#=GF ID   DNA_pol_B_3
#=GF AC   PF08408.14
#=GF DE   DNA polymerase family B viral insert
#=GF AU   Wuster A;0000-0003-4162-5931
#=GF SE   Pfam-B_3028 (release 18.0)
#=GF GA   25.50 25.50;
#=GF TC   25.90 66.00;
#=GF NC   25.10 24.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0105
#=GF DR   INTERPRO; IPR013617;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This viral domain is found between the exonuclease domain of the
#=GF CC   DNA polymerase family B (Pfam:PF03104) and the Pfam:PF00136
#=GF CC   domain, connecting the two.
#=GF SQ   47
#=GS G0T3C8_9POXV/349-477      AC G0T3C8.1
#=GS DPOL_VACCC/350-476        AC P20509.1
#=GS A0A223FNA8_9POXV/351-477  AC A0A223FNA8.1
#=GS A0A3F2YKJ8_SHEVT/350-481  AC A0A3F2YKJ8.1
#=GS A0A6B9R1F0_9POXV/351-478  AC A0A6B9R1F0.1
#=GS Q2QJJ3_9POXV/350-476      AC Q2QJJ3.1
#=GS Q6TUX3_YMTV5/350-477      AC Q6TUX3.1
#=GS A0A0H4Y121_9POXV/391-517  AC A0A0H4Y121.1
#=GS DPOL_VACCW/350-476        AC P06856.5
#=GS A0A7H0DN44_MONPV/350-476  AC A0A7H0DN44.1
#=GS Q08FV4_DPV83/349-479      AC Q08FV4.1
#=GS A0A2U9QHN6_9POXV/349-476  AC A0A2U9QHN6.1
#=GS Q6TVU5_ORFSA/355-482      AC Q6TVU5.1
#=GS U3UBH8_9POXV/358-480      AC U3UBH8.1
#=GS Q9Q8R2_MYXVL/350-477      AC Q9Q8R2.1
#=GS A0A220T6B3_9POXV/350-477  AC A0A220T6B3.1
#=GS DPOL_FOWPN/334-462        AC P21402.2
#=GS F1AWX7_ORFV/144-271       AC F1AWX7.1
#=GS W6JLP9_9POXV/432-572      AC W6JLP9.1
#=GS Q9JFD0_VACCT/350-476      AC Q9JFD0.1
#=GS Q8V3Q8_SWPV1/350-478      AC Q8V3Q8.1
#=GS DPOL_VAR67/350-475        AC P0DOO5.1
#=GS H6TA32_9POXV/349-477      AC H6TA32.1
#=GS Q775X7_CAMPS/350-476      AC Q775X7.1
#=GS Q9EMZ8_AMEPV/426-569      AC Q9EMZ8.1
#=GS Q0GP22_HSPV/350-476       AC Q0GP22.1
#=GS F1AWX5_ORFV/355-482       AC F1AWX5.1
#=GS A0A223FMP5_9POXV/351-477  AC A0A223FMP5.1
#=GS G3EIC1_9POXV/351-478      AC G3EIC1.1
#=GS Q070J2_CPRVZ/336-464      AC Q070J2.1
#=GS Q9Q937_RFVKA/349-476      AC Q9Q937.1
#=GS Q91EK5_FOWPV/334-462      AC Q91EK5.1
#=GS E2CZS9_9POXV/350-477      AC E2CZS9.1
#=GS Q98207_MCV1/345-473       AC Q98207.1
#=GS A0A0M3ZCQ4_9POXV/334-462  AC A0A0M3ZCQ4.1
#=GS A0A1V0S7V7_CNPV/334-462   AC A0A1V0S7V7.1
#=GS Q08FD4_DPV84/349-479      AC Q08FD4.1
#=GS D3IZH2_9POXV/351-478      AC D3IZH2.1
#=GS A0A1L3IZE9_9POXV/349-477  AC A0A1L3IZE9.1
