#=GF ID Gag_p17
#=GF AC PF00540.22
#=GF DE gag gene protein p17 (matrix protein)
#=GF PI gag_p17;
#=GF AU Bateman A;0000-0002-6982-4660
#=GF SE SCOP
#=GF GA 20.80 10.00;
#=GF TC 21.50 10.10;
#=GF NC 20.50 9.90;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP Domain
#=GF CL CL0074
#=GF RN [1]
#=GF RM 7966331
#=GF RT Three-dimensional structure of the human immunodeficiency virus
#=GF RT type 1 matrix protein.
#=GF RA Massiah MA, Starich MR, Paschall C, Summers MF, Christensen AM,
#=GF RA Sundquist WI;
#=GF RL J Mol Biol 1994;244:198-223.
#=GF DR INTERPRO; IPR000071;
#=GF DR SCOP; 2hmx; fa;
#=GF DR HOMSTRAD; gag_p17;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC The matrix protein forms an icosahedral shell associated with
#=GF CC the inner membrane of the mature immunodeficiency virus.
#=GF SQ 68
#=GS POL_HV1BR/2-132 AC P03367.3
#=GS GAG_HV1U4/2-137 AC P24736.3
#=GS GAG_HV1ET/2-136 AC Q75001.3
#=GS GAG_HV1YF/2-134 AC O91079.3
#=GS Q87107_SIVSA/2-146 AC Q87107.1
#=GS GAG_HV1B1/2-132 AC P03347.3
#=GS POL_HV1EL/2-132 AC P04589.3
#=GS POL_HV1U4/2-137 AC P24740.3
#=GS GAG_HV1MN/2-135 AC P05888.3
#=GS C7TQ93_9HIV1/2-137 AC C7TQ93.1
#=GS GAG_SIVMB/2-139 AC Q1A268.3
#=GS GAG_HV1JR/2-132 AC P20873.3
#=GS GAG_HV1RH/2-132 AC P05890.3
#=GS GAG_HV1EL/2-132 AC P04592.3
#=GS POL_HV1YF/2-134 AC O91080.3
#=GS C7TQ99_9HIV1/2-137 AC C7TQ99.1
#=GS Q9Q6W4_9HIV1/2-132 AC Q9Q6W4.1
#=GS POL_HV1B1/2-132 AC P03366.3
#=GS POL_HV1RH/2-132 AC P05959.3
#=GS POL_SIVEK/2-135 AC Q1A249.3
#=GS POL_SIVCZ/45-81 AC P17283.2
#=GS POL_HV192/2-134 AC O12158.2
#=GS POL_HV193/2-134 AC O89290.3
#=GS POL_HV1VI/2-134 AC Q9QSR3.3
#=GS POL_HV1MN/2-135 AC P05961.3
#=GS GAG_SIVCZ/2-140 AC P17282.1
#=GS POL_HV1ET/2-135 AC Q75002.3
#=GS GAG_HV1H2/2-132 AC P04591.3
#=GS POL_HV1H2/2-132 AC P04585.4
#=GS A0A4Y7LBT4_PAPSO/26-175 AC A0A4Y7LBT4.1
#=GS GAG_SIVSP/2-144 AC P19504.1
#=GS Q9YX54_9HIV1/2-132 AC Q9YX54.1
#=GS A0A8V0XAC0_CHICK/135-206 AC A0A8V0XAC0.1
#=GS GAG_HV2BE/2-140 AC P18095.3
#=GS A0A1B4WRK1_SIV/2-141 AC A0A1B4WRK1.1
#=GS POL_HV1JR/2-132 AC P20875.3
#=GS B7UES0_SIV/2-124 AC B7UES0.1
#=GS Q88015_9PLVG/2-144 AC Q88015.1
#=GS A0A8V0X7Q2_CHICK/135-209 AC A0A8V0X7Q2.1
#=GS GAG_HV2RO/2-144 AC P04590.3
#=GS POL_HV2RO/2-144 AC P04584.3
#=GS W8EEZ4_9PLVG/2-132 AC W8EEZ4.1
#=GS GAG_HV1AN/2-140 AC Q77372.3
#=GS GAG_SIVTN/2-142 AC Q8AII2.3
#=GS Q5QGH1_SIV/2-144 AC Q5QGH1.1
#=GS POL_SIVMB/2-138 AC Q1A267.4
#=GS GAG_HV193/2-134 AC O89291.3
#=GS POL_HV1AN/2-140 AC Q77373.3
#=GS GAG_HV192/2-135 AC O12157.3
