYKGFAVWFKAK.HG..F.vPTFDKSCPIVLGTVF....-D.LGNMrpIPDVPAYVALV..-GRSLVF.....................AINA..A...FGVTN...VCYDHTGAAVSKNSYFD....TCVFNSACTTLTGIGGT-VVYCAK.QGLVE...............G.AKLYSELLPDYYYEHAS..G.NM..VKI..PAIIRSF.GLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVY.DKEFG..-DGYICGSSTLGFFKNVFALFNSNMSVVATSGAMLANIVIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLVVNNVSYFVTQ-NTFFMIVYAIIYYFTTRKL--AYPGVLDAGFIIAYLNMAPWYVLV.
R1A_CVMA5/2859-3215                    ...........................................w-ALMPTYAVH.KSDMQLP.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FG.lA.yYRNSKACPVVVAVID....QD.IGHT..LFNVPTTVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.GGVMH...............N.ASLYSSLAPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNRSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFC-i
E0ZN51_BCHK9/2629-2979                 ..........................................qw--FTPWYIMR.P---INY.NVVDFRVIDNAVIRDITPADQCFANKFSTFDAWYSNR.YG..S..YVNSRSCPMVVGVVS....DV.VGNL..VPGLPARFLRV..GATLLPL.....................VNYG..L...GAVGS...VCYTPHHSISYDVFETS....ACVLAATCTLFSSANGELMPYCAD.SALIQ...............N.ASRYDTLNPHVMYPFYE..QfGY..IRF..PEVIS-A.GVHIVKTMAMEYCKVGRCDVSEAGLCMSLQPRWVV.NNAYFrqQPGVYCGTGTLDLFLNMLLPIFTPVGAVDITTSILMGALLAVVVSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMAFLYATCYFGSDIACMMHVSFLIMFVGVVPLWVT-a
R9QTB2_SARS/2757-3111                  ...........................................y-IIMPVHSLS.VHDGYTN.EIIGYKAIQDGVTRDIVSTDDCFANKHAGFESWFSQR.GG..S..YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............G.SISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEAGICLSTSGRWVL.NNEHYraLPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a
H9BR34_9NIDO/1926-2295                 ........................................yvan----GLTYNT.VPTVKSDiKVSGFYLIRDGVLDTIRAEDDCFMNKFLAFDSYIQK-.--..P..YVNSPQCPIVVGIAD....-V.TGLS..LPGIPAGVIQR..DGLILHIyeqslydkllrkslvdgvlniQTRN..L...FNIGNkmvVGYTQHEVVTGDSYLYS....PALFNAKCTFLL-YNNNRTLYCYD.KVDVP...............-.HKLYSDVIPHVEYKAVDlnG.DY..VPFkiPEQLF-Y.YPHVVRYVSNNYCRMGHCFRTDPGVCVSFVDAFPYtQNDVY..--GVYCASNGYKLVTNLVLGTITGIHVFTSTAALLAS--TGVIIFCVIF-ALSFQRLFKEYTVFVVTTLVVAVFNIIGIFLFYKITLLAIVYYVVYVYIALLAAPVKRNIALFYLCVVFIPHITNMQL-l
R1AB_CVPPU/2413-2760                   ..........................................gl--CSVYSVAT.QSYIESA.EGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAK.YG..F.iPTFGKSCPIVVGTVF....DLeNMRP..IPDVPAYVSIV..-GRSLVF.....................AINA..A...FGVTN...MCYDHTGNAVSKDSYFD....TCVFNTACTTLTGLGGTI-VYCAK.QGLVE...............G.AKLYSDLMPDYYYEHAS..G.NM..VKL..PAIIRGL.GLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVY.DNEFG..-NGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQ-NTFFMIIYAIVYYFITRKL--AYPGILDAGFIIAYINMAPWYVI-t
A0A1X9JQL5_9ALPC/2382-2733             .....................................asvclfn------FNFK.TATFDSV.PEYDFRYIENGAMKFFNKGLPCVYNLYKEFPEWHKQR.YG..F.vPSFSVSCPIIVGASD....-L.NTNV..VPNVPSNVVLV..-GRILVF.....................SYQT..Y...FGHSK...LCFSDAYNFNMAKISDGdcarAAVFPSACTTLQGLGGS-HVYCFM.DGLYP...............G.AKLYSDLVPHLRYYTDA..N.NY..IML..PEVVMRGfGFKVTRFLGETYCRVGECVSSNAGVCVGADEWYVF.DSNIG..-DNYVCSEDVRGLVWAFFSFFNANIGTLLLTGQLTLNIVIACCIVCVCYTFVKFKRIFGDMSTLVLMVLAATVINSVSYLFTV-NFVFLMLYTCVYFISTRKV--YFSMVWDLMYVVAYVFVAPWYVVV.
A0A4D6FWB1_9GAMC/2166-2522             .....................................shlyvln-------TSF.NHGRVET.SSANFKVIDNGVIRSIVNEDSCFSNKYVQFDNFLGR-.--..D..YVQDNSCPIVVAVNF....-N.QGVI..ATGVPGFVGWH..DANLILHsivee...........lkawyAPTW..F...ADDAA...LGFTQDAVINGDDFYTS....VAIFAARCLYLK--TGTETLYCFGgSVDVS...............G.AEPFSVLVPHRLYLQPN..G.VK..VSF..PKQLL-Y.NPYVVQTVDTTYCRAGVCEPSKAGYCVSLTGRWLL.YNDDYlrESGNFCGGSWLELFFNMVNAFIVGVSPNIY-MHIAMMFVLLCIVIILFLCILKFQGIFKAYAMMVFSIIVVWLINIFMVTCYSYNPFVAIILAIVYCYWSLLVSRNFAVVMHLWLVVTFYFIVPMWIF-v
A0A125R5A4_9ALPC/2425-2772             ..........................................gl--CSIYSVAT.QSYIDSA.EGYDYMVIKNGVVQPFDDSINCVHNTYKGFAVWFKAK.YG..F.vPTFDKSCPIVLGTVF....-D.LGNMrpIPDVPAYVALV..-GRSLVF.....................AINA..A...FGVTN...VCYDHTGTAVSKGSYFD....TCVFNSACTTLAGLGGT-VVYCAK.QGLVE...............G.AKLYSELMPDYYYEHAS..G.NM..VKI..PAIIRGF.GLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVY.DKEFG..-DGYICASSTMGFFKNVFALFNSNMSVVATSGAMLANIVIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLVVNNVSYFVTQ-NTFFMIVYAITYYFTTRKL--AYPGILDAGFIIAYVNMAPWYVLV.