#=GS A0A7R5WMB1_9POXV/547-672  AC A0A7R5WMB1.1
#=GS A0A2C9DT12_9POXV/345-477  AC A0A2C9DT12.1
#=GS A0A1B1MR93_9POXV/348-477  AC A0A1B1MR93.1
#=GS Q9DHS3_YLDV/350-477       AC Q9DHS3.1
#=GS Q9YW56_MSEPV/410-548      AC Q9YW56.1
#=GS Q6VZM6_CNPV/334-462       AC Q6VZM6.1
#=GS F1AWX6_ORFV/288-415       AC F1AWX6.1
#=GS A0A1B3B653_LSDV/350-481   AC A0A1B3B653.1
G0T3C8_9POXV/349-477                 .............SKNVFNCKVLIKSVKNG.RCTFIGDNTTDNIGKIDTFLNVLMTGNYINVGD.DIFKIIHKDI.................S...SSSFVIIVED.kDNIF.T..E...NELC.IISFGKDDVNLSD..MYKSYNIDIAIEMGEYCIHDACLCKYLWKYYGM-d
DPOL_VACCC/350-476                   .............SKNAFSCMGKVLNRGVR.EMTFIGDDTTDAKGKAAAFAKVLTTGNYVTVDEdIICKVIRKDI.................W...ENGFKVVLL-..-CPT.L..P...NDTY.KLSFGKDDVDLAQ..MYKDYNLNIALDMARYCIHDACLCQYLWEYYGVE.
A0A223FNA8_9POXV/351-477             .............SKNAFGCVARVENRGLN.TITFVGDDTTDEKGKAESFGNVLTTGNYVTVDDdIICKVIEKEI.................W...NKGFRVVL--..SCKT.L..H...NDTY.KLSFGKDDVDLAE..MYRNYNLDIALDMAKYCIHDACLCQYLWEYYGVE.
A0A3F2YKJ8_SHEVT/350-481             .............SKNAFSCSVKLKSENDN.LVTFVGDNTTDDIGKISSFSEVLSTGNYITIVD.DVFKIVDKSV.................G...NDKFQLTILN..KNNTlK..KnidNDIY.TISFGKDDVNLSD..MYKNYDLNTSIEMAKYCIHDACLCKYLWNYYGIE.
A0A6B9R1F0_9POXV/351-478             .............SKNVFYCTVKVKEINDD.LYTFIGDNTTDVEGRSTTFANVLTTGNYININD.TVYRIINKTI.................N...NDCFTITIKY..NNIL.N..Y...DEKV.RLSFGKDDVNLSD..MYQNYNLKTSIEMGDYCMHDACLCKYIWQYYGIE.
Q2QJJ3_9POXV/350-476                 .............SKNAFSCMGKVLNRGVR.EMTFIGDDTTDAKGKAAAFAKVLTTGNYVTVDDdIICKVIHKDI.................W...ENGFKVVL--..SCPT.L..T...NDTY.KLSFGKDDVDLAQ..MYKDYNLNIALDMARYCIHDACLCQYLWEYYGVE.
Q6TUX3_YMTV5/350-477                 .............SKNVFSCNTKLITVENS.HCTFVGNSLTDVKGKSLLFSKVLSTGNYITIND.DVYKILKKVF.................N...CDEFYVTVKC..NKTL.E..I...GNFY.RLSFGKDDVNLSE..MYSNYDLQTSLEMGKYCIHDACLCKYLWDYYGVE.
A0A0H4Y121_9POXV/391-517             .............SKKNFNGYGTLVKKGTD.HWTWEFRSTKN--KSLYFLTKLLESAGFINLDN.YCLPICNKVI.................T...ETVLSFQTPY.lPLHI.N..L...ETEQ.YFEFGKDDVEIDK..IYINYNMKIAEEIAPYCQHDSNLCLFLWEKYNI-k
DPOL_VACCW/350-476                   .............SKNAFSCMGKVLNRGVR.EMTFIGDDTTDAKGKAAAFAKVLTTGNYVTVDEdIICKVIRKDI.................W...ENGFKVVLL-..-CPT.L..P...NDTY.KLSFGKDDVDLAQ..MYKDYNLNIALDMARYCIHDACLCQYLWEYYGVE.