#=GS C7TQ81_9HIV1/2-138 AC C7TQ81.1
#=GS GAG_HV1VI/2-134 AC Q9QSR4.3
#=GS POL_HV2EH/2-139 AC Q89928.3
#=GS GAG_HV2KR/2-144 AC Q74119.3
#=GS GAG_HV1BR/2-132 AC P03348.3
#=GS B3CKG7_SIV/5-126 AC B3CKG7.1
#=GS POL_HV2BE/2-139 AC P18096.4
#=GS GAG_SIVEK/2-135 AC Q1A250.3
#=GS GAG_HV2EH/2-139 AC Q74230.3
#=GS C7TQ75_9HIV1/2-138 AC C7TQ75.1
#=GS POL_SIVCZ/2-47 AC P17283.2
#=GS A0A163J913_ABSGL/791-892 AC A0A163J913.1
#=GS GAG_HV1MA/2-138 AC P04594.3
#=GS POL_HV1MA/2-138 AC P04588.3
#=GS POL_SIVTN/2-142 AC Q8AII1.4
#=GS POL_HV2KR/2-144 AC Q74120.3
#=GS POL_SIVSP/2-144 AC P19505.2
#=GS C7TQ87_9HIV1/2-141 AC C7TQ87.1
#=GS P89903_SIVTA/2-141 AC P89903.1
POL_HV1BR/2-132 ...............GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATL.YCV.H.QRI..EIKDTKEALDKIEEEQNKSKKK.-------...AQQAA...AD-.....-TGHSSQVSQNY..................................................
GAG_HV1U4/2-137 ...............GARASVLSGKKLDSWEKIRLRPGGNKKYRLKHLVWASRELEKFTLNPGLLETAEGCQQILGQLQPALQTGTEELRSLYNTVAVL.YCV.H.QRI..DVKDTKEALNKIEEMQNKNKQR.TQQ----...---AA...ANT.....GSSQ--------nypivqnaqgq.......................................
GAG_HV1ET/2-136 ...............GARASILRGEKLDAWEKIKLRPGGKKHYMLKHLVWANRELEKFALNPDLLDTSAGCKQIIKQLQPALQTGTEELKSLFNTVATL.YCV.H.QKI..EIKDTKEALDKIEEEQNESQQK.TQQAGAA...DRGKD...SQ-.....------------nypivqnm..........................................
GAG_HV1YF/2-134 ...............GARASVLTGGKLDQWESIYLRPGGKKKYRMKHLVWASRELERFACNPGLMDTADGCAKLLNQLEPALKTGSEELRSLYNALAVL.YCV.H.SRI..QIHNTQEALDKIKEKQEQHKPE.----PKN...PEAGA...---.....AAATDSNISRNY..................................................
Q87107_SIVSA/2-146 ...............GASNSVLSGRKLDAFESVRLRPNGKKKYKLRHLVWASKELDRFSLSANLLETKEGVVKILSVLLPLVPTGSENLIALFNLCCVL.ACI.H.AEI..KVKDTEEAKAKVKEEVPAEMTE.SATATSS...GQTKE...LQAkkknePTVTPSGGSRNY..................................................
GAG_HV1B1/2-132 ...............GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATL.YCV.H.QRI..EIKDTKEALDKIEEEQNKSKKK.-------...AQQAA...AD-.....-TGHSSQVSQNY..................................................
POL_HV1EL/2-132 ...............GARASVLSGGKLDKWEKIRLRPGGKKKYRLKHIVWASRELERYALNPGLLETSEGCKQIIGQLQPAIQTGTEELRSLYNTVATL.YCV.H.KGI..DVKDTKEALEKMEEEQNKSKKK.-------...AQQAA...AD-.....-TGNNSQVSQNY..................................................
POL_HV1U4/2-137 ...............GARASVLSGKKLDSWEKIRLRPGGNKKYRLKHLVWASRELEKFTLNPGLLETAEGCQQILGQLQPALQTGTEELRSLYNTVAVL.YCV.H.QRI..DVKDTKEALNKIEEMQNKNKQR.TQQ----...---AA...ANT.....GSSQ--------nypivqnaqgq.......................................