A0A140ESF0_9NIDO/2023-2392             .......................................flasq-----ITLNT.VPTIKSDiRASTFYVVRDGVLDTVRSNDKCFANKFLAFDSFIQA-.--..P..YTNSPDCPVVVGVVD....-V.TTHS..IPGIPAGVIHR..DGLILNIyeqslyethqrqsmvrdalslKTAN..L...FNLGKrvvVGYTQHEVVVGTSYFNS....PALFNAKCTFLQ-YQDTRQLYCYD.T-VPT...............E.HKLYSDVLPHVEYKAIDinG.DL..VPFkiPEQIM-F.YPHIVRYTSNSYCRMGHCFNTNPGICISFTDEFPY.SENV-..KPGVYCADTSLQLFSNLVLGTVSGIHIFTSTAALLGST--IVIILCVV-AVLAVQRFFKEYTTFVMYTCGLALVNIVGIALMYKCLVFAIFYYAIYLYFVLTFPSFKRNVALFYFAVVIVPHVSNMQL-l
A0A0K1Z0N1_SARS/2722-3119              attrqvvnvittkislkggkivstwfklmlkatllcvlaalvcy-IVMPVHTLS.IHDGYTN.EIIGYKAIQDGVTRDIVSTDDCFANKHAGFDAWFSQR.GG..S..YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............G.SISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a
Q6R1L8_CVHNL/2476-2816                 ......................................lfigvs------FIDY.TTTVTSF.HGYDFKYIENGQLKVFEAPLHCVRNVFDNFNQWHEAK.FG..V.vTTNSDKCPIVVGVSE....R-.-INV..VPGVPTNVYLV..GKTLVFT.....................LQAA..F...-GNTG...VCYDFDGVTT-----SD....KCIFNSACTRLEGLGGDN-VYCYN.TDLIE...............G.SKPYSILQPNAYYKYDV..K.NY..VRF..PEILARGfGLRTIRTLATRYCRVGECRDSHKGVCFGFDKWYVN.DGRV-..DDGYICGDGLIDLLVNVLSIFSSSFSVVAMSGHMLFNFLFAAFITFLCFLVTKFKRVFGDLSYGVFTVVCATLINNISYVVTQ-NLFFMLLYAILYFVFTRTV--RYAWIWHIAYIVAYFLLIPWWLL-t
A0A0U1WHD1_9ALPC/2645-2985             ...............................fflllnasefgyv----------.---ATSF.EDFGFKFIENGVLKDFEGPLQCVHNVFDNFNVWHEAR.YG.vT..PINRRSCPIVVGTMD....N-.-IRF..VPNVPSGILLV..GKTLVFA.....................VKAV..F...TETGN...-CFDLSGLTT-----MG....SCIFNSACTNMDGLGGPA-TYCYK.EGLVE...............N.SKLYADLVPHSHYKLED..G.NY..VKL..PETLARGlGFVTIKTMETTYCRIGECLDSKAGVCFGMDRFFVY.NTEFG..-GDYICGSGFLSFFRNVLGIFTSSFSVMALSGQVMFNCIVAAVAVVVCFLVIKFKRMFGDLSMGVCTVVAAVFVNNVSYIVTQ-NMLFMFLYAIFYFLAVKGL--KYAWIWHLGYVVAYFTLAPWFLV-a
A0A075E3I6_9NIDO/2023-2392             .......................................flasq-----ITLNT.VPTIKSDiRASTFYVVRDGVLDTVRSNDKCFANKFLAFDSFIQA-.--..P..YTNSPDCPVVVGVVD....-V.TTHS..IPGIPAGVIHR..DGLILNIyeqslyethqrqsmvrdalslKTAN..L...FNLGKrvvVGYTQHEVVVGTSYFNS....PALFNAKCTFLQ-YQDTRQLYCYD.T-VPT...............E.HKLYSDVLPHVEYKAIDinG.DL..VPFkiPEQIM-F.YPHIVRYTSNSYCRMGHCFNTNPGICISFTDEFPY.SENV-..KPGVYCADTSLQLFSNLVLGTVSGIHIFTSTAALLGST--IVIILCVV-AVLAVQRFFKEYTTFVMYTCGLALVNIVGIALMYKCLVFAIFYYAIYLYFVLTFPSFKRNVALFYFAVVIVPHVSNMQL-l
T2B9I2_MERS/2771-3126                  ............................................YLCLPTFSMV.PVEFYED.RILDFKVLDNGIIRDVNPDDKCFANKHRSFTQWYHEH.VG.gV..YDNSITCPLTVAVIA....GV.AGAR..IPDVPTTLAWV..NNQIIFF.....................VSRV..F...ANTGS...VCYTPIDEIPYKSFSDS....GCILPSECTMFRDAEGRMTPYCHD.PTVLP...............G.AFAYSQMRPHVRYDLYD..G.NM.fIKF..PEVVFES.TLRITRTLSTQYCRFGSCEYAQEGVCITTNGSWAI.FNDHHlnRPGVYCGSDFIDIVRRLAVSLFQPITYFQLTTSLVLGIGLCAFLTLLFYYINKVKRAFADYTQCAVIAVVAAVLNSLCICFVASIPLCIVPYTALYYYATFYFTNEPAFIMHVSWYIMFGPIVPIWMTC.
R1A_CVPPU/2413-2760                    ..........................................gl--CSVYSVAT.QSYIESA.EGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAK.YG..F.iPTFGKSCPIVVGTVF....DLeNMRP..IPDVPAYVSIV..-GRSLVF.....................AINA..A...FGVTN...MCYDHTGNAVSKDSYFD....TCVFNTACTTLTGLGGTI-VYCAK.QGLVE...............G.AKLYSDLMPDYYYEHAS..G.NM..VKL..PAIIRGL.GLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVY.DNEFG..-NGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQ-NTFFMIIYAIVYYFITRKL--AYPGILDAGFIIAYINMAPWYVI-t
E0ZN35_BCHK9/2629-2979                 ..........................................qw--FTPWYIMR.P---INY.NVVDFRVIDNAVIRDITPADQCFANKFSTFDAWYSNR.YG..S..YVNSRSCPMVVGVVS....DV.VGNL..VPGLPARFLRV..GATLLPL.....................VNYG..L...GAVGS...VCYTPHHSISYDVFETS....ACVLAATCTLFSSANGELMPYCAD.SALIQ...............N.ASRYDTLNPHVMYPFYE..QfGY..IRF..PEVIS-A.GVHIVKTMAMEYCKVGRCDVSEAGLCMSLQPRWVV.NNAYFrqQPGVYCGTGTLDLFLNMLLPIFTPVGAVDITTSILMGALLAVVVSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMAFLYATCYFGSDIACMMHVSFLIMFVGVVPLWVT-a
U5KNA9_9BETC/2834-3189                 ............................................YCILPTFNMA.KVDFNND.RILGYKVLDNGIVRDIGIDDKCFVNKYNTFDAWYQQE.FG.nS..YDNDYNCPVVVAVIA....GI.SGER..VPGVPTSLIWA..GNQILFF.....................VSRV..F...ATNNN...ICYTPHMEIAYERFSDS....GCVLSAECTLFKDAVGSMVPYCYD.ANVLP...............G.AVPYDTMLPHVRYDLYD..S.NM.fIKF..PEVIVEG.TLRVVKTLKTQYCRLGSCEWSEAGICVSTNGSWML.NNEHYasKPGVYCGSDYLDMVRRSFMSVFQPITYFQLTTSLFMGLCLCLGIVVIFYYVNKFKRAFADYTQCVLIAVMATGLNGLCLCFVASNPFLIVPYSAFYYYSTFYVTNEPAVVMHASWLIMFLPVASVWVVC.
A0A172B201_9ALPC/2351-2700             ........................................glcc----IYDGYT.PARVSSA.PGYDFMVIRSGKIQSFDDSITCVHNVYNEFPSWYLGR.YG..K.sLSYAKNCPIVVGTVF....DI.IDSMkpVPDVPAYVTLV..-GRSLVF.....................AINA..V...FGNTD...LCYDHQGVAKSRDSVFD....NCVFNAACTQLVGMGGTA-VYCFK.DGVML...............GaHKTYAELIPDTHYMLRD..G.NT..LKL..PTIIRGF.GLRIVQTLATTYCRVGECTQSKQGFCVGLDNWFVY.DKAFG..-EGYICGDSVFGFVTNVFKLFNQNLSVVATSGYMLTNMLIALFAIAVCYAFLKFKRVFGDCTMFVSMIIVTLFINNLSYFFTH-NLVLVVVYAVAYYFLSRRL--PYPGVMDAGFMLAYVGMAPWWLF-v
R1A_CVM2/2805-3161                     ...........................................w-ALMPTYAVH.KSDMQLP.LYASFKVIDNGVLRDVTVTDACFANKFIQFDQWYEST.FGlvY..YRNSRACPVVVAVID....QD.IGYT..LFNVPTKVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.EGIMH...............N.ASLYDSLAPHVRYNLAN.sN.GY..IRF..PEVVSEG.IVRIVRTRSMTYCRVGLCEDAEEGVCFNFNSSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFC-i
I7B5F2_9BETC/2862-3218                 ...........................................w-ALMPTYAVH.KSDMQLP.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FGlvY..YRNSKACPVVVAVID....QD.IGHT..LFNVPTKVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.EGVMH...............N.ASLYSSLVPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNSSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVQPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFC-i
Q0ZJK7_CVHK1/2860-3216                 ...........................................w-ALLPTYSVY.KSDIHLP.AYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYEST.FG..SvyYHNSMDCPIVVAVMD....ED.IGST..MFNVPTKVLRY..GFHVLHF.....................LTYA..F...ASDSV...QCYTPHIQISYNDFYAS....GCVLSSLCTMFKRGDGTPHPYCYT.DGVMK...............N.ASLYTSLVPHTRYSLAN.sN.GF..IRF..PDVISEG.IVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVL.NNDYYrsMPGTFCGRDFFDLFYQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCV.