A0A7H0DN44_MONPV/350-476             .............SKNAFSCMGKVLNRGVR.EMTFIGDDTTDAKGKADTFAKVLTTGNYVTVDEdIICKVIRKDI.................L...ENGFKVVL--..SCPT.L..P...NDIY.KLSFGKDDIDLAQ..MYKDYNLNIALDMARYCIHDACLCQYLWEYYGVE.
Q08FV4_DPV83/349-479                 .............SKNVFNCVTELIETDNN.VCTFIGNSTTDTKGKSEIFSEVLSTGNYITIGD.DIYKILEKKI.................Ny.eSESFELKILD.kNNSF.T..K...GEKY.ILSFGKDDVDLSE..MYKNYNLDIAIEMGNYCMHDACLCKYLWNYYGIE.
A0A2U9QHN6_9POXV/349-476             ............a-KHAFACKTIAYKHKDR.YWKFIGNETTDVKGKAIIFSKVLSTGNYITMND.TVYKIIEKKC.................E...YNSFHVVIDV..RQTL.L..E...EEIY.ELSFGKDDIDLAT..MYQNFTIKTAIEMADYCLHDACLCYYLWIHYGIE.
Q6TVU5_ORFSA/355-482                 .............SKNAFHCTAVVEDARPD.AVRFRGDRSTDADGNAAVFARVLSTGNYVTVDE.RVCRVLHKRV.................D...EGGFTVDLAD..SAAR.A..P...GDRV.TLAFGKDDVSLAD..MYANYSLDVCLDMARYCLHDACLCLYLWSHYGVE.
U3UBH8_9POXV/358-480                 .............SKNAFHCRARVTEAVGD.CCVFEGD---DAPSRVRAFAEVLSTGNYITIAD.GVYKVLEKRV.................A...DGRFELRVR-..-FGA.A..A...GETH.ELSFGKDDVDLAA..MYRDYDLDVALEMARYCVHDASLCKYLWHFYGME.
Q9Q8R2_MYXVL/350-477                 .............SKNVFNCDCVLTEIQND.TMTFVGDHTTDAKATVNVFSQVLSTGNYINIGD.DIFKVFNKTI.................T...KDSFTLTVKA..NPSY.T..V...HNTY.TLSFGKDDVNLSD..MYKNYNLDVAVEMGNYCLHDACLCKYLWNYYGIE.
A0A220T6B3_9POXV/350-477             .............SKNVFNCMCKITKYDGV.MCTFEGNNTTDIPGMATSFAKVLTTGNYVMIGD.DVCKIINKTI.................N...ENGFTITLKY..KKPI.N..E...SELY.NISFGKDDVDLSQ..MYKNYNLDIAIEMANYCIHDACLCKYLWNYYGVE.
DPOL_FOWPN/334-462                   .............SKNIFNCNVAIKEIDDT.ILTLEATVKDNSKDKLSIFSRVLETGNYITIGDnNVSKIVYKDI.................N...QDSFIIKVIS..NRDY.E..I...GSVH.NISFGKDDVDLKD..MYKNYNLEIALDMERYCIHDACLCKYIWDYYRV-p
F1AWX7_ORFV/144-271                  .............SKNAFHCTAVVEDARPN.AVRFRGDRSTDADGNAAVFARVLSTGNYVTVDE.RVCRVLHKRV.................G...EGGFTVDLAD..PAAR.A..P...GDRV.TLAFGKDDVSLAD..MYANYSLDVCLDMARYCLHDACLCLYLWSHYGVE.