GAG_HV1MN/2-135 ...............GARASVLSGGELDRWEKIRLRPGGKKKYKLKHVVWASRELERFAINPGLLETSEGCRQILGQLQPSLQTGSEERKSLYNTVATL.YCV.H.QKI..KIKDTKEALEKIEEEQNKSKKK.------A...QQAAA...DTG.....NRGNSSQVSQNY..................................................
C7TQ93_9HIV1/2-137 ...............GARASILSGGQLDRWEKIRLRPGGKKKYRLKHLVWASRELEKFSINPGLLETAEGCQQILEQLQPAVKTGSEELKSLFNTVAVL.YCV.H.QRI..NVKDTKEALDKVEEMQNKKAQQ.AADNTGS...SSK--...---.....------------vsqnypivqnaqg.....................................
GAG_SIVMB/2-139 ...............GARASVLTGGKLDRWEKIYLRPGGKKKYMMKHLVWASRELERFACNPSLMETTEGCKQLLQQLEPALKTGSEGLRSLFNTIVVL.WCV.H.QGI..PVKDTKEALDQLQEAQQKGKQE.VAAATAD...G----...---.....------------tstvsrnfpivanaqgq.................................
GAG_HV1JR/2-132 ...............GARASVLSGGELDRWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPSLKTGSEELTSLYNTVATL.YCV.H.QRI..EIKDTKEALEKIEEEQTKSMKK.-------...AQQAA...AD-.....-TGNSSQVSQNY..................................................
GAG_HV1RH/2-132 ...............GARASVLSGGKLDKWEKIRLRPRGKKRYKLKHIVWASRELERFAVNPSLLETAEGCRQILGQLQPALQTGSEELKSLYNAVATL.YCV.H.QNI..EVRDTKEALDKIEEEQNKSKKK.-------...AQQAA...AD-.....-TGNGSQVSQNY..................................................
GAG_HV1EL/2-132 ...............GARASVLSGGKLDKWEKIRLRPGGKKKYRLKHIVWASRELERYALNPGLLETSEGCKQIIGQLQPAIQTGTEELRSLYNTVATL.YCV.H.KGI..DVKDTKEALEKMEEEQNKSKKK.-------...AQQAA...AD-.....-TGNNSQVSQNY..................................................
POL_HV1YF/2-134 ...............GARASVLTGGKLDQWESIYLRPGGKKKYRMKHLVWASRELERFACNPGLMDTADGCAKLLNQLEPALKTGSEELRSLYNALAVL.YCV.H.SRI..QIHNTQEALDKIKEKQEQHKPE.----PKN...PEAGA...---.....AAATDSNISRNY..................................................
C7TQ99_9HIV1/2-137 ...............GARVSVLSGGKLDAWEKIRLRPGGKKQYRIKHLVWASRELERFALNPGLLETAEGCQQILIQLQPAIQTGTEEIKSLFNTIATL.YCV.H.QRI..EVKDTKEALDKIEEIQNKKKQQ.AAADPGN...SSK--...---.....------------vsqnypivqnaqg.....................................
Q9Q6W4_9HIV1/2-132 ...............GARASVLSGGKLDAWEKIRLRPGGKEKYRIKHLVWASRELERFALNPSLLETSEGCQQILEQLQPTLKTGSEELKSLYNTVATL.YCV.H.QRI..EIKDTKEALDKIEEIQNKSKQK.-------...-TQQA...AT-.....GTGSSSKVSQNY..................................................
POL_HV1B1/2-132 ...............GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATL.YCV.H.QRI..EIKDTKEALDKIEEEQNKSKKK.-------...AQQAA...AD-.....-TGHSSQVSQNY..................................................
POL_HV1RH/2-132 ...............GARASVLSGGKLDKWEKIRLRPRGKKRYKLKHIVWASRELERFAVNPSLLETAEGCRQILGQLQPALQTGSEELKSLYNAVATL.YCV.H.QNI..EVRDTKEALDKIEEEQNKSKKK.-------...AQQAA...AD-.....-TGNGSQVSQNY..................................................