Q6UZF1_SARS/2725-3119                  ...rqvvnvittkislkggkivstcfklmlkatllcvlaalvcy-IVMPVHTLS.IHDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S..YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............G.SISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a
A0A4D6FTD3_9GAMC/2166-2522             .....................................shlyvln-------TSF.NHGRVET.SSANFKVIDNGVIRSIVNEDSCFSNKYVQFDNFLGR-.--..D..YVQDNSCPIVVAVNF....-N.QGVI..ATGVPGFVGWH..DANLILHsivee...........lkawyAPTW..F...ADDAA...LGFTQDAVINGDDFYTS....VAIFAARCLYLK--TGTETLYCFGgSVDVS...............G.AEPFSVLVPHRLYLQPN..G.VK..VSF..PKQLL-Y.NPYVVQTVDTTYCRAGVCEPSKAGYCVSLTGRWLL.YNDDYlrESGNFCGGSWLELFFNMVNAFIVGVSPNIY-MHIAMMFVLLCIVIILFLCILKFQGIFKAYAMMVFSIIVVWLINIFMVTCYSYNPFVAIILAIVYCYWSLLVSRNFAVVMHLWLVVTFYFIVPMWIF-v
B2BW32_9GAMC/2274-2636                 .........................................lmi---SLIAPTF.TPSVVEL.AASGYKVIDNGVIRPIVETDNCFANKYAGFNDWYYGF.VG..K.yPYNSVDCPVVVALTTimdaNM.KGAI..VPGYAGNMAWL..NGQIVHY.....................RHEFswFtgsSAEGI...VGYTRDIVVYGEDFIKS....LALISARCVKLMMVSER--LYCYGgSNDAI...............D.ALPFTAIQPHVVYNDAI..GvGK..LVV..PEQLL-Y.KPYIVYTQAREYCRAGVCEQAKEGYCINFNGEWAL.FNQHYtsKDGVYCGETPMSVVMSIINAYIYQGTTTSFFNRFCVLSVMMLIALVALVYVVKFQAFFKTYAGLACAILLSWGFNAIMLLSYSVNPIVVMPLIVVYMYVALTVTTPTAIIMHVAFLVTIVPMLPYSLM-a
A0A240FW17_9ALPC/2107-2447             .....................................lmlgfsy-----WNVNS.L---SDF.NVVGFKYIENGRLKNFEGPVSCLYNNFINFDNWHYTK.FN..A.gFKNDKNCPIVVGTFE....-D.-GKV..IPNVPANVKLV..GNLLYFG.....................LNSV..F...QSQDN...LCFDQFGLT-------E....NCVFNSACLKLTGIVGER-VYCYS.KGLVN...............D.SLLYADILPHLAYQTVD..G.AL..LRL..PKLIFSIlGLKFVQLKDLLYCKMGECVNSQLGYCLGAESFMVY.NKEYN.kDKYVFCGEGFLGFIRNFYTTFNTNVFSLFLTTQVMINFLVMLIVLFGFWLAMRIRRMFGDFTMSVCYIVVATMVNSLSYLVTG-NSIGLLVYGLVYFFVTLRL--NYTYIWHMCFIIAYLTIAPMWTI-f
R1A_BCHK9/2634-2984                    ..........................................qw--FTPWYIMR.P---IEY.NVVDFKVIDNAVIRDITSADQCFANKFSAFENWYSNR.YG..S..YVNSRGCPMVVGVVS....DI.VGSL..VPGLPARFLRV..GTTLLPL.....................VNYG..L...GAVGS...VCYTPHYAINYDVFDTS....ACVLAATCTLFSSASGERMPYCAD.AALIQ...............N.ASRYDMLKPHVMYPFYE.hS.GY..IRF..PEVIS-A.GVHIVRTMAMEYCKVGRCDVSEAGLCMSLQPRWVV.NNAYFrqQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGALLAVVVSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYATCYFGSDIACMMHVSFLIMFAGVVPLWVTV.
H9BR24_9NIDO/1988-2349                 ........................................ycfm----WMVTPSpPTTLVDV.PATDFRLIRNGVFDVIRSTDTCFSNKFVSFSTWLNR-.--..P..FTNSPDCPVVVGAIS....-T.VGAQ..IAGLPGQVLWR..NNLLVHVfdkfsts......vlgdlnllGHAS..W...NKRNA...VGYTASTVVTGNSYLNS....IALYNSECVYLR-LEGQRELYCYD.R-VND...............Q.HRLYSDIKPHVTYTVESsdG.KL..LPLvvPDQIM-Y.TPYIVRFSQVNYCRMGHCFDTKPGICISFIHDFIA.YTDNL..PPGVFCGDNILHLLTNAVIGSIAAKDAFKSTTALMCS--TGAIIVCVL-VVLFIQKLFKGYTTFVLIVVLNAIINLILLYTYMYIPVLAILLYGLYCYLILLCTPMARTVAVILIAVTVIPLCTNTFI-i
R1AB_CVHN5/2810-3166                   ...........................................w-ALLPTYSVY.KSDIHLP.AYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYEST.FG..SvyYHNSMDCPIVVAVMD....ED.IGST..MFNVPTKVLRY..GFHVLHF.....................LTYA..F...ASDSV...QCYTPHIQISYNDFYAS....GCVLSSLCTMFKRGDGTPHPYCYT.DGVMK...............N.ASLYTSLVPHTRYSLAN.sN.GF..IRF..PDVISEG.IVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVL.NNDYYrsMPGTFCGRDFFDLFYQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCV.
A0A0F6SKM6_9GAMC/2329-2686             ..............................yygvkmhpmydvns----------.-----TF.PVENFKVIENGVLRDLVSEDNCFSNKFLGFDDFWGK-.--..P..YTNSRDCPIVTALID....G-.TGFV..AAGVPGYVHWV..MDNTMFIhtaqa..........eqkpwyAPSW..F...PQEDV...VGYTIDSVITQGEFYSS....IATFPARCMYFAT-SAAPQLYCYGgENDAP...............G.AMPYESVQPHRDIFQPN..N.VR..FSI..PQQIM-Y.TPYIVKLASDNYCRGSVCEKTKLGYCYSWNPRWVL.YNDDYvkLPGVYCGATVRELVFSMLGSFFTGVSPN-LYLHLTTMFLVLLCVMVVFALVIRFQGVFKAYTPVVFAVIMVWGLNVFMLCVYSYNPFVAVMLLALYCYMSLMVGRTVSTVMHLWVVFTFIMVVPWWLA-c
B3FHU3_CVTKE/2301-2657                 ..............................mnkifvhpmydvns----------.-----TM.HVEGFKVIDKGVIRDIVPEDACFSNKFANFDAFWGK-.--..S..YENSRDCPIVTAIID....G-.AGTV..AAGVPGFVDWV..MNGVMFVhmaqt...........drrpwYVPA..W...FNREI...VGYTQDSIVTEGSFYTS....IALFSARCLYLI-ASNTPQLYCFNgDSDAP...............G.ALPFSSIIPHRVYFQPN..G.VR..LIV..PQQIM-H.TPYIVKLLSDSYCRGSVCEYTKPGYCMSLNSQWVL.FNDEYigRPGVFCGSTVRELVFNMVSTFFTGVNP-NIYMQLATMFLILVIVVLIFAMVIKFQGVFKAYATIVFTIMLVWAVNAFVLCVHSYNSVVAAILLVLYCYASLVTSRNTSIIMHCWLVFTFGLIVPIWLA-c
C6GHB6_9ALPC/2425-2772                 ..........................................gl--CSVYSVAT.QSYIASA.EGYDYMVIKNGVVQPFDGSIKCVHNTYKGFAVWFKAK.YG..F.vPTFDKSCPIVLGTVF....-D.LGNMrpIPDVPAYVALV..-GRSLVF.....................AINA..A...FGVTN...VCYDHMGAAVSKNSYFD....TCVFNSACTTLTGLGGT-VVYCAK.QGLVD...............G.AKLYSELLPDYYYEHAS..G.NM..VKI..PAIIRGF.GLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVY.DKEFG..-DGYICGSSTLGFFKNVFALFNSNTSVVATSGAMLANIIIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLIVNNVSYFVTQ-NTFFMIVYAIIYYFTTRKL--AYPGILDAGFIIAYMNMAPWYVLV.
B7U2M9_9BETC/2772-3128                 ............................................WCLMPTYTVH.KSDFQLP.VYTSYKVLDNGVIRDVSVEDVCFANKFEQFDQWYEST.FG.lS.yYSNSMACPIVVAVVD....QD.LGST..VFNVPTKVLRY..GYHVLHF.....................ITHA..L...SADGV...QCYTPHSQISYSNFYAS....GCVLSSACTMFAMADGSPQPYCYT.EGLMQ...............N.ASLYSSLVPHVRYNLAN.aK.GF..IRF..PEVLREG.LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVL.NNDYYrsLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFC-l
A0A0K2RVJ3_9BETC/2807-3163             ............................................WCLMPTYTVH.KSDFQLP.VYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYEST.FG.lS.yYSNSMACPIVVAVVD....QD.FGST..VFNVPTKVLRY..GYHVLHF.....................ITHA..L...SADGV...QCYTPHSQISYSNFYAS....GCVLSSACTMFAMADGSPQSYCYT.EGLMQ...............N.ASLYSSLVPHVRYNLAN.aK.GF..IRF..PEVLREG.LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVL.NNDYYrsLPGTFCGRDVSDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTFSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFC-l
A0A059VJE6_9ALPC/2539-2879             ........................................vffa----LSFFDF.STQVSSD.SDYDFKYIESGQLKTFDNPHSCVHNVFSNFDQWHDAK.FG.fT..PVNNPSCPIVVGVSD....E-.-ART..VPGIPAGVYLA..-GKTLVF.....................AINT..I...FGTSG...LCFDASGVAD-----KG....ACIFNSACTTLSGLGGTA-VYCYK.NGLVE...............G.AKLYSELAPHSYYKMVD..G.NA..VSL..PEIISRGfGIRTIRTKAMTYCRVGQCVQSAEGVCFGADRFFVY.NAESG..-SDFVCGTGLFTLLMNVISVFSKTVPVTVLSGQILFNCIIAFAAVAVCFLFTKFKRMFGDMSVGVFTVGACTLLNNVSYIVTQ-NTLGMLGYATLYFLCTKGV--RYMWIWHLGFLISYILIAPWWVLM.
