#=GF ID   GBV-C_env
#=GF AC   PF12786.11
#=GF DE   GB virus C genotype envelope
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   Pfam-B_19 (release 24.0)
#=GF GA   21.00 21.00;
#=GF TC   21.20 21.00;
#=GF NC   20.10 20.90;
#=GF BM   hmmbuild  --aminoHMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   16791024
#=GF RT   GB virus C genotype 1 is rarely transmitted vertically but
#=GF RT   acquired during infancy in West Africa.
#=GF RA   Li C, Danso K, Addo-Yobo E, Dompreh A, Sarkodie F, Owusu-Ofori
#=GF RA   S, Allain JP;
#=GF RL   AIDS. 2006;20:1458-1460.
#=GF DR   INTERPRO; IPR024347;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This the envelope protein from the ssRNA GB virus genotype C.
#=GF SQ   3
#=GS A0A674N124_TAKRU/136-196  AC A0A674N124.1
#=GS O41892_PEGIA/120-518      AC O41892.1
#=GS M3A8L7_PSEFD/16-162       AC M3A8L7.1
A0A674N124_TAKRU/136-196             ....................kyyadgedayamk-------------------------------------------------------------------------------------------------------RDLSNPLNVTCFCVCPTAKKTWNTCICRGLLWQSPSGSGDQE-----------------------------------------------------------.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------reserd.....................
O41892_PEGIA/120-518                 .................................RVGRMPALNCSLRCNFDYSYPGISV-----DFDWAFTTLIHLPGKLWRGFTNASMLAVLVIIMLVLEQRLLMAFLLLLVVGEAQGGIFDNCHCAYWGGRPPPRLDINYRGNGTVVCECDFGKMHWAPKLCSGLLWRDGAREGTVWTLPRVCPREVLGTVSAVCQWGSAYWVWRFGDWVPLYDELPRSALCTFYA---GTGRYPAdVDVLNPSGPPCASCVVDQRPRKCGDCVRDCFETGGP---GFEECGVGVRVTSLLTAVLVDGGVESKVSTPVGERPKYLGQHGQGTFYGAVKKLGVNMTVSQIGGYWHALQCPC-DFTPGPLPERIPGIPVNACIT--GKAAHPFSAW-APGGFYAPVFTKCNWPTVPGVDVCNGFAFDFPGDHNGFIHVKKGRQQIFSGQRRSSPTWLL...........................
M3A8L7_PSEFD/16-162                  pavamlmlmlmlslslylaifwlpwtatqglll----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QPDAPAPT.KDQLNLDGVPCASVAILDHGKVTSSVISNGPEDADT---IFQACSISKSITSLAVAVLVDAGTITYHTTVKPRLPSHIINCI-------------------------------------------------------------------------------------------------------------------------------iepatehllhlsknlctprqafslhtp
#=GC seq_cons                        ....................hahs.ststhhhh.......................................................................................................hDls..hNsTshC.CshuKhpWssplCpGLLWpssutpGs......................................................ssu.hPs.hD.LN.sGsPCASssl.p+s+hsusslpss.Esuss...hFptCuluhplTSLhsAVLVDuGs.ohhoTshschPpalhpph...............................................................................................................................hEstp-.....................
//