W6JLP9_9POXV/432-572                 ............a-KYKFNINAKTVTDGK-.ITTVYPYESSNI--KKEMFYKVLRTANYCFIND.KAFKIYDKKNiinnesdlynfesikksI...GKEFKIY---..NNDI.E..I...SNNV.EITLSKDDVEIWDknAYKNYKLSKAKDIAFYCVHDTILCNKLFEIDMID.
Q9JFD0_VACCT/350-476                 .............SKNAFSCMGKVLNRGVR.EMTFIGDDTTDAKGKAAAFAKVLTTGNYVTVDEdIICKVIRKDI.................W...ENGFKVVLL-..-CPT.L..P...NDTY.KLSFGKDDVDLAQ..MYKDYNLNIALDMARYCIHDACLCQYLWEYYGVE.
Q8V3Q8_SWPV1/350-478                 .............SKNVFHCTVKYHTIVNE.LCEFICNDNIDNKDTIKIFSEVLLTGNYITIQD.DILRIVDKKI.................T...DSGFKIYVHD.kKNIF.I..L...GNTY.TVSFGKDDVNLSD..MYKSYNIDTAIDMANYCIHDACLCKYLWNYYGIE.
DPOL_VAR67/350-475                   .............SKNAFSCMGKVLNRGVR.EMTFIGDDTTDAKGKAAVFAKVLTTGNYVTVDD.IICKVIHKDI.................W...ENGFKVVL--..SCPT.L..T...NDTY.KLSFGKDDVDLAQ..MYKDYNLNIALDMARYCIHDACLCQYLWEYYGVE.
H6TA32_9POXV/349-477                 .............SKNVFNCKVLIKSVKNG.RCTFIGDNTTDNIGKIDTFLNVLMTGNYINVGD.DIFKIIHKDI.................S...SSSFVIIVED.kDNIF.T..E...NELC.IISFGKDDVNLSD..MYKSYNIDIAIEMGEYCIHDACLCKYLWKYYGM-d
Q775X7_CAMPS/350-476                 .............SKNAFSCMGKVLNRGVR.EMTFIGDNTTDAKGKAAAFAKVLTTGNYVTVDDdIICKVIHKDI.................W...ENGFKVVL--..SCPT.L..T...NDTY.KLSFGKDDVDLAQ..MYKDYNLNIALDMARYCIHDACLCQYLWEYYGVE.
Q9EMZ8_AMEPV/426-569                 .............TKERFNIFCKISYNNNE.-YIIEPLNTKANKNKISIFYDVIRTANYCFINN.NPYKIKNKTEiiddieklydltsiknsH...NKKFTIY---..ENDI.P..I...NDNYaTVMLSKDDVDIGDknAYVNFTKEKSDNIAYYCTHDTVLCNCIFKYDMIH.
Q0GP22_HSPV/350-476                  .............SKNAFSCMGKVLNRGVR.EMTFIGNDTTDAKGKAAAFAKVLTTGNYVTVDEdIICKVIRKDI.................W...ENGFKVVLL-..-CPT.L..P...NDTY.KLSFGKDDVDLAQ..MYKDYNLNIALDMARYCIHDACLCQYLWEYYGVE.
F1AWX5_ORFV/355-482                  .............SKNAFHCTAVVEDARPN.AVRFRGDRSTDADGNAAVFARVLSTGNYVTVDE.RVCRVLHKRV.................G...EGGFTVDLAD..PAAR.A..P...GDRV.TLAFGKDDVSLAD..MYANYSLDVCLDMARYCLHDACLCLYLWSHYGVE.
A0A223FMP5_9POXV/351-477             .............SKNAFGCVARVENRGLN.TMTFVGDDTTDEKGKAEFFGNVLTTGNYVTVDDdIICKVIEKEI.................W...NKGFRVVL--..SCKT.L..H...NDTY.KLSFGKDDVDLAE..MYRNYNLDIALDMAKYCIHDACLCQYLWEYYGVE.