A0A2Z4EVM4_9NIDO/2593-2944             ..................................qwllpryslt----------.---KENF.NVMDFKVIDNAAIRDITANDMCFANKFSGFDDWYFTR.YG..Q.tYTNDVSCPMVVGVIS....QT.LGTL..YAGLPARFLRV..GRSLLPL.....................INFA..F...GMDGQ...VCYTPYTAVDYTTFADS....ACVLASACTLFKNAAGEPVPYCAS.NNLLT...............N.ATLYKELTPHMAYPLYE.sN.GY..IRF..PDTIT-A.GVHIVTLKAMEYCRLDRCDISDSGVCVSLTPRWVV.NNFYYrqQPGVYCGSSTLDMLYQVVLPVFRPAGTIDITSSVLMGAALAFLVSIVLYYLLKFRRAFGDYTTVVAVNMIAFFLNLLVLCLESAYPLFPTVYAFVFLYATCYFTSDVSAIMHLSFMAMFTSVVPLWVTV.
A0A1L2KGC3_9ALPC/2536-2874             .........................................fsl--ISLWDFTT.Y--VDSF.PGYDFKYIENGQLKVFDKPLGCVRNVFNDFNQWHQAK.FG..S.vPTNSDKCPIVVGVSE....--.RTNV..VPGIPTNVYLV..GKTLVFT.....................VQAA..F...SDTG-...VCYDLYGPTT-----PE....RCIFNSACTKLEGLGGVG-VYCHE.ANLVD...............G.AKLYSDLQPNTYYRYDK..D.NY..VRL..PEILMRGfGFKTIRTLATTYCRVGECIDSMRGVCFGLDKWFVY.DGST-..-DGHVCGDGLLDLLLNVLSIFSASFSVAAMSGQIVFNFCIAALVVFMCFLVTKFKRVFGDMSLGVCTVVCATVVNNLSYVVTQ-NVLFMIVYALLYFAVTRTF--RYAWIWYIAYVIAYIFFAPWWLY-l
A0A3G8EYU2_9ALPC/2393-2733             ....................................lyfsvgfi--------NF.TDTASSF.EGFDFKYIENGHLRDFDKPLDCVYNVFDNFAAWFESK.FG..F.vPSHSVKCPIIVGVLD....D-.-VRT..VPDVPAGVKLV..GKTLVFG.....................VKTI..F...GDSGN...-CYDLQGVAN-----VA....SCLFTSACTILTGIGGT-HTYCYK.DGVMD...............G.ARTYSELLYNTHYKLQD..G.QY..VKF..PEVLVKGvGFRVVRTMATTYCRVGQCVDSKAGVCFGADRFLVY.NSEAG..-ADFVCGTGLLSLFYNIFSMFSNSFSVAALSGQIVFNMIVAALAVFICFTVVKFKRMFGDMSRGVCVVVATVVINNVSYVVTQ-NSLGMVAYALVYFLATRGV--TYSWIWYVGYVVAYFNIAPWWLV-t
A7BKB9_9BETC/2772-3128                 ............................................WCLMPTYTVH.KSDFQLP.VYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYEST.FG.lS.yYSNSMACPIVVAVVD....QD.FGST..VFNVPTKVLRY..GYHVLHF.....................ITHA..L...SADGV...QCYTPHSQISYSNFYAS....GCVLSSACTMFAMADGSPQPYCYT.EGLMQ...............N.ASLYSSLVPHVRYNLAN.aK.GF..IRF..PEVLREG.LVRIVRTRSMSYCRVGLCEEADEGICLNFNGSWVL.NNDYYrsLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFC-l
A0A172B3C8_9ALPC/2351-2700             ........................................glcc----IYDGYT.PARVSSA.PGYDFMVIRSGKIQSFDDSITCVHNVYNEFPSWYLGR.YG..K.sLSYAKNCPIVVGTVF....DI.IDSMkpVPDVPAYVTLV..-GRSLVF.....................AINA..V...FGNTD...LCYDHQGVAKSRDSVFD....NCVFNAACTQLVGMGGTA-VYCFK.DGVML...............GaHKTYAELIPDTHYMLRD..G.NT..LKL..PTIIRGF.GLRIVQTLATTYCRVGECTQSKQGFCVGLDNWFVY.DKAFG..-EGYICGDSVFGFVTNVFKLFNQNLSVVATSGYMLTNMLIALFAIAVCYAFLKFKRVFGDCTMFVSMIIVTLFINNLSYFFTH-NLVLVVVYAVAYYFLSRRL--PYPGVMDAGFMLAYVGMAPWWLF-v
A0A1L2KGC1_9ALPC/2535-2874             ........................................lfsl--ISLWDFTT.Y--VDSF.PGYDFKYIENGQLKVFDKPLGCVRNVFNDFNQWHQAK.FG..S.vPTNSDKCPIVVGVSE....--.RTNV..VPGIPTNVYLV..GKTLVFT.....................VQAA..F...SDTG-...VCYDLYGPTT-----PE....RCIFNSACTKLEGLGGVG-VYCHE.ANLVD...............G.AKLYSDLQPNTYYRYDK..D.NY..VRL..PEILMRGfGFKTIRTLATTYCRVGECIDSMRGVCFGLDKWFVY.DGST-..-DGHVCGDGLLDLLLNVLSIFSASFSVAAMSGQIVFNFCIAALVVFMCFLVTKFKRVFGDMSLGVCTVVCATVVNNLSYVVTQ-NVLFMIVYALLYFAVTRTF--RYAWIWYIAYVIAYIFFAPWWLY-l
R1AB_CVMA5/2859-3215                   ...........................................w-ALMPTYAVH.KSDMQLP.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FG.lA.yYRNSKACPVVVAVID....QD.IGHT..LFNVPTTVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.GGVMH...............N.ASLYSSLAPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNRSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFC-i
A0A0U1UZA8_9ALPC/2688-3028             ...............................tfffcvgisegli----------.---ATSL.EGFGFKYIKDGVMHDFDKPLSCVHNVFDNFNSWHEAR.FG..S.iPSNSLKCPIVVGTLD....D-.-VRN..VPGVPSGILLV..GKTLVFA.....................IKAV..F...TDAGN...-CYGLNGLTN-----AG....ACLFNSACTKLEGLGGT-HVYCYK.DGLFE...............G.SKRYSDLVPHSNYKMED..G.NF..VKL..PETLVNGfGINIIRTMETTYCRVGECLKSKAGVCFGANRFFVY.NDDFG..-SDYICGNGLFSFVKNLFNTFTMSLSVMALSGQVIFNCAVAALAIFICFLVVKFKRMFGDLSYGVCSVIAAVTINNLSYVFTQ-NMLFMFVYATFYFLAVRNL--NYAWIWHASYVVAYFNMAPWFIIV.
A0A0K2RW65_9BETC/2807-3163             ............................................WCLMPTYTVH.KSDFQLP.VYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYEST.FG.lS.yYSNSMACPIVVAVVD....QD.FGST..VFNVPTKVLRY..GYHVLHF.....................ITHA..L...SADGV...QCYTPHSQISYSNFYAS....GCVLSSACTMFAMADGSPQSYCYT.EGLMQ...............N.ASLYSSLVPHVRYNLAN.aK.GF..IRF..PEVLREG.LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVL.NNDYYrsLPGTFCGRDVSDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTFSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFC-l
A0A0F6WGL5_9GAMC/2330-2686             ...............................ygvkmhpmydvns----------.-----TF.PVENFKVIENGVLRDLVSEDNCFSNKFLGFDDFWGK-.--..P..YTNSRDCPIVTALID....G-.TGFV..AAGVPGYVHWV..MDNTMFIhtaqa..........eqkpwyAPSW..F...PQEDV...VGYTIDSVITQGEFYSS....IATFPARCMYFAT-SAAPQLYCYGgENDAP...............G.AMPYESVQPHRDIFQPN..N.VR..FSI..PQQIM-Y.TPYIVKLASDNYCRGSVCEKTKLGYCYSWNPRWVL.YNDDYvkLPGVYCGATVRELVFSMLGSFFTGVSPN-LYLHLTTMFLVLLCVMVVFALVIRFQGVFKAYTPVVFAVIMVWGLNVFMLCVYSYNPFVAVMLLALYCYMSLMVGRTVSTVMHLWVVFTFIMVVPWWLA-c
E0ZN59_BCHK9/2609-2959                 ........................................qwft----PWYILR.P---IDY.KVVDFKVMDNAVLRDITAADQCFANKFSAFDGWYSNR.YG..S..YVNSRNCPMVVGVVS....DI.IGTL..VPGLPARFLRV..GTTLLPL.....................VNFG..L...GGASS...VCYTPYHAINYDVFETS....SCVLAATCTLFASANGEPAPYCAD.ALLIN...............N.ASGYDTLHPHVMYPFYE.hA.GY..IRF..PEVVS-A.GVHIVKTMAMEYCKVGRCDVSEAGLCMSIQPRWIV.NNAYFrqQQGVYCGTNVLDLFMSMLLPIFAPVGAVDITTSILMGAVLAVVVSMALYYLLRFRRAFGDYSGVIFANIVAFVLNVIVLCLEGPYPMLPSIYAMAFLYATCYFGSDIACMMHVSFLIMFAGVVPLWVT-i
A0A023YA54_MERS/2872-3227              ............................................YFTLPTFNME.TVEFYED.RTLEYKVLDNGVIRDITSGDKCFANKYRSFAQWYHEH.VG.gS..FDNDIACPVTVAVIA....GV.AGAR..VPGVPTTLAWV..KKQIVFF.....................VSRV..F...ANSPN...VCYTPRSEIPYKSFSDS....GCILPSECTMFRDAEGKMVPYCYD.PTVLP...............G.AHAYANMKPHVRYDMFE..G.NM.fIKF..PEVVFES.TIRVTKTLSTQYCRFGSCEYAQEGVCITTNGSWAI.FNDFHanRPGVYCGFDYLDIVRRLALGVFQPITYFQLTTSLVLGIGLCAFMTLVFYYINKVKRALADYTQCAVIAVCATIMNSLCLCFVVACPLCVVPYTALYYYATFYFTNEPAFIMHLSWFVMFGAVVPVWTTC.