POL_SIVEK/2-135 ...............GARASVLTGGKLDQWEKIYLRPGGKKKYMMKHLVWASRELERFACNPGLMDTAEGCAQLLRQLEPALKTGSEGLRSLFNTLAVL.YCV.H.NNI..KVQNTQEALEKLREKMKAEQKE.-----PE...PEQAA...GAA.....-AAPESSISRNY..................................................
POL_SIVCZ/45-81 ..............a------------------------------------------------------------------------------------.---.-.---..------------KRHHGEQQSK.TESNSGS...REGGA...SQG.....-ASASAGISGNY..................................................
POL_HV192/2-134 ...............GARASILRGGKLDAWERIKLKPGGKKHYMMKHLVWASRELERFALDPGLLETSEGCKQIMKQLQPALQTGTKELISLHNTVATL.YCV.H.EKI..DVRDTKEALDKIKEEQNKSQQK.TQQAEAA...DKGKV...SQ-.....------------nypivq............................................
POL_HV193/2-134 ...............GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALDPGLLETSEGCRKIIGQLQPSLQTGSEELKSLYNTIAVL.YYV.H.QKV..EVKDTKEALEKLEEEQNKGRQK.TQQATAE...-----...---.....------------kgvsqnypivqnl.....................................
POL_HV1VI/2-134 ...............GARASILSGGKLDEWEKIQLRPGGKKRYKMKHLIWASRELERFALDPGLLETSEGCQKIIRQLQPSLQTGSEELKSLFNTVAVL.YYV.H.QRA..GVTDTKEALDKLEEEQNKSQQK.TQQAAA-...-----...-DK.....------------gvsqnypivqnl......................................
POL_HV1MN/2-135 ...............GARASVLSGGELDRWENIRLRPGGKKKYKLKHVVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLYNTVATL.YCV.H.QKI..EIKDTKEALEKIEEEQNKSKKK.------A...QQAAA...DTG.....NRGNSSQVSQNY..................................................
GAG_SIVCZ/2-140 ...............GARASVLTGGKLDRWEKVRLRPGGRKRYMMKHLVWASRELERFACDPGLMESKEGCTKLLQQLEPALKTGSEGLRSLFNTLAVL.WCI.H.SDI..TVEDTQKALEQLKRHHGEQQSK.TESNSGS...REGGA...SQG.....-ASASAGISGNY..................................................
POL_HV1ET/2-135 ...............GARASILRGEKLDAWEKIKLRPGGKKHYMLKHLVWANRELEKFALNPDLLDTSAGCKQIIKQLQPALQTGTEELKSLFNTVATL.YCV.H.QKI..EIKDTKEALDKIEEEQNESQQK.TQQAGAA...DRGKD...SQ-.....------------nypivqn...........................................
GAG_HV1H2/2-132 ...............GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATL.YCV.H.QRI..EIKDTKEALDKIEEEQNKSKKK.-------...AQQAA...AD-.....-TGHSNQVSQNY..................................................
POL_HV1H2/2-132 ...............GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATL.YCV.H.QRI..EIKDTKEALDKIEEEQNKSKKK.-------...AQQAA...AD-.....-TGHSNQVSQNY..................................................
A0A4Y7LBT4_PAPSO/26-175 ..peiqqkvydatsy--------------------EPWGSHGSDLTEIAQATKKLEHLALFPLLIGTSTDCKIIMNVLWTGLADGGSNWRNVYKALAVMeYLVaHgSDT..AVYDIINHSFQIS---------.-------...-----...---.....------------keadtilsllddkdkiqevrdkaaadrdnaiaggnqgikakdvavhngsd
GAG_SIVSP/2-144 ...............GARNSVLSGKKADELEKIRLRPGGKKRYQLKHIVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVL.WCI.H.AEE..KVKHTEEAKQIVQRHLVVETGT.ADKMPAT...SRPTA...P--.....------------psgkggnypvqqiggny.................................
Q9YX54_9HIV1/2-132 ...............GARASVLSGGKLDAWERIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETAEGCQQLMEQLQSTLKTGSEELRSLYNTITTL.WCV.H.QRI..DVQDTKEALDKIEEIQSKSKQK.-------...TQQAA...AAA.....--GGSSNVSQNY..................................................