G3EIC1_9POXV/351-478                 .............SKNAFNCISRVEDVGSG.TITFIGDNTTDEKGKAELFGRILSTGNYITIDDdIICKVIEKEI.................Y...DKGFKVILSC..--KY.I..L..nDTTY.KLSFGKDDVDLSE..MYRNYNLDIALDMARYCIHDACLCQYLWEYYGVE.
Q070J2_CPRVZ/336-464                 .............SKNAFRCHALVEAATPDgAATF---REREAGDVARVFREVLTTANYVTVGS.RVHRIAAKSE.................T..gEAGFRVTVAPapGAEY.A..V...GSTH.LLAFGKDDIDLQR..LYGDYRLATAETIAAYCLHDASLCKYIWHYYSVD.
Q9Q937_RFVKA/349-476                 .............SKNVFNCDCILTEMRDG.TMIFVGDSTTDARATVNVFAQVLSTGNYINIGD.DIFKVLEKTI.................T...KNSFTLTVDA..NASY.T..V...KNTY.TLSFGKDDVNLSD..MYKNYNLDVAVEMGNYCLHDACLCKYLWNYYGIE.
Q91EK5_FOWPV/334-462                 .............SKNIFNCNVAIKEIDDT.ILTLEATVKDNSKDKLSIFSRVLETGNYITIGDnNVSKIVYKDI.................N...QDSFIIKVIS..NRDY.E..I...GSVH.NISFGKDDVDLKD..MYKNYNLEIALDMERYCIHDACLCKYIWDYYRV-p
E2CZS9_9POXV/350-477                 .............SKNVFNCDCVLTEIQND.TMTFVGDHTTDAKATVNVFSQVLSTGNYINIGD.DIFKVFNKTI.................T...KDSFTLTVKA..NPSY.T..V...HNTY.TLSFGKDDVNLSD..MYKNYNLDVAVEMGNYCLHDACLCKYLWNYYGIE.
Q98207_MCV1/345-473                  .............SKNVFHCRARVLDAGAG.ECTLAGGPDANAEDRLRLFCEVLQTGNYVTLDTvHVCRILGKRF.................F...EHGFALRVRC..AESY.A..P...GSLC.ELAFGKDDVDLRE..LYRHYSLAAALEMERYCMHDACLCKYLWSYYRV-p
A0A0M3ZCQ4_9POXV/334-462             .............SKNIFNCIGTIKDMSGN.ILTIEANTIENSKDKLDIFITVLSTGNYITIDNlEITEILDKNI.................Q...PDKFVIKVYS..NKQY.D..I...NTCH.LISFGKDDVDLKQ..MYNNYNLETAIKMEKYCIHDACLCKYIWDYYRV-p
A0A1V0S7V7_CNPV/334-462              .............SKNIFNCNGIIKDISEG.VITIEADTSKNTKDKISIFAKVLQTGNYITIGNnDVSKIIYKDI.................K...TDSFTIKVIS..DKEY.E..I...ESIQ.SISFGKDDVDLRS..MYANYNLDIALDMERYCIHDACLCKYIWDYYKI-p
Q08FD4_DPV84/349-479                 .............SKNVFNCVTDLIEIDNN.VCTFIGNSTTDTKGKSEIFSEVLSTGNYITIGD.DIYKILEKKI.................Ny.eSESFELKILD.kNNSF.T..K...GEKY.ILSFGKDDVDLSE..MYKNYNLDIAIEMGNYCMHDACLCKYLWNYYGIE.
D3IZH2_9POXV/351-478                 .............SKNAFHCTAVVEEAREG.AVSFRGDRSTDADGNAAVFARVLSTGNYVTVEE.RVCRVLHKRV.................G...DGGFSVELAD..PAAR.A..P...GDRV.TLAFGKDDVDLAD..MYANYSLDVCLDMARYCLHDACLCLYLWTHYGVE.
