GenomeNet

Database: Pfam
Entry: FLIC_barrel
LinkDB: FLIC_barrel
Original site: FLIC_barrel 
#=GF ID   FLIC_barrel
#=GF AC   PF21504.1
#=GF DE   Flagellin, barrel domain
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF AU   Chuguransky S;0000-0002-0520-0736
#=GF SE   ECOD:EF15960
#=GF GA   27.00 27.00;
#=GF TC   27.70 74.60;
#=GF NC   26.20 20.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RC   Paper describing PDB structure 3a5x
#=GF RN   [1]
#=GF RM   20228803
#=GF RT   Conformational change of flagellin for polymorphic supercoiling
#=GF RT   of the flagellar  filament.
#=GF RA   Maki-Yonekura S, Yonekura K, Namba K;
#=GF RL   Nat Struct Mol Biol. 2010;17:417-422.
#=GF RC   Paper describing PDB structure 6jy0
#=GF RN   [2]
#=GF RM   32041169
#=GF RT   Structural and Functional Comparison of Salmonella Flagellar
#=GF RT   Filaments Composed of FljB and FliC.
#=GF RA   Yamaguchi T, Toma S, Terahara N, Miyata T, Ashihara M, Minamino
#=GF RA   T, Namba K, Kato T;
#=GF RL   Biomolecules. 2020; [Epub ahead of print]
#=GF RC   Paper describing PDB structure 6rgv
#=GF RN   [3]
#=GF RM   32332720
#=GF RT   Methylation of Salmonella Typhimurium flagella promotes
#=GF RT   bacterial adhesion and host cell invasion.
#=GF RA   Horstmann JA, Lunelli M, Cazzola H, Heidemann J, Kuhne C,
#=GF RA   Steffen P, Szefs S, Rossi C, Lokareddy RK, Wang C, Lemaire L,
#=GF RA   Hughes KT, Uetrecht C, Schluter H, Grassl GA, Stradal TEB,
#=GF RA   Rossez Y, Kolbe M, Erhardt M;
#=GF RL   Nat Commun. 2020;11:2013.
#=GF RN   [4]
#=GF RM   11268201
#=GF RT   Structure of the bacterial flagellar protofilament and
#=GF RT   implications for a switch for supercoiling. 
#=GF RA   Samatey FA, Imada K, Nagashima S, Vonderviszt F, Kumasaka T,
#=GF RA   Yamamoto M, Namba K; 
#=GF RL   Nature. 2001;410:331-337.
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This entry represents a barrel domain of flagellins FliC and
#=GF CC   FljB, which have a boomerang-shape with one arm composed of
#=GF CC   domain D1 and the other formed by D2 and D3 [1-3]. This entry
#=GF CC   corresponds to  to subdomain D2b described in [4].
#=GF SQ   8
#=GS A0A4Z0QF90_SALET/212-255  AC A0A4Z0QF90.1
#=GS FLIC_ECOLI/343-387        AC P04949.2
#=GS A0A4Z0KQY1_SALET/205-248  AC A0A4Z0KQY1.1
#=GS A0A3S4EK26_SALBN/41-84    AC A0A3S4EK26.1
#=GS FLIC_SALTY/347-390        AC P06179.4
#=GS A0A0J5L8F5_PLUGE/348-394  AC A0A0J5L8F5.1
#=GS FLJB_SALTY/358-401        AC P52616.2
#=GS A0A656YFP7_SALNE/24-67    AC A0A656YFP7.1
A0A4Z0QF90_SALET/212-255             TTSYTAADGT.TKT.AANQLGGVDGKTEVV..TIDGKTYNASKAAGHD
FLIC_ECOLI/343-387                   TITYTDSSGAaSSP.TAVKLGGDDGKTEVV..DIDGKTYDSADLNGGN
A0A4Z0KQY1_SALET/205-248             TTSYTDKDGN.TKS.ALNQLGGVDGKTEVV..TIDGKTYNASKAAGHD
A0A3S4EK26_SALBN/41-84               TTSYTDKDGN.TKS.ALNQLGGVDGKTEVV..TIDGKTYNASKAEGHN
FLIC_SALTY/347-390                   TTKYTADDGT.SKT.ALNKLGGADGKTEVV..SIGGKTYAASKAEGHN
A0A0J5L8F5_PLUGE/348-394             TENYTDASGK.SVTnAAVKFGGDDGKTEVVvdADSGKSYKAAELAGQD
FLJB_SALTY/358-401                   TTSYTAADGT.TKT.AANQLGGVDGKTEVV..TIDGKTYNASKAAGHD
A0A656YFP7_SALNE/24-67               VTTYTDSTGA.TKT.AANQLGGVDGKTEVV..TIDGKTYNASKAAGHD
#=GC seq_cons                        TToYTDuDGs.TKT.AANQLGGVDGKTEVV..TIDGKTYNASKAAGHD
//
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