A0A8V0XAC0_CHICK/135-206 ...slscvdalvvse------------------------------------------------------------------VATGSEGLPTLWALVGSL.PCV.D.ALVadEVGTASEALPTLKTLK------.-------...-----...---.....------------avlscvdavmdnqgrta.................................
GAG_HV2BE/2-140 ...............GARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILRVLDPLVPTGSENLKSLFNTVCVI.WCL.H.AEE..KVKDTEEAKKLAQRHLVAETGT.AEKMP--...-----...---.....------------ntsrptappsgkrgnypvqqa.............................
A0A1B4WRK1_SIV/2-141 ...............GAGTSALSGRKLDEFEKIRLRPNGKKKYRLKHIIWAGKEMERFGLHEKLLETEEGCKRIIEVLLPLEPTGSEGLKSLFNLVCVL.YCI.H.REQ..KVKDTEEAVVTVKQHCHLEEKQkSAAAPPG...GEKKN...YNS.....-RETSGGQSQNY..................................................
POL_HV1JR/2-132 ...............GARASVLSGGELDRWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPSLKTGSEELTSLYNTVATL.YCV.H.QRI..EIKDTKEALEKIEEEQTKSMKK.-------...AQQAA...AD-.....-TGNSSQVSQNY..................................................
B7UES0_SIV/2-124 ...........ggte----SKIDPELLKKLERVRLRETGKKCYRRAHVKWAVQELKHLCIDPDDLGTKEGCKRIVEKLLPLEEGGTQKLKSLLNICIVI.LCL.Q.EGL..PVRNTIEAKKRVKVKEKKEEQ-.-------...-----...---.....------------lampiirnaqg.......................................
Q88015_9PLVG/2-144 ...............GVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVI.WCI.H.AEE..KVKHTEEAKQIVQRHLVVETGT.TETMPKT...SRPTA...PSS.....GRGG--------nypvqqiggny.......................................
A0A8V0X7Q2_CHICK/135-209 ...slscvdalvvse------------------------------------------------------------------VATGSEGLPTLWALVGSL.PCV.D.ALVadEVGTASEALPTLKTLK------.-------...-----...---.....------------avlscvdavmdnqgrtafea..............................
GAG_HV2RO/2-144 ...............GARNSVLRGKKADELERIRLRPGGKKKYRLKHIVWAANKLDRFGLAESLLESKEGCQKILTVLDPMVPTGSENLKSLFNTVCVI.WCI.H.AEE..KVKDTEGAKQIVRRHLVAETGT.AEKMPSTsrpTAPSS...EKG.....GN----------ypvqhvggny........................................
POL_HV2RO/2-144 ...............GARNSVLRGKKADELERIRLRPGGKKKYRLKHIVWAANKLDRFGLAESLLESKEGCQKILTVLDPMVPTGSENLKSLFNTVCVI.WCI.H.AEE..KVKDTEGAKQIVRRHLVAETGT.AEKMPSTsrpTAPSS...EKG.....GN----------ypvqhvggny........................................
W8EEZ4_9PLVG/2-132 ...............GARASILSGGELDRWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETTEGCRQIIKQLQPSLQTGSEELKSLFNTVATL.YCV.H.QKI..DIKDTKEALDRIEEEQNKSKKK.-------...AQQTA...AD-.....-TGNNSQVSQNY..................................................
GAG_HV1AN/2-140 ...............GASASVLTGSKLDAWEQIRLKPGSKKKYRLKHLVWASRELERFACNPELLETAEGNEKLLQQLEPALKTGSDSLQSLWNAIVVL.WCV.H.NRY..KIGDTQQAIQKLKEVMGSRKSAdAAKEDTS...ARQAG...---.....------------qnypivsnaqgqm.....................................
GAG_SIVTN/2-142 ...............GARASVLRGDKLDTWESIRLKSRGRKKYLIKHLVWAGSELQRFAMNPGLMENVEGCWKIILQLQPSVDIGSPEIISLFNTICVL.YCV.H.AGE..RVQDTEEAVKIVKMKLTVQKNNsTATSSGQ...RQNAG...EKE.....ETVPPSGNT---gnt...............................................
Q5QGH1_SIV/2-144 ...............GVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVI.WCI.H.AEE..KVKHTEEAKQIVQRHLVVETGT.TETMPKT...SRPTA...PSS.....GRGG--------nypvqqiggny.......................................