A3EXH3_BCHK9/2609-2959                 ........................................qwft----PWYILR.P---IDY.KVVDFKVMDNAVLRDITAADQCFANKFSAFDGWYSNR.YG..S..YVNSRNCPMVVGVVS....DI.IGTL..VPGLPARFLRV..GTTLLPL.....................VNFG..L...GGASS...VCYTPYHAINYDVFETS....SCVLAATCTLFASANGEPAPYCAD.ALLIN...............N.ASGYDTLHPHVMYPFYE.hA.GY..IRF..PEVVS-A.GVHIVKTMAMEYCKVGRCDVSEAGLCMSIQPRWIV.NNAYFrqQQGVYCGTNVLDLFMSMLLPIFAPVGAVDITTSILMGAVLAVVVSMALYYLLRFRRAFGDYSGVIFANIVAFVLNVIVLCLEGPYPMLPSIYAMAFLYATCYFGSDIACMMHVSFLIMFAGVVPLWVT-i
A0A0A7UXS1_9BETC/2819-3175             ...........................................w-LFMPSYSVH.KSAYELP.AYASFKVIDNGVVRDVDVKDVCFANKYAQFDQWYEST.FG.lS.yYSNHHSCPVVVAVID....KD.IGST..VFNVPTKVLRF..GYHVLHF.....................ITYA..F...SADGV...QCYTPHEQISYSDFYSS....GCVLSSACTMFASDNGASQAYCYT.EGLVQ...............N.ASLYSSLRPHVRYSLAN.tH.GY..IRF..PEVLREG.LVRVIRTKAMTYCRVGLCESAEEGICFTFNGSWAL.NNEYYrkMPGTFCGRDFVDIFNQFVVGLAQPIDFFSLTMSSVVGAVLAIIIVLIFYYLIKLKRAFGDYTAVVVVNVIVWFINFVMLFVFQVYPTFAVIYALCYFYVTLYFPSEISVIMHLQWLVMYGTIMPIWFC-i
B6VDX7_THCOV/2000-2371                 ...............................matlavyvyqpiy----------.PTVMSDI.PTSGFYVIRDGVLDNIRSTDTCFSNKFVSFDAYLQA-.--..D..YVNSHNCPVVVGVAD....-V.ATKS..IPGIPAGVIHR..DSGILHIyeqslydrlqrqsmvqealglKTRA..L...FNIGYrtvVGYTRSDVVVGASYMHS....PSLFNAKCTYLE-YQDKRHLYCFD.KVDRE...............-.HKLYADVIPHVEYKAVDfnG.EL..VPFkiPEQLL-L.YPHIVRYTSNYYCRMGHCFKTNPGVCVSFTDEFPY.SENV-..QPGVYCADSGFQLLTNFIIGTVTGVHIFTSTAALLGS--TCFILLCV-FAILAFQRLFKEYTTFVLHTLIIAGVNIIGIALVYKFTALAIVYYAIYLYCILTFVPIKRNIALFYFAVVLVPHISNMQL-l
R1AB_SARS2/2788-3142                   ............................................YLITPVHVMS.KHTDFSS.EIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQR.GG..S..YTNDKACPLIAAVIT....RE.VGFV..VPGLPGTILRT.tNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYTDFATS....ACVLAAECTIFKDASGKPVPYCYD.TNVLE...............G.SVAYESLRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVL.NNDYYrsLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT-i
A0A096XNJ3_9ALPC/2485-2837             ...................................ycavwvssi-------NFK.PATFDSV.PEYDFRYIEDGAMKFFSKELPCVYNLYKDFPDWHKQR.FG..S.vPTFSSSCPIIVGAND....-L.NTNV..VPNVASNVALS..-GRILVF.....................TYQT..L...FGHSK...LCFNDAYNSNMAKISAGdcerAAIFPSACTTLQGVGGR-QVYCFT.DGLYA...............G.AKLYSDIMPHLRYYSDV..N.NY..VML..PEVIMRGfGFKITRFLEETYCRVGECAKSNAGICVSADEWYVY.DKDLG..-DSYVCSKDFKGLVWAFLSVFNANIGTVLLTGQLTFNAFIACAIVGICYTFVKFKRIFGDMSTLVLMVLAATFINSMSYLLTV-NFLFLMLYTCVYFISTRKV--HFPMVWDFMYVVAYVFVAPWYVIV.
I1VWF4_CVH22/2512-2852                 .................................qfylcffmpyf----------.-DTVRSF.EGYDFKYIENGQLKNFEAPLKCVRNVFENFEDWHYAK.FG..F.iPLNKQSCPIVVGVSE....--.IVNT..VAGIPSNVYLV..GKTLIFT.....................LQAA..F...-GNAG...VCYDIFGVTT-----PE....KCIFTSACTRLEGLGGNN-VYCYN.TDLME...............G.SLPYSSIQANAYYKYDN..G.NF..IKL..PEVIAQGfGFRTVRTIATKYCRVGECVDSNAGVCFGFDKWFVN.DGRV-..DNGYVCGTGLWNLVFNIFSMFSSSFSVAAMSGQILLNCALGAFAIFCCFLVTKFRRMFGDLSVGVCTVVMAVLLNNVSYIVTQ-NLVTMIAYAVLYFFATRSL--RYAWIWCAAYLIAYISFAPWWLC-a
A3EXI9_BCHK9/2629-2979                 ..........................................qw--FTPWYIMR.P---IEY.NVVDFKVIDNAVIRDITPADQCFANKFSAFENWYSNR.YG..S..YVNSRSCPMVVGVVS....DV.VGSL..VPGLPARFLRV..GTTLLPL.....................VNYG..L...GAVGS...VCYTPYHAINYDVFDTS....ACVLAATCTLFASANGEPMPYCAD.SALIQ...............N.ASRYDTLNPHVMYPFYE.hA.GY..IRF..PEVIS-A.GIHIVRTMAMEYCKVGRCDVSEAGLCMSLQPRWVV.NNAYFrqQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGALLAVVVSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYATCYFGSDIACMMHVSFLIMFAGVVPLWVTV.
A0A0S2ZX33_9GAMC/2299-2656             ............................etnrsfvhpmydsnst----------.------L.HVEGFKVIDKGVIREIVSEDNCFSNKYTNFDAFWGK-.--..P..YANSRECPIVTAIID....G-.AGTI..AAGVPGFVDWV..LDGAMFIhmvqt...........erkpwYIPA..W...FNREI...VGYTRDSIITEGSFYTS....IALFSARCLYLT-ASNTPQLYCFNgDNDAP...............G.ALPFGSIIPHRVYFQPN..G.VR..LIV..PQQIL-H.TPYIVKFVSDSYCRGSVCEYTRPGYCVSLNSHWVL.FNEEYtsKPGVFCGSTVRELMFNMVSTFFTGVNP-NIYMQLATMFLILVVVILIFAMVIKFQGVFKAYATIVFTIMLVWVVNAFILCVHSYNSVVAVILLVIYCYASLVTSRNTAIIMHCWLVFTFGLIVPIWLA-c
D9J203_9ALPC/2396-2748                 ..........................................gl--FSCYNGYT.PTYVTSA.VGYDFMLIKNGKIQGFDDTIDCVHNVYKDFPLWYKGK.YG.rQ..ITYSRACPIVVGTVF....DL.VDNMrpVPDVPAYVTLV..-GRSLIF.....................AINA..V...FGNTD...LCYDHQGVAKSRNSMFD....NCVYNAACTQLTGIGGTA-IYCFK.EGVMNgn...........ilQ.HKTYSEIVPETFYELKD..G.NM..IKL..PTIIRGL.GLRIVQTLATTYCRVGECTQSKEGFCVGLDNWFVY.DKNFG..-ESYICGDSVFGFATNVFRLFNQNLSVVATSGYMITNLIIALCAIAVCYFFLKFKRVFGDCSMLVIMIVIALLCNNVSYFFTR-NLVLMIVYATFYYFLSRRL--PYPGVMDLGFIIAYFNMAPWWILV.
