#=GF ID   Gag_p19
#=GF AC   PF02228.20
#=GF DE   Major core protein p19
#=GF PI   gag_p19; 
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF AU   Mian N;0000-0003-4284-4749
#=GF SE   Pfam-B_1307 (release 5.2)
#=GF GA   22.00 22.00;
#=GF TC   24.30 22.60;
#=GF NC   21.30 18.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0074
#=GF RN   [1]
#=GF RM   6304725
#=GF RT   Human adult T-cell leukemia virus: complete nucleotide sequence
#=GF RT   of the provirus genome integrated in leukemia cell DNA. 
#=GF RA   Seiki M, Hattori S, Hirayama Y, Yoshida M; 
#=GF RL   Proc Natl Acad Sci U S A 1983;80:3618-3622.
#=GF DR   INTERPRO; IPR003139;
#=GF DR   SCOP; 1jvr; fa;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   p19 is a component of the inner protein layer of the viral 
#=GF CC   nucleocapsid.
#=GF SQ   23
#=GS Q85490_BLV/2-79    AC Q85490.1
#=GS O09241_9DELA/1-92  AC O09241.1
#=GS POL_HTL1C/1-92     AC P14078.3
#=GS Q9WJP3_BLV/2-78    AC Q9WJP3.2
#=GS Q9QRA1_9DELA/1-92  AC Q9QRA1.1
#=GS GAG_HTLV2/1-92     AC P03346.3
#=GS PRO_HTLV2/1-92     AC P03353.3
#=GS Q9QR99_9DELA/1-92  AC Q9QR99.1
#=GS POL_HTLV2/1-92     AC P03363.4
#=GS O92812_BLV/2-73    AC O92812.2
#=GS POL_HTL1A/1-92     AC P03362.3
#=GS Q8URT3_9DELA/1-92  AC Q8URT3.1
#=GS GAG_HTL1A/1-92     AC P03345.3
#=GS POL_HTL32/1-92     AC Q0R5R2.3
#=GS B8LHL8_9DELA/1-90  AC B8LHL8.1
#=GS W5UB23_SIV/1-90    AC W5UB23.1
#=GS Q6XQ06_9DELA/1-92  AC Q6XQ06.1
#=GS GAG_HTL1C/1-92     AC P14076.3
#=GS PRO_HTL32/1-92     AC Q0R5R3.3
#=GS Q9QRA0_9DELA/1-92  AC Q9QRA0.1
#=GS PRO_HTL1A/1-92     AC P10274.3
#=GS GAG_HTL32/1-92     AC Q0R5R4.3
#=GS PRO_HTL1C/1-92     AC P14074.3
Q85490_BLV/2-79               gn---------SPSYNPPAGISPSDWLNLRQSAQRLNPRPSPSDFTDLKNYIHWFHKT------------------------------------qkkpwtftsggpascppgkfgrvplvlat
O09241_9DELA/1-92             ..MGQTYGLSPSPIPKAPRGLSTHHWLNFLQASYRLQPGPSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRTSEIINVLIRNQA.............................
POL_HTL1C/1-92                ..MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQA.............................
Q9WJP3_BLV/2-78               gn---------SPSYNPPAGISPSDWLNLRQSAQRLNPRPSPSDFTDLKNYIHWFHKT------------------------------------qkkpwtftsggpascppgkfgrvplvla.
Q9QRA1_9DELA/1-92             ..MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQA.............................
GAG_HTLV2/1-92                ..MGQIHGLSPTPIPKAPRGLSTHHWLNFLQAAYRLQPRPSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRVVEIINILVKNQ-v............................
PRO_HTLV2/1-92                ..MGQIHGLSPTPIPKAPRGLSTHHWLNFLQAAYRLQPRPSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRVVEIINILVKNQ-v............................
Q9QR99_9DELA/1-92             ..MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQA.............................
POL_HTLV2/1-92                ..MGQIHGLSPTPIPKAPRGLSTHHWLNFLQAAYRLQPRPSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRVVEIINILVKNQ-v............................
O92812_BLV/2-73               gn---------SPSYNPPAGISPSDWLNLRQSAQRLNPRPSPSDFTDLKNYIHWFHKT------------------------------------qkkpwtftsggpascppgkfgrv......
POL_HTL1A/1-92                ..MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPARICPINYSLLASLLPKGYPGRVNEILHILIQTQA.............................
Q8URT3_9DELA/1-92             ..MGKTYSSPVNPIPKAPKGLAIHHWLNFLQAAYRLQPGPSEFDFHQLRKFLKLAIKTPVWLNPINYSVLAGLIPKNYPGRVHEIVAILIQETP.............................
GAG_HTL1A/1-92                ..MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPARICPINYSLLASLLPKGYPGRVNEILHILIQTQA.............................
POL_HTL32/1-92                ..MGKTYSSPINPIPKAPKGLAIHHWLNFLQAAYRLQPGPSEFDFHQLRKFLKLAIKTPVWLNPINYSVLAGLIPKNYPGRVHEIVAILIQETP.............................
B8LHL8_9DELA/1-90             ..MGQTHT--SSPVPKAPRGLSTHHWLNFLQAAYRLQPGPSEFDFHQLRRFLKLALQTPVWLNPIDYSLLAGLIPKGYPGRVTEIVNILLRA--hp...........................
W5UB23_SIV/1-90               ..MGQTHT--SSPVPKAPRGLSTHHWLNFLQAAYRLQPGPSEFDFHQLRRFLKLALQTPVWLNPIDYSLLASLIPKGYPGRVTEIVNILLRA--hp...........................
Q6XQ06_9DELA/1-92             ..MGKTFSSPANPIPKAPKGLAIHHWLNFLQAAYRLQPGPSEFDFHQLRKFLKLAIKTPVWLNPINYSVLAGLIPKNYPGRVHEIVAILIQETP.............................
GAG_HTL1C/1-92                ..MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQA.............................
PRO_HTL32/1-92                ..MGKTYSSPINPIPKAPKGLAIHHWLNFLQAAYRLQPGPSEFDFHQLRKFLKLAIKTPVWLNPINYSVLAGLIPKNYPGRVHEIVAILIQETP.............................
Q9QRA0_9DELA/1-92             ..MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQA.............................
PRO_HTL1A/1-92                ..MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPARICPINYSLLASLLPKGYPGRVNEILHILIQTQA.............................
GAG_HTL32/1-92                ..MGKTYSSPINPIPKAPKGLAIHHWLNFLQAAYRLQPGPSEFDFHQLRKFLKLAIKTPVWLNPINYSVLAGLIPKNYPGRVHEIVAILIQETP.............................
PRO_HTL1C/1-92                ..MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQA.............................
#=GC seq_cons                 ..MGQhaSpssSPIP+sPRGLAsHHWLNFLQAAYRLpPGPSsaDFHQL+KFLKlALcTPlWlsPINYSLLASLlPKGYPGRVsEIlpILIQsps.............................
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