#=GF ID   Gyro_capsid
#=GF AC   PF04162.16
#=GF DE   Gyrovirus capsid protein (VP1)
#=GF PI   Circo_coat; 
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_1772 (release 7.3)
#=GF GA   25.00 25.00;
#=GF TC   114.10 28.20;
#=GF NC   22.10 21.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR007291;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   Gyroviruses are small circular single stranded viruses. This
#=GF CC   family includes the VP1 protein from the chicken anaemia virus
#=GF CC   which is the viral capsid protein.
#=GF SQ   17
#=GS A0A482D3W7_9VIRU/1-257    AC A0A482D3W7.1
#=GS A0A482D3W7_9VIRU/253-397  AC A0A482D3W7.1
#=GS U5UAI8_9VIRU/216-353      AC U5UAI8.1
#=GS A0A077CUS9_9VIRU/1-456    AC A0A077CUS9.1
#=GS CAPSD_CAVC1/1-449         AC Q99153.1
#=GS A0A089QEX9_9VIRU/1-462    AC A0A089QEX9.1
#=GS A0A0G4ANJ1_9VIRU/1-478    AC A0A0G4ANJ1.1
#=GS B2REH4_9VIRU/1-449        AC B2REH4.1
#=GS F4ZDR2_9VIRU/1-456        AC F4ZDR2.1
#=GS U5UAI8_9VIRU/1-133        AC U5UAI8.1
#=GS U5U7Q9_9VIRU/4-453        AC U5U7Q9.1
#=GS A0A2Z4N430_9VIRU/1-454    AC A0A2Z4N430.1
#=GS I7DCG0_9VIRU/194-349      AC I7DCG0.1
#=GS U5UAI8_9VIRU/127-227      AC U5UAI8.1
#=GS I7DCG0_9VIRU/1-132        AC I7DCG0.1
#=GS I7DCG0_9VIRU/123-214      AC I7DCG0.1
#=GS A0A2U9N6R0_9VIRU/1-417    AC A0A2U9N6R0.1
A0A482D3W7_9VIRU/1-257               ............m-AR.FRRYHRRRYPHRpRYRRRGHYHR...R.....R.Y..W.Y....TT...R..HRlrR.Y...Q...RSF.R....RQF....RKAFHNPHPGSYTVRRTNPYDRQTVLFQGIIK..V.PLGT-LPKGQQSKGY--H----LVSRIDISFGNLLRAAY--TAKSKF--------MKD..S...GDW.QK...-..ET..GD.RIG.GPVVNQD....W...NQFPSFWWNWAWIKMIPSWQGRtnpiiYPIH..EAS.QKIDDtastLSHFIGFYQLYKHVKTTMAVLNTY..NgpfvdnEK.TYghlrqtS..ILASLLTQDNYIMARENTIYND----------------.....-----.----.....-.---------------....----------.....-....------------------...----------..-------------------------------------...........----------.-...----------------........----------------....----...--.---....--------------------.----------------kyaqpac........
A0A482D3W7_9VIRU/253-397             ....aqpacliek---.------------.----------...-.....-.-..-.-....--...-..--..-.-...-...---.-....---....--------------------------------..-.----------------------------------------------------------..-...---.--...-..--..--.---.-------....-...----------------------.....----..---.-----....------------------------..-......--.--......-..--------------------------------------.....-----.----.....-.---------------....----------.....-....------------LYFNFG...ELTAWGAPWA..FPPGQRGTSRGLFNHHSMTGTNDPMADPWQPLDPPPP...........RPISQNY---.P...ESTVDKVIGSLHLANF........TEFTPNYTMGTASALAaggdADTS...AKwEYC....WAVVRVKSKWMLGNL-RPYErMKVKW-----------dida...........
