GenomeNet

Database: Pfam
Entry: DUF4940
LinkDB: DUF4940
Original site: DUF4940 
#=GF ID   DUF4940
#=GF AC   PF16298.9
#=GF DE   Domain of unknown function (DUF4940)
#=GF AU   Chang Y;0000-0002-2418-3433
#=GF SE   Jackhmmer JCSG target TM0732
#=GF GA   28.80 28.80;
#=GF TC   153.70 153.50;
#=GF NC   27.60 27.20;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR032548;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of several uncharacterized proteins around
#=GF CC   250 residues in length and is mainly found in various Thermotoga
#=GF CC   species. The function of this family is unknown.
#=GF SQ   5
#=GS F7YYU5_9THEM/42-249      AC F7YYU5.1
#=GS A8F518_PSELT/42-248      AC A8F518.1
#=GS Q9WZJ1_THEMA/44-247      AC Q9WZJ1.1
#=GS A7HM01_FERNB/34-235      AC A7HM01.1
#=GS A0A0X1KU43_9THEM/42-248  AC A0A0X1KU43.1
F7YYU5_9THEM/42-249                 GYQMQFVKLNTLFGPVIVGF...DKEEFPIQALQSHVEKLLMAKKSYPENISKISDLV-GDWKGERVIGILETEDLQDRMEYRVSLSKFAIDVVNLGKKDLYAFPTADISVGFDCRLSLSMPSSDKLEAIRQACVVDRYAVFKGTLSYDKLL.YHDSFSIHLDEEdvpFIESKLLFRDYEKLARKFS....IRKEEVF.....QRQMQLEQKYWLFFENFVD
A8F518_PSELT/42-248                 GKNLLLIYVDTFLGPAVVAF...EKDIIPVELLKNYLNQICLKVIPYGNLLTEISRVI-SPWKGQKMVGILFTQENEARLKYREQLSKIALNIVNLGEKDLYVLATNYLNIDKSAKFSLSSPSENMIESLRQAFVVDRYVSESGILNYQDIPkYR--VNVRIDPKdidFISDRVSSTDLFQLSQRRK....ISVQSAY.....NQERLIESKYWLRFDIGVD
Q9WZJ1_THEMA/44-247                 GKIFCF-PAQTVLGKMAIFT...DEKTQGRDVLVELLNHELLRMRLYSEEVENLVEVLFNDWRPGKRVFIVRSKNFETRLSLREKLSSFADVIYNAGEIDVGIAPAGTLLQINEEKVSFSDPERDIKEAVRKALLIDRYVNEPFSF-YEKLPaYNFSLNIQIPE-...LVKIFLRTGDIQKTSELTE....KNVEVVF.....REILKFEKKTLLSPRIPVE
A7HM01_FERNB/34-235                 DEKYLLIPYQ--IGDLIVLLevnDEKEIVAQLLDKFVRQWVLENYIYPEEIKILAKHFKTELKKFKILVVKYNSPEEKEFS-RYSLSNVTFGVVSHDNLDIHLLSANT-EIKTKYGYSISDIVETPEEGLRQALLINKWF---GGGNYTELP.-NIALEKQLEEK...--------SDLEKWLELLSyvlfKDIDEKYfgpiiNKLNEFKQETYFNPSKNIE
A0A0X1KU43_9THEM/42-248             GQEILLTCIETVAGRLVLGL...LKDESLGDAVRCYVDQLLLSERRWPDSVEQLASQI-DAWRGKRYVGLLRAMDFAQRYAARERLSSVAIGTLNVGEHDLYIFSTNVLPALLNAKLCVSSACEDPREAIREALLLDRYVVGEGTFFYERLFeYE--LNVKIDDSdleTIAQRLISKDLRSFATRLN....TSLTEAF.....QLQRELEDKYLLRFDIGLE
#=GC seq_cons                       GcphLLlslpTllGcllVuh...DK-Ehss-lLcsaVcQlLLcp+hYPEplcpLucll.s-WKGpKhVGILcop-hEsRhuhREpLSslAlslVNlGE+DLYlhuTNsLsltpcsKlSlSsPsEDhcEAlRQALLlDRYVstpGohsY-+LPtYc.uLNl+IDEcDl.hIpp+LhosDLcKhuc+hs....psl-EsF.....pcppclEpKYaLpF-IsVE
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