Q2QKN6_9BETC/2772-3128                 ............................................WCLMPTYAVY.KSDFQLP.VYASYKVLDNGVIRDISVEDVCFANKFEQFDQWYEST.FG.lN.yYSNNMACPIVVAVID....QD.IGST..VFNVPTKVLRY..GYHVLHF.....................ITHA..F...SADGV...QCYTPHSQISYSTFYAS....GCVLSSACTMFAMADGRPQPYCYT.EGLMQ...............N.ASLYSSLVPHVRYNLAN.aK.GF..IRF..PEVLREG.LVRIVRTRSMSYCRVGLCEDADEGVCFNFNGSWVL.NNEYYrsLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSVVFVNVVVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPYEISVIMHLQWLVMYGTIMPLWFC-l
Q6UZF5_SARS/2725-3119                  ...rqvvnvittkislkggkivstcfklmlkatllcvlaalvcy-IVMPVHTLS.IHDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S..YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............G.SISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a
R1A_CVHN5/2810-3166                    ...........................................w-ALLPTYSVY.KSDIHLP.AYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYEST.FG..SvyYHNSMDCPIVVAVMD....ED.IGST..MFNVPTKVLRY..GFHVLHF.....................LTYA..F...ASDSV...QCYTPHIQISYNDFYAS....GCVLSSLCTMFKRGDGTPHPYCYT.DGVMK...............N.ASLYTSLVPHTRYSLAN.sN.GF..IRF..PDVISEG.IVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVL.NNDYYrsMPGTFCGRDFFDLFYQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCV.
B1PHI7_9ALPC/2745-3085                 ........................................tffl----CLSISE.GLVATSF.ADFGFKYIKDGVMHDFDQPLSCVHNVFDNFNSWHEAR.FG..S.iPSNMLKCPIVVGTLD....D-.-VRN..VPGVPSGIVLV..GKTLVFA.....................IKAV..F...TDAGN...-CYGLNGLTT-----AG....ACLFNSACTKLEGLGGT-HVYCYK.DGLFE...............G.SKRYFDLVPHSNYKMED..G.NF..VKL..PETLVNGfGINIIRTMETTYCRVGECLKSKAGVCFGANRFFVY.NDDFG..-SDYICGNGLMSFVKNLFNTFTMSLSVMALSGQVIFNCVVAAMAIFICFLVVKFKRMFGDLSYGVCSVIAAVTINNLSYVFTQ-NMLFMFVYATFYFLAVRNL--NYAWIWHASYVVAYFNLAPWFIIV.
K4K1U5_9ALPC/2539-2879                 ...................................vflatgfvd---------Y.TSMVVSA.SDYDFRYIEGGKLKVFETPLKCVHNTFANFDNWYNSK.FG.fT..PSKDKRCPIVVGVSN....--.EART..IPGVPSGVFLF..GKTLVFA.....................LQTV..F...GG-SH...TCYDMTGPAP-----LD....RCIFDSACTTLNGLGGER-VYCYK.NGLVE...............G.SLLYTDLQPNSYYSLPV..G.GY..VRL..PEVITSGlGFRTVRTQQTTYCRMGECVDSKAGICFGANRFLVY.SAESG..-MDFVCGTGLLSLLLNVFNMFSSSFSVLAMSGQIVFNCVLTCVVIMTCLLVTKLKRMFGDLSLGVCTVVCVAIVNNLSYIITQ-NAVMMVVYAILYFLSTRTF--KYGWIWHVGYCIAYLSMAPWWLL-f
A0A120I2U3_9ALPC/2413-2760             ..........................................gl--CSVYSAAT.QSYIESA.EGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAK.YG..F.iPTFGKSCPIVVGTVF....DLeNMRP..IPDVPAYVSIV..-GRSLVF.....................AINA..A...FGVTN...MCYDHTGNAVSKDSYFD....TCVFNTACTTLTGLGGTI-VYCAK.QGLVE...............G.AKLYSDLMPDYYYEHAS..G.NM..VKL..PAIIRGL.GLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVY.DNEFG..-NGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQ-NTFFMIIYAIVYYFTTRKL--AYPGVLDAGFIIAYINMAPWYVI-t
A8JNZ1_9ALPC/2483-2823                 .................................lfvllncvgft----------.-EYASSL.PGYDFKYIEDGQLKPFVNGLYCVRNTFDTFMDWHAQK.FG.fK..PSNSDKCPIVVGASD....--.SGRV..VPGVASDVYLL..GKTLIFT.....................LKTV..F...GSAGH...-CYDVNGIAD-----GD....KCLFNSACTNLEGLGGTR-TYCYK.TGLIE...............G.AMTYGDLQHDSYYRLSG..D.NY..VRL..PYVVVQGlGFRAVRTQATTYCRVGECVDSKAGMCFGADRWMVY.SNDIG..-SDFICGSSLVDLLRNILSVFNYNFSTMIMSGQVIFNCVLACVVVFGCYFVMKFRRVFGDMSLAVFTVCAAVVVNNLSYFVSL-NYVGMVVYSFLYFISTRGL--KYCFIWDVSYVVAYCLLAPWWLL-t
R1AB_BC512/2555-2894                   .........................................fva--TSLLDFSA.Q--VTSD.TQYDFKYIENGVLKVFEKPLDCVHNAFVNFNEWHNAK.FG..S.iPTNSRRCPIVVGTSD....E-.-VRY..IPGVPAGVFLY..-GKSLIF.....................AMST..I...FGTSG...LCFDDRGLTD-----PD....SCIFNSACTTLSGIGGRN-VYCYR.EGVVD...............N.AKLYSSLLPHSYYRLMD..G.NH..IVL..PEIITRGfGIRTIKTQAMTYCRTGECIDSQAGVCVGLDRFFVY.SKTPG..-SDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQILLNCVVAFTAVMACFAFTKFKRLFGDMSFGVLSVGLCTVVNNLSYVVTQ-NSIGMLAYATLYFLCTKGV--RYSWVWHVGFAISYCFLAPWWVV-l
R1A_IBVB/2299-2657                     ..............................mevsksfvhpmydv----------.----NSTlHVEGFKVIDKGVLREIVPEDTCFSNKFVNFDAFWGR-.--..P..YDNSRNCPIVTAVID....GD.-GTV..ATGVPGFVSWV..MDGVMFIhmtqt...........erkpwYIPT..W...FNREI...VGYTQDSIITEGSFYTS....IALFSARCLYLT-ASNTPQLYCFNgDNDAP...............G.ALPFGSIIPHRVYFQPN..G.VR..LIV..PQQIL-H.TPYVVKFVSDSYCRGSVCEYTRPGYCVSLNPQWVL.FNDEYtsKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLATMFLILVVVVLIFAMVIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVIIMHCWLVFTFGLIVPTWLA-c
A0A0U1WHG4_9ALPC/2500-2838             .......................................faigl-----LDFST.T--VTSA.SEYDFKYIIGGKLQSFEKPLDCVHNVFDNFNTWFQAK.FG..F.vPRNSRSCPIVVGVND....E-.-ARV..IPGVASGVSLV..DKTLVFA.....................TKSV..F...AN-SA...TCYDITGPAP-----AE....RCVFNSACTTLNGLGGLA-TYCYK.NGLVD...............G.AKLYTDLQPNSHYSMAD..G.GY..VKL..PDVLASGfGFRTVKTQETTYCRVGQCVNSKAGVCFGANRFLVY.NEDSG..-TDFVCGTGLMSLMYNLLSVFSSSFSVMAMSGQIVLNCAVALFAIFACMLVTKFKRMFGDLSLGVCSVICVAIVNNLSYIVTQ-NAVTMVAYAVLYFLCTRTF--RYSWIYHTGYCIAYFTLAPWWLI-f
R1AB_BCHK5/2862-3217                   ............................................YLCLPAFNMS.QVSFHED.RILTYKVVENGIIRDITPSDTCFANKYQSFSKWFNEH.YG..G.lFNNDISCPVTVAVIA....GV.AGAR..VPNLPANVAWV..GRQIVLF.....................VSRV..F...ASSNN...VCYTPTAEIPYERFSDS....GCVLASECTLFRDAEGKINPYCYD.PTVLP...............G.ASAYDQMKPHVRYDMYD.sD.MY..IKF..PEVVFES.TLRITKTLATRYCRFGSCEDANEGVCITTNGSWAI.YNDHYanKPGVYCGDNYFDIVRRLGLSLFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVAVAAALLNSLCLCFVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMV-f
R1AB_IBVB/2299-2657                    ..............................mevsksfvhpmydv----------.----NSTlHVEGFKVIDKGVLREIVPEDTCFSNKFVNFDAFWGR-.--..P..YDNSRNCPIVTAVID....GD.-GTV..ATGVPGFVSWV..MDGVMFIhmtqt...........erkpwYIPT..W...FNREI...VGYTQDSIITEGSFYTS....IALFSARCLYLT-ASNTPQLYCFNgDNDAP...............G.ALPFGSIIPHRVYFQPN..G.VR..LIV..PQQIL-H.TPYVVKFVSDSYCRGSVCEYTRPGYCVSLNPQWVL.FNDEYtsKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLATMFLILVVVVLIFAMVIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVIIMHCWLVFTFGLIVPTWLA-c