U5UAI8_9VIRU/216-353                 .qvgnrgatqlsq---.------------.----------...-.....-.-..-.-....--...-..--..-.-...-...---.-....---....--------------------------------..-.----------------------------------------------------------..-...---.--...-..--..--.---.-------....-...----------------------.....----..---.-----....------------------------..-......--.--......-..--------------------------------------.....-----.----.....-.---------------....----------.....-....-----------IKFPSFL...ELSAWGAQWS..FQPGLQSVSSRSFNHHSFVGTNDPMGEPWKVFCPLDN...........MTQQDTQISW.V...YA----TLFLAEFASV........TNK---QGYNTEQTSL....E-MQ...AL.SDT....WAVIKVRSEWMLGNQNRVKS.N---------------mvtfttg........
A0A077CUS9_9VIRU/1-456               .............MARlRRRRPRGRFGFY.HRGRWHWRHR...L.....R.R..RrYsrrgKF...R..YA..R.R...R...SFD.R....RVK....RRIF-NPHPGSYVVRLPNPYNKLTLFFQGIVF..I.PEAQAFVKSTYK---KTNLTVCHVASINVNLREFMLATMPLDAKSKIGGPNPYPQHLQ..GcqwSAQ.TT...Q..DA..WP.YAA.GMSETKR....P...SVPPSEWWRWALLVMHPRAPGR.....FYNA..PKL.MTLDA....MGDLLGGWQLFRHVKTKFRVLATM..G......QG.AF......S..PVASLLVQNDYWSRRHLEGFPVKGAP-PMCTMQRKTQQ.....YGNVE.SNAP.....A.DEQWLPVNPPDPPVY....PNQGGCSQNVapgiyRl.agLEESSRCFYSKACFPSFA...ALSAMGAPWS..FPSTQKPIQRGSFNKHSITGTGDPQGRRWLTLVPKGV...........EWITDDTMEP.-...-TQLDTDIATLFLAQG........SPVWAPYKFGTFHKAM....ALTA...MQ.TTP....WCVVKVRSIWQLGNQRQPYP.WQVNWYNE--------htatd..........
CAPSD_CAVC1/1-449                    .............MAR.RARRPRGRFYSF.RRGRWHHLKR...L.....R.R..R.Y....KF...R..HR..R.R...Q...RYR.R....RAF....RKAFHNPRPGTYSVRLPNPQSTMTIRFQGVIF..L.TEGLILPKNSTAGGYADHMYGARVAKISVNLKEFLLASMNLTYVSKIGGPIAGELIAD..G...SKS.QA...A..DN..WP.NCW.LPLDNNV....P...SATPSAWWRWALMMMQPTDSCR.....FFNH..PKQ.MTLQD....MGRMFGGWHLFRHIETRFQLLATK..N......EG.SF......S..PVASLLSQGEYLTRRDDVKYSSDHQNRWQKGGQPMTGG.....IAYAT.GKMR.....P.DEQQYPAMPPDPPII....TATTAQGTQV.....R....CMNSTQAWWSWDTYMSFA...TLTALGAQWS..FPPGQRSVSRRSFNHHKARGAGDPKGQRWHTLVPLGT...........ETITDSYMSA.P...ASELDTNFFTLYVAQG........TNKSQQYKFGTATYAL....KEPV...MK.SDA....WAVVRVQSVWQLGNRQRPYP.WDVNWANSTMYWGTQP...............
A0A089QEX9_9VIRU/1-462               .............MAR.RARRPRGRFYSF.YRGRWRVHRR...R.....R.RfrR.Hr.arKF...R..LR..S.A...R...RFH.-....RGI....KRRFFNPRPGSYVVRLPNPNTRMKVFFQGVIY..V.PVSRVFY-DTTNESLLGHTVTCRVSKITVSFRDFLRACLPLDAYSKLGGPIPAAQYID..G...FNK.LN...S..DC..WP.YTR.PPEKKKSsatwPpeeSASPADWWRWALLLMYPPNVNR.....YYTS..PQI.PTLES....MGEMFGGWQLFRHIKTTFAVMATQ..S......AK.AF......S..PVASLLTQDSYFYHRDDK-----GQALW--GQLPMTGA.....ICRNP.SASKesdwpA.DEYYWQAQPPNPAAK....PSSASSGVAG.....T....PYQSSNCYWKTYYVLQINlplLLDPLGIRSSlgIPPGQRSVSRRSFNHHSATGAGDPDGKKWHVLVPRKQ...........EYITDASMQ-.-...KTEVDTVFFTLYLAQG........TPATQPYKFMTYTEPP....SLPGcdpFN.TEH....WAVIRVRSAWELGNTRRPYV.WDVNWWNN--------vnainmt........