POL_SIVMB/2-138 ...............GARASVLTGGKLDRWEKIYLRPGGKKKYMMKHLVWASRELERFACNPSLMETTEGCKQLLQQLEPALKTGSEGLRSLFNTIVVL.WCV.H.QGI..PVKDTKEALDQLQEAQQKGKQE.VAAATAD...G----...---.....------------tstvsrnfpivanaqg..................................
GAG_HV193/2-134 ...............GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALDPGLLETSEGCRKIIGQLQPSLQTGSEELKSLYNTIAVL.YYV.H.QKV..EVKDTKEALEKLEEEQNKGRQK.TQQATAE...-----...---.....------------kgvsqnypivqnl.....................................
POL_HV1AN/2-140 ...............GASASVLTGSKLDAWEQIRLKPGSKKKYRLKHLVWASRELERFACNPELLETAEGNEKLLQQLEPALKTGSDSLQSLWNAIVVL.WCV.H.NRY..KIGDTQQAIQKLKEVMGSRKSAdAAKEDTS...ARQAG...---.....------------qnypivsnaqgqm.....................................
GAG_HV192/2-135 ...............GARASILRGGKLDAWERIKLKPGGKKHYMMKHLVWASRELERFALDPGLLETSEGCKQIMKQLQPALQTGTKELISLHNTVATL.YCV.H.EKI..DVRDTKEALDKIKEEQNKSQQK.TQQAEAA...DKGKV...SQ-.....------------nypivqn...........................................
C7TQ81_9HIV1/2-138 ...............GARASVLSGGKLDAWEKIKLRPGGKKKYKMKHLVWASRELERFALNPDLLETSEGCLQILAQIQPAIKTGTEELKSLYNAVAVL.CCV.H.QKI..NVKDTKEALDEIEKIQNKKTQQ.AAADTGN...NNQVS...---.....------------rnypivqnaqgq......................................
GAG_HV1VI/2-134 ...............GARASILSGGKLDEWEKIQLRPGGKKRYKMKHLIWASRELERFALDPGLLETSEGCQKIIRQLQPSLQTGSEELKSLFNTVAVL.YYV.H.QRA..GVTDTKEALDKLEEEQNKSQQK.TQQAAA-...-----...-DK.....------------gvsqnypivqnl......................................
POL_HV2EH/2-139 ...............GARGSVLSGKKTDELEKVRLRPGGKKRYMLKHIVWAVNELERFGLAESRLGSKEGCRKIRKVLGPLVPTGSENLKSLYNTVCVI.FCL.H.AEE..KVKDTEEAKKIAQRHLAADTEKmPAMSKP-...-----...---.....------------skptsrlaypvqqiagny................................
GAG_HV2KR/2-144 ...............GARSSVLRGKKVDELEKIRLRPGGKKKYRLKHIVWAANELGKFGLAESLLESKEGCQKIITVLDPLVPTGSENLKSLFNTVCVI.WCL.H.AEE..KVKDTEGAKQIVQRHLVAETGT.ADKMPST...SRPAAppsGRG.....GNYPVQQIAGNY..................................................
GAG_HV1BR/2-132 ...............GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATL.YCV.H.QRI..EIKDTKEALDKIEEEQNKSKKK.-------...AQQAA...AD-.....-TGHSSQVSQNY..................................................
B3CKG7_SIV/5-126 ....nsislapeice-------------SLQRVRLRKDSKKTYKRKHLVWLVKELEKLCLDGKLISSQEGVKKLCEHIAPLVPEGSKTIRSIWGMISVL.ACL.Y.NNI..QVSDTQAAIKKIEVRPREEKA-.-------...-----...---.....------------svnmpvlrgpqg......................................
POL_HV2BE/2-139 ...............GARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILRVLDPLVPTGSENLKSLFNTVCVI.WCL.H.AEE..KVKDTEEAKKLAQRHLVAETGT.AEKMP--...-----...---.....------------ntsrptappsgkrgnypvqq..............................
GAG_SIVEK/2-135 ...............GARASVLTGGKLDQWEKIYLRPGGKKKYMMKHLVWASRELERFACNPGLMDTAEGCAQLLRQLEPALKTGSEGLRSLFNTLAVL.YCV.H.NNI..KVQNTQEALEKLREKMKAEQKE.-----PE...PEQAA...GAA.....-AAPESSISRNY..................................................