A8JNZ0_9ALPC/2483-2823                 .................................lfvllncvgft----------.-EYASSL.PGYDFKYIEDGQLKPFVNGLYCVRNTFDTFMDWHAQK.FG.fK..PSNSDKCPIVVGASD....--.SGRV..VPGVASDVYLL..GKTLIFT.....................LKTV..F...GSAGH...-CYDVNGIAD-----GD....KCLFNSACTNLEGLGGTR-TYCYK.TGLIE...............G.AMTYGDLQHDSYYRLSG..D.NY..VRL..PYVVVQGlGFRAVRTQATTYCRVGECVDSKAGMCFGADRWMVY.SNDIG..-SDFICGSSLVDLLRNILSVFNYNFSTMIMSGQVIFNCVLACVVVFGCYFVMKFRRVFGDMSLAVFTVCAAVVVNNLSYFVSL-NYVGMVVYSFLYFISTRGL--KYCFIWDVSYVVAYCLLAPWWLL-t
C0KYT7_9BETC/2859-3215                 ...........................................w-ALMPTYAVH.KSDMQLP.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FG.lA.yYRNSKACPVVVAVID....QD.IGHT..LFNVPTTVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.GGVMH...............N.ASLYSSLAPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNRSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFC-i
R1AB_SARS/2725-3119                    ...rqvvnvittkislkggkivstcfklmlkatllcvlaalvcy-IVMPVHTLS.IHDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S..YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............G.SISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a
C6GHB5_9ALPC/2425-2772                 ..........................................gl--CSVYSVAT.QSYIASA.EGYDYMVIKNGVVQPFDGSIKCVHNTYKGFAVWFKAK.YG..F.vPTFDKSCPIVLGTVF....-D.LGNMrpIPDVPAYVALV..-GRSLVF.....................AINA..A...FGVTN...VCYDHMGAAVSKNSYFD....TCVFNSACTTLTGLGGT-VVYCAK.QGLVD...............G.AKLYSELLPDYYYEHAS..G.NM..VKI..PAIIRGF.GLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVY.DKEFG..-DGYICGSSTLGFFKNVFALFNSNTSVVATSGAMLANIIIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLIVNNVSYFVTQ-NTFFMIVYAIIYYFTTRKL--AYPGILDAGFIIAYMNMAPWYVLV.
A0A0U1WHC6_9ALPC/2645-2985             ...............................fffllnasefgyv----------.---ATSF.EDFGFKFIENGVLKDFEGPLQCVHNVFDNFNVWHEAR.YG.vT..PINRRSCPIVVGTMD....N-.-IRF..VPNVPSGILLV..GKTLVFA.....................VKAV..F...TETGN...-CFDLSGLTT-----MG....SCIFNSACTNMDGLGGPA-TYCYK.EGLVE...............N.SKLYADLVPHSHYKLED..G.NY..VKL..PETLARGlGFVTIKTMETTYCRIGECLDSKAGVCFGMDRFFVY.NTEFG..-GDYICGSGFLSFFRNVLGIFTSSFSVMALSGQVMFNCIVAAVAVVVCFLVIKFKRMFGDLSMGVCTVVAAVFVNNVSYIVTQ-NMLFMFLYAIFYFLAVKGL--KYAWIWHLGYVVAYFTLAPWFLV-a
H9BR07_9NIDO/2011-2380                 .................................caaaqltlhav----------.-PTTKSDiRVSNFYVIRDGVLDTIRSTDNCFANKFLSFDSFHQA-.--..P..YTDSPACPVVVGVAD....-V.KTQS..VPGIPAGLVMR..DNLVLHIyelstyerdqrasmvrdalalRTNS..I...FNLDNrvvVGYTQYEVVVGSSYIRS....PALFNAKCTYLQ-LDGNRTLYCYD.AVDRP...............-.HKLYSEVLPHVEYQAVDfnG.DV..VPFkiPEQII-Y.YPHVVRYVSNSYCRMGHCFNTNPGICVSFTDDFPY.SENNV..-PGVYCADTTFKLASKLLVGTVSGIHVFTSTAALIAS--TAVIILCVV-LVLAIQRLFKEYTTFVMYTCGLAVVNLVGIALMYKCIALAFLFYAIYLYFVFTFPSLKRSVALFYFSVVMLPHISNMQL-l
B3FHU4_CVTKE/2301-2657                 ..............................mnkifvhpmydvns----------.-----TM.HVEGFKVIDKGVIRDIVPEDACFSNKFANFDAFWGK-.--..S..YENSRDCPIVTAIID....G-.AGTV..AAGVPGFVDWV..MNGVMFVhmaqt...........drrpwYVPA..W...FNREI...VGYTQDSIVTEGSFYTS....IALFSARCLYLI-ASNTPQLYCFNgDSDAP...............G.ALPFSSIIPHRVYFQPN..G.VR..LIV..PQQIM-H.TPYIVKLLSDSYCRGSVCEYTKPGYCMSLNSQWVL.FNDEYigRPGVFCGSTVRELVFNMVSTFFTGVNP-NIYMQLATMFLILVIVVLIFAMVIKFQGVFKAYATIVFTIMLVWAVNAFVLCVHSYNSVVAAILLVLYCYASLVTSRNTSIIMHCWLVFTFGLIVPIWLA-c
I7AWB5_9BETC/2862-3218                 ...........................................w-ALMPTYAVH.KSDMQLP.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FGlvY..YRNSKACPVVVAVID....QD.IGHT..LFNVPTKVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.EGVMH...............N.ASLYSSLVPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNSSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVQPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFC-i
R1A_BCHK5/2862-3217                    ............................................YLCLPAFNMS.QVSFHED.RILTYKVVENGIIRDITPSDTCFANKYQSFSKWFNEH.YG..G.lFNNDISCPVTVAVIA....GV.AGAR..VPNLPANVAWV..GRQIVLF.....................VSRV..F...ASSNN...VCYTPTAEIPYERFSDS....GCVLASECTLFRDAEGKINPYCYD.PTVLP...............G.ASAYDQMKPHVRYDMYD.sD.MY..IKF..PEVVFES.TLRITKTLATRYCRFGSCEDANEGVCITTNGSWAI.YNDHYanKPGVYCGDNYFDIVRRLGLSLFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVAVAAALLNSLCLCFVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMV-f
I1VWF3_CVH22/2512-2852                 .................................qfylcffmpyf----------.-DTVRSF.EGYDFKYIENGQLKNFEAPLKCVRNVFENFEDWHYAK.FG..F.iPLNKQSCPIVVGVSE....--.IVNT..VAGIPSNVYLV..GKTLIFT.....................LQAA..F...-GNAG...VCYDIFGVTT-----PE....KCIFTSACTRLEGLGGNN-VYCYN.TDLME...............G.SLPYSSIQANAYYKYDN..G.NF..IKL..PEVIAQGfGFRTVRTIATKYCRVGECVDSNAGVCFGFDKWFVN.DGRV-..DNGYVCGTGLWNLVFNIFSMFSSSFSVAAMSGQILLNCALGAFAIFCCFLVTKFRRMFGDLSVGVCTVVMAVLLNNVSYIVTQ-NLVTMIAYAVLYFFATRSL--RYAWIWCAAYLIAYISFAPWWLC-a
H9BQZ9_9NIDO/2033-2402                 ......................................flanqi------TLNT.VPTTKSDiRASTFYVVRDGVLDTIRSNDKCFANKFMAFDSFIQA-.--..P..YTNSPDCPVVVGVVD....-V.TTHS..IPGIPAGVIHR..DGLILNIyeqaiyethqrqsmvrdalslKTAN..L...FNLGKrvvVGYTQHEVVVGTSYLNS....PALFNAKCTFLQ-YQGNRHLYCYD.AVP-T...............E.HKLYSDVLPHVEYKAIDinG.DL..VPFkiPEQIM-F.YPHIVRYTSNSYCRMGHCFNTNPGICISFTDEFPY.SENV-..KPGVYCADTSLQLLSNLVLGTVSGIHIFTSTAALLGST--IVIILCVV-AVLAVQRFFKEYTTFVMYTCGLAFVNIIGIALMYKCLVFAIFYYAIYLYFVLTFPSFKRNVALFYLAVVIVPHVSNMQL-l
B2BW31_9GAMC/2274-2636                 .........................................lmi---SLIAPTF.TPSVVEL.AASGYKVIDNGVIRPIVETDNCFANKYAGFNDWYYGF.VG..K.yPYNSVDCPVVVALTTimdaNM.KGAI..VPGYAGNMAWL..NGQIVHY.....................RHEFswFtgsSAEGI...VGYTRDIVVYGEDFIKS....LALISARCVKLMMVSER--LYCYGgSNDAI...............D.ALPFTAIQPHVVYNDAI..GvGK..LVV..PEQLL-Y.KPYIVYTQAREYCRAGVCEQAKEGYCINFNGEWAL.FNQHYtsKDGVYCGETPMSVVMSIINAYIYQGTTTSFFNRFCVLSVMMLIALVALVYVVKFQAFFKTYAGLACAILLSWGFNAIMLLSYSVNPIVVMPLIVVYMYVALTVTTPTAIIMHVAFLVTIVPMLPYSLM-a
A0A125R5A3_9ALPC/2425-2772             ..........................................gl--CSIYSVAT.QSYIDSA.EGYDYMVIKNGVVQPFDDSINCVHNTYKGFAVWFKAK.YG..F.vPTFDKSCPIVLGTVF....-D.LGNMrpIPDVPAYVALV..-GRSLVF.....................AINA..A...FGVTN...VCYDHTGTAVSKGSYFD....TCVFNSACTTLAGLGGT-VVYCAK.QGLVE...............G.AKLYSELMPDYYYEHAS..G.NM..VKI..PAIIRGF.GLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVY.DKEFG..-DGYICASSTMGFFKNVFALFNSNMSVVATSGAMLANIVIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLVVNNVSYFVTQ-NTFFMIVYAITYYFTTRKL--AYPGILDAGFIIAYVNMAPWYVLV.