A0A0G4ANJ1_9VIRU/1-478               ............m---.-ARRPRGRYYHF.RRGRWHRHRRhprH.....R.R..G.Y....GR...R..FR..R.R...HyrgKHK.R....RSFnryvKRLFFNPKPGFYTVRLPNPYNRQNIFFQGLIL..V.PLGV---DNLSAVSYKSEF--CRVASITLSLRNLLLAVFPLDAISKAGGPIPDIITAY..H...TATeHQ...S..QN..LPpWTN.MPQKGN-....A...SATPFDWWRWSLIMMRPEDNVR.....RAQF..PYFpERVED....LLQILGGWHLFRHIKTTMVVMATR..G......MS.GF......D..PVASLFVQDSYWLSRTGN-PSIINENGNVKLQAPMPGGgvkgrIETST.ITGP.....PcDEYMFPSFPPQWS--....--DKTQPTQ-.....-....SFKQDNAFYCLACYPSFL...TLSALGAPWA..FPPTEKSVSRSSFNHHSVTGNNDPQGRRWMTFLPKPTalqvpnptghgETPTSSPGPTgPpptPTEIDTPIGVLFLAQTswgdfinhTWGTKPYNFGTTSDES...pNFPP...FS.RDTqnrpWAVIKLKSKWQLGNKQRPYW.YDTNWWK---------qsrtqfg........
B2REH4_9VIRU/1-449                   .............MAR.RARRPRGRFYAF.RRGRWHHLKR...L.....R.R..R.Y....KF...R..HR..R.R...Q...RYR.R....RAF....RKAFHNPRPGTYSVRLPNPQSTMTIRFQGVIF..L.TEGLILPKNSTAGGYADHMYGARVAKISVNLKEFLLASMNLTYVSKLGGPIAGELIAD..G...SKS.QA...A..EN..WP.NCW.LPLDNNV....P...SATPSAWWRWALMMMQPTDSCR.....FFNH..PKQ.MTLQD....MGRMFGGWHLFRHIETRFQLLATK..N......EG.SF......S..PVASLLSQGEYLTRRDDVKYSSDHQNRWRKGEQPMTGG.....IAYAT.GKMR.....P.DEQQYPAMPPDPPII....TSTTAQGTQV.....R....CMNSTQAWWSWDTYMSFA...TLTALGAQWS..FPPGQRSVSRRSFNHHKARGAGDPKGQRWHTLVPLGT...........ETITDSYMGA.P...ASEIDTNFFTLYVAQG........TNKSQQYKFGTATYAL....KEPV...MK.SDS....WAVVRVQSVWQLGNRQRPYP.WDVNWANSTMYWGSQP...............
F4ZDR2_9VIRU/1-456                   .............MARlRRRRPRGRFGFY.HRGRWHWRHR...L.....R.R..RrYsrrgKF...R..YA..R.R...R...SFD.R....RVK....RRIF-NPHPGSYVVRLPNPYNKLTLFFQGIVF..I.PEAQAFVKSTYTK---TNLTVCHVASINVNLREFMLATMPLDAKSKIGGPNPYPQHLQ..GcqwSAQ.TT...Q..DA..WP.YSA.GMSETKR....P...SVPPSEWWRWALLVMHPRAPGR.....FYNA..PKL.MTLDA....MGDLLGGWQLFRHVRTKFRVLATM..G......QG.AF......S..PVASLLVQNDYWSRGHLEGFPVKGA-PPMCTMQRKTQQ.....YGNVE.ANAP.....A.DEQWLPVNPPDPPVY....PNQGGCSQNVapgiyRl.agLQDSSRCFYSKACFPSFA...ALSAMGAPWS..FPSTQKPIQRGSFNKHSITGTGDPQGRRWLTLVPKGV...........EWITDDTMEQ.-...-TQLDTDIATLFLAQG........SPMWAPYKFGTFHKAM....AITA...MQ.TTP....WCVVKVRSIWQLGNQRQPYP.WQVNWYNE--------htatd..........