GAG_HV2EH/2-139 ...............GARGSVLSGKKTDELEKVRLRPGGKKRYMLKHIVWAVNELERFGLAESRLGSKEGCRKIRKVLGPLVPTGSENLKSLYNTVCVI.FCL.H.AEE..KVKDTEEAKKIAQRHLAADTEKmPAMSKP-...-----...---.....------------skptsrlaypvqqiagny................................
C7TQ75_9HIV1/2-138 ...............GARASVLTGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETSEGCQQIMKQLQPAIKTGTEELRSLYNTVATL.YCV.H.QQI..KVDDTKEALDKVEEIQNKKTEQ.AAADTGS...SRS--...---.....------------vsqnypivqnaqgq....................................
POL_SIVCZ/2-47 ...............GARASVLTGGKLDRWEKVRLRPGGRKRYMMKHLVWASRELERFA----------------------------------------.---.-.---..----------------------.-------...-----...---.....------------kr................................................
A0A163J913_ABSGL/791-892 ldayaccayvvdyin--------------------------------------------------KADKGISDLLDRAYHDFQTGNEGLKSLFSKLSSL.YYN.H.SEV..SAQETAYNLLWIPMVESSSQSM.YVNTSPP...AERT-...---.....------------hilktaaelgald.....................................
GAG_HV1MA/2-138 ...............GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETGEGCQQIMEQLQSTLKTGSEEIKSLYNTVATL.YCV.H.QRI..DVKDTKEALDKIEEIQNKSRQK.TQQAAAA...-QQA-...AAA.....-TKNSSSVSQNY..................................................
POL_HV1MA/2-138 ...............GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETGEGCQQIMEQLQSTLKTGSEEIKSLYNTVATL.YCV.H.QRI..DVKDTKEALDKIEEIQNKSRQK.TQQAAAA...-QQA-...AAA.....-TKNSSSVSQNY..................................................
POL_SIVTN/2-142 ...............GARASVLRGDKLDTWESIRLKSRGRKKYLIKHLVWAGSELQRFAMNPGLMENVEGCWKIILQLQPSVDIGSPEIISLFNTICVL.YCV.H.AGE..RVQDTEEAVKIVKMKLTVQKNNsTATSSGQ...RQNAG...EKE.....ETVPPSGNT---gnt...............................................
POL_HV2KR/2-144 ...............GARSSVLRGKKVDELEKIRLRPGGKKKYRLKHIVWAANELGKFGLAESLLESKEGCQKIITVLDPLVPTGSENLKSLFNTVCVI.WCL.H.AEE..KVKDTEGAKQIVQRHLVAETGT.ADKMPST...SRPAAppsGRG.....GNYPVQQIAGNY..................................................
POL_SIVSP/2-144 ...............GARNSVLSGKKADELEKIRLRPGGKKRYQLKHIVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVL.WCI.H.AEE..KVKHTEEAKQIVQRHLVVETGT.ADKMPAT...SRPTA...P--.....------------psgkggnypvqqiggny.................................
C7TQ87_9HIV1/2-141 ...............GARASVLSGGKLDSWEKIRLRPGGKKQYRMKHLVWASRELDRFALNPSLLETAEGCQQIIGQLQPAIKTGTEELKSLYNTVATL.YCV.H.QRI..DVKDTKEALDKIEELQNKRTQQaTAATGSS...SQN--...---.....------------ypivqnaqgqmvhqai..................................
P89903_SIVTA/2-141 ...............GAGHSALSGRNLDTFEKIRLRPNGKKKYQLKHLIWAGKKMERFGLHEKLLETKEGCQKIIEVLSPLEPTGSEGLKSLFNLCCVI.WCI.H.AEQ..KVKDTEEAVVLVKQRCHLVEKEkTAAAPSG...GQQQN...YNT.....-AATPSGRHGNY..................................................
#=GC seq_cons ...............GARASVLoGsKLDpWEKIRLRPGGKKKY+LKHlVWASRELERFAlsPuLLETsEGCppIlpQLpPulpTGSEpL+SLaNTVusL.YCV.H.pcl..cVKDTcEALc+lcEcpsppppc...........sptts....t....................................................................
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