H9BR16_9NIDO/2000-2375                 .........................................cfv---TWLFTLT.PPTTMSHvEASNFRVIRNGVIDSIRADDYCFSNKYVAFDSFISR-.--..P..YINFPSCPVVIANVY....-V.AGDS..VPGIPGHLFHR..DNIIMHAydlhkyt.......lqhlfetPAST..W...NVPEV...AGYTQYSAVQ-GSYKDS....YALFTSKCTYLS-YKGDRELYCYD.NMTVQetlsfmgevetvinkT.VKLYSELKPHVRYMTDTvdG.KIhdVII..PEQLW-Y.VPYLVKFTTNLYCRIGECFKTNPGYCLSFTNKFVV.NDGIQ..QPGVYCGDTLVQLLTNMFFGVVSATDIMKSSTALLLST---SLIIGIVFLVMLFQRIFKQYTSFVGVVVLNAFLNIIGLIILTICKPLAYGFFGLYFYVTLTLTPITRSIIYVFMVVTLLPHVSNLLL-l
R1A_BC512/2555-2894                    .........................................fva--TSLLDFSA.Q--VTSD.TQYDFKYIENGVLKVFEKPLDCVHNAFVNFNEWHNAK.FG..S.iPTNSRRCPIVVGTSD....E-.-VRY..IPGVPAGVFLY..-GKSLIF.....................AMST..I...FGTSG...LCFDDRGLTD-----PD....SCIFNSACTTLSGIGGRN-VYCYR.EGVVD...............N.AKLYSSLLPHSYYRLMD..G.NH..IVL..PEIITRGfGIRTIKTQAMTYCRTGECIDSQAGVCVGLDRFFVY.SKTPG..-SDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQILLNCVVAFTAVMACFAFTKFKRLFGDMSFGVLSVGLCTVVNNLSYVVTQ-NSIGMLAYATLYFLCTKGV--RYSWVWHVGFAISYCFLAPWWVV-l
A0A0U1WHL2_BCHK5/2862-3217             ............................................YLCLPAFNMS.QVAFHED.RILTYKVVENGIIRDITPSDACFANKYQSFAKWFNEN.HG.gL..FQNSIDCPVTVAVIA....GV.AGAR..VPNLPANVAWV..GRQIVLF.....................VSRV..F...ASSNN...VCYTPTAEIPYERFSDS....GCVLASECTLFRDAEGKINPYCYD.PTVLP...............G.ASAYDQMKPHVRYDMYD.sD.MY..IKF..PEVVFES.TLRITKTLATRYCRFGSCEDANEGVCITTNGSWAI.YNDHYanKPGVYCGDNYFDIVRRLGLSLFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVAVAAALLNSLCLCFVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMV-f
R1AB_CVH22/2508-2847                   .......................................lcffm----PYFMYD.I--VSSF.EGYDFKYIENGQLKNFEAPLKCVRNVFENFEDWHYAK.FG.fT..PLNKQSCPIVVGVSE....--.IVNT..VAGIPSNVYLV..GKTLIFT.....................LQAA..F...-GNAG...VCYDIFGVTT-----PE....KCIFTSACTRLEGLGGNN-VYCYN.TALME...............G.SLPYSSIQANAYYKYDN..G.NF..IKL..PEVIAQGfGFRTVRTIATKYCRVGECVESNAGVCFGFDKWFVN.DGRVA..-NGYVCGTGLWNLVFNILSMFSSSFSVAAMSGQILLNCALGAFAIFCCFLVTKFRRMFGDLSVGVCTVVVAVLLNNVSYIVTQ-NLVTMIAYAILYFFATRSL--RYAWIWCAAYLIAYISFAPWWLC-a
D9J202_9ALPC/2396-2748                 ..........................................gl--FSCYNGYT.PTYVTSA.VGYDFMLIKNGKIQGFDDTIDCVHNVYKDFPLWYKGK.YG.rQ..ITYSRACPIVVGTVF....DL.VDNMrpVPDVPAYVTLV..-GRSLIF.....................AINA..V...FGNTD...LCYDHQGVAKSRNSMFD....NCVYNAACTQLTGIGGTA-IYCFK.EGVMNgn...........ilQ.HKTYSEIVPETFYELKD..G.NM..IKL..PTIIRGL.GLRIVQTLATTYCRVGECTQSKEGFCVGLDNWFVY.DKNFG..-ESYICGDSVFGFATNVFRLFNQNLSVVATSGYMITNLIIALCAIAVCYFFLKFKRVFGDCSMLVIMIVIALLCNNVSYFFTR-NLVLMIVYATFYYFLSRRL--PYPGVMDLGFIIAYFNMAPWWILV.
A0A0K1YZY7_SARS/2750-3119              ............................mlkatllcvlaalvcy-IVMPVHTLS.IHDGYTN.EIIGYKAIQDGVTRDIVSTDDCFANKHAGFDAWFSQR.GG..S..YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............G.SISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a
A0A0U1UZC3_9ALPC/2414-2752             ...........................................y-ATSYITFGT.MV--GSF.PGYDFKYIEHGQLQEFSHGLTCVHNVFDNFMEWHFQK.FG.nT..PSTGKACPVIVGVGD....--.NGRT..LPGVPADVHLV..GQTLVFT.....................VKSV..F...-GNTN...LCYDTSGVVS-----AA....SCIFISACTVLEGLGGIS-TYCYK.DGIVE...............G.AKLYSDLQPNAHYKFDN..D.NF..VKL..PEVLARGfGMRTVRTLDTTYCRVGECTESKAGICIGADRWLVY.NAESG..-SDFVCGASLLQLLYNVFRVFNTDFSTAALSGQMMFNVIVAGLAIMACFIITKFKRVFGDMSFGVFTVIITALVCNLSYFVTQ-NYLGLYTFSLLYYLTTRSF--RYEWIWHIGYVVSYYFLAPWWLML.
R1AB_BCHK4/2816-3170                   ...........................................w-FCLPSYSIA.TVNFNDD.RILTYKVIENGIVRDIAPNDVCFANKYGHFSKWFNEN.HG.gV..YRNSMDCPITIAVIA....GV.AGAR..VANVPANLAWV..GKQIVLF.....................VSRV..F...AN-TN...VCFTPINEIPYDTFSDS....GCVLSSECTLFRDAEGNLNPFCYD.PTVLP...............G.ASSYADMKPHVRYDMYD.sD.MY..IKF..PEVIVES.TLRITKTLATQYCRFGSCEESAAGVCISTNGSWAL.YNQNYstRPGIYCGDDYFDIVRRLAISLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGAVVPIWML-a
#=GC seq_cons                          ...........................................h.....h.hhp....hpos.pshsFKlI-NGVl+-lsssDsCFtNKFssFssWaps+.aG..s..hsNucsCPlVVulls....t..hGph..lPsVPutVhhl..stpllah.....................lpps..a...sssus...lCYT.pshls.psa.sS....sClhsotCThhpshsGs..sYCYc.sslhp...............s.AphYosLhPHshYphhs..u.sh..l+h..PEllhpu.slRlV+ThussYCRlGpCpcScsGlChuhsshaVh.ss-ah...sGhaCGsshhsLlhNlhsshspslsshsloupllhssllAhlllhshahllKF+RhFGDYohsVhssllshllNslslhlhp.sshhhhlYushYaYsThhhs.chuhlhHltallhasslsPhWlh.h
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