A0A1L3IZE9_9POXV/349-477             .............SKNVFNCKVLIKSVKNG.LCTLIGNSTTDNIGKVETFLNVLMTGNYINVGD.DIFKIVHKDI.................S...SSSFVVVVEN.kDNIF.T..E...NELC.IISFGKDDVNLSD..MYKSYNLDIAIEMGEYCMHDACLCKYLWKYYGID.
A0A7R5WMB1_9POXV/547-672             kyfsasfrvkgsi--------------RTK.ELTFYPQEP--DLEKKKIFDDVFKTSNYCYIND.NAFKITEKSE.................KyfkAVSISETLNT..KHFW.D..S...DDLI.SVSLSKDDVEIAT..--DVYFKQNCYEIADYCLHDAILCRHLFTYFNV-l
A0A2C9DT12_9POXV/345-477             .............SKNLFCCLARVEAVEAEdLVTFRGGLADNSADRLHLFAEVLETGNYVTVDSdLVHRILHKDI.................Da.rSGEFRIHVAR.gESEY.R..V...GETY.ELAFGKDDVDLRN..MYRDYSMRIARQIERYCLHDACLCKYIWNYYRI-a
A0A1B1MR93_9POXV/348-477             ............a-KHAFYCKSVACPDKNG.NYMFVGNNSTDAKGKAELFSAVLATGNYITIND.HVCKVVRKEI.................Y...PSEFKVVLDM..KNAF.TpiT...NETY.ELSFGKDNVSLSD..MYKNFTLVTAIEMANYCLHDAVLCKHLWKHYGIE.
Q9DHS3_YLDV/350-477                  .............SKNAFSCNAKIKFVENS.YYTFMGNSLTDVKGKSLLFSKVLSTGNYITIND.EVYKILKKET.................Y...DDEFTVTIKC..NKNL.D..I...DNVY.CLSFGKDDVNLSD..MYANYNLQISLEMGKYCIHDACLCKYLWDYYGVE.
Q9YW56_MSEPV/410-548                 ............c-KTKFNINAIAELIENTnNVKII---PKDTKNKLKIFYSVIRTANYCFIND.IAYQINKNDIidnmqk.....lydkdaI...NQSIGVPFI-..VKNC.N..I...TGNI.VVALSKDDIDIGDksTYENYTIEKANEIGNYCIHDTVLCNKLFETDLI-h
Q6VZM6_CNPV/334-462                  .............SKNIFNCNAIIKDISDD.IITMEAGINENTKDKISIFSEVLQTGNYITIGNsDISKIVYKDI.................R...SDSFTIKVVS..NKPY.E..C...GSIQ.FISFGKDDVDLRS..MYANYNLDIALDMEKYCIHDACLCKYIWDYYKI-p
F1AWX6_ORFV/288-415                  .............SKNAFHCTAVVEDARPN.AVRFRGDRSTDADGNAAVFARVLSTGNYVTVDE.RVCRVLHKRV.................G...EGGFTVDLAD..PAAR.A..P...GDRV.TLAFGKDDVSLAD..MYANYSLDVCLDMARYCLHDACLCLYLWSHYGVE.
A0A1B3B653_LSDV/350-481              .............SKNAFSCSVKLKSENDN.LLTFVGDNTTDDIGKISSFSEVLSTGNYITIVD.DVFKIVDKSV.................G...NDKFQLTILN..KNNTlK..KnidNDIY.TISFGKDDVSLSD..MYKNYDLNTSIEMAKYCIHDACLCKYLWNYYGIE.
#=GC seq_cons                        .............SKNsFsChstlpshsss.thTFhGssoTDscGKsphFucVLoTGNYlTlsD.plhKllcKcI.................t...psuFplslh...sssh.t..h...s-pa.pLSFGKDDV-Lu-..MY+NYNLclAl-MucYClHDACLCpYLWpYYGlE.
//