GenomeNet

Database: Pfam
Entry: DUF3258
LinkDB: DUF3258
Original site: DUF3258 
#=GF ID   DUF3258
#=GF AC   PF11646.12
#=GF DE   Protein of unknown function DUF3258
#=GF AU   Pollington J;0000-0002-8158-8998
#=GF SE   pdb_2oq8
#=GF GA   25.00 25.00;
#=GF TC   25.20 34.90;
#=GF NC   23.30 21.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF DR   INTERPRO; IPR021672;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This viral family are possible phage integrase proteins however
#=GF CC   this cannot be confirmed.
#=GF SQ   6
#=GS Q6TRU4_9VIRU/41-150       AC Q6TRU4.1
#=GS M5DPD7_9GAMM/150-247      AC M5DPD7.1
#=GS Y157_AFV1Y/39-149         AC Q70LE6.1
#=GS A8G180_SHESH/259-357      AC A8G180.1
#=GS A0A1X1QKB1_9GAMM/21-92    AC A0A1X1QKB1.1
#=GS A0A1X9NCJ9_9GAMM/111-208  AC A0A1X9NCJ9.1
Q6TRU4_9VIRU/41-150                  dkyd-----GKLYYRLLPGNYLKFSLHALKKSDYARFSLVHVYISPNGEVEEKEVYSVELSYSKFREIAIEFDVPYQLKEFVRMEP-----EYHRVAKVDESNYPAVEDTLTIANNIMKY.........
M5DPD7_9GAMM/150-247                 ...s-TILFSELCAKFLDHKV-KSGLRNKLQAEYKRFLSDWNELVEDKPIDEYKRKDFK----KFIISISNL-------------PRRNLREYKGKTVIELLEIDVPENHKIAPRTATQY.........
Y157_AFV1Y/39-149                    ....HDRQLGKLHYKLLPGNYIKFGLYVLKNQDYARFEIAWVHVDKDGKIEERTVYSIETYWHIFIDIENDLNCPYVLAKFIEMRP-----EFHKTAWVEESNYSIAEDDIQMVESIKRY.........
A8G180_SHESH/259-357                 .nap---LFSEVYPEFLQHKIEKEKLDDKTQKDYARKYLLWQALVEDKPIDLYTPKDIG----CFIDRCFEL-------------PKMNIRPYSRMSWPERIEADVPDEDMIAPKSVG--hf.......
A0A1X1QKB1_9GAMM/21-92               .ssl---RLSKIHKEFIAYKIKTNNLSSKMQSDYQRYYNVWKELVDDKPVDDYKSSDLKNFLRVVIT-----------------------------------------------------lpkrnlvvv
A0A1X9NCJ9_9GAMM/111-208             .srm---SLSEVFISFLEYKA-RNGLSIRIQQEYRRYFEVILHLLGDKPVDQVTRKCLK----GVIQAYSKM-------------PKRNLGEYRNLGIEELVKVDVPIDHRVAPKTVGQ-v........
#=GC seq_cons                        .p......hSclahcFLsaKh.KpuLps+hQpDYtRah.lWhcLlcDKPlD-hpspslc....tFIphh.ch.............P.....EY+phuh.E..phsls--chhhscoltp..........
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