U5UAI8_9VIRU/1-133                   .........mvry---.RRRRPWGRLYKW.FRGGWHYKRR...P.....K.G..RwY....RSswgR..KR..RyH...H...RYR.RglfgRNF....KRSFYVQHPGSYTVRRTNPYNTQRLRFQGLIL..V.NNAVTQTGT-------SSVSNMRATAIEISLRGLLLA---------------------..-...---.--...-..--..--.---.-------....-...----------------------.....----..---.-----....------------------------..-......--.--......-..--------------------------------------.....-----.----.....-.---------------....----------.....-....------------------...----------..-------------------------------------...........----------.-...----------------........----------------....----...--.---....--------------------.----------------yfmnhstggpgwagd
U5U7Q9_9VIRU/4-453                   ...........yr--R.RARRPRGVFYSLgRRGWIRHRRR...R.....R.R..R.Tw.wgKF...R..HA..R.R...R...SFS.Q....RVK....R-RFHNPHPGTYLVRLPRPQTTLTIFFQGIVY..FpTAKMYASRNQLAD--LNKITTCRVGLMNINFREFLLAALPLDAYSKLGGPIVGPQYVS..G...GGS.SA...GthDEtmWP.FTA.RPVTNKQ....P...GASPAEWWRWALLLMFPREPNM.....FFRQ..PQQ.PTLEQ....MGEIFGGWQLYRHIKTKVAIMAAQ..D......GG.AF......S..PVASLVSQNNYFWRRQER-------GTPKTGEPPMTGM.....IRRGT.GSLEs..skPaDEYYIPANPPNPPDWpgesSAVIDTPYKI.....A....AVRSKSYVYSNMLFPSFS...ALSALGAAWA..FPPGRRSVGRGSFNRHTITGAGDPQGKKWLTLVPKKV...........EWITDDTMT-.-...QSEIDTTIATIYVAQG........APKASGYKFQTFQGPL....VDDP...LS.VQP....WAVMRVKSVWQLGNLRRPYP.WDVNWYNQVADW----...............
A0A2Z4N430_9VIRU/1-454               ...........ms---.RFRRYRGRYGYL.GRRRWRWRNR...R.....R.R..R.Y....RP...T..RR..L.RyryK...RYR.RrnsaRAI....RRLFFKPNPGTEPVRITKPYNSLGVTFQGIIL..I.PQTVAAWSLNVPQDQTDNYISSRVAKIDVSFANLLRAVLPLDYISKIGGPIPGRLQSQvtG...QPS.DTpppK..TG..WP.YAKpMTQDGQT....P...TSNPSEWWRWALLLMHPTDNVR.....FLTT..PQI.MNTEE....MGAMFAQYQLLRHEFTRFKVECID..D......GGlKW......S..PVASLAIQNQYWEIKSNPTSPYTAHTIVQPGTQ--TEI.....VNQAT.GPRT.....P.TDQDCPTRQY-PRYL....HNGQTPDKLA.....N....TFSTILCKETGYIFPSFA...TLSAMGAPWA..FPPQQKPVGRGSFNKHKMKGRNDPLKGPWMTLLPKNI...........CNVSENEMV-.-...GGDLNTIIGTLFLAQG........SNHYTTYKFMTMQDTV....QPLI...MQ.TRA....WAAVKIQSRWTLANTRRPYR.WDVAWSNTT-------gkfp...........
I7DCG0_9VIRU/194-349                 ..........vtn---.------------.----------...-.....-.-..-.-....--...-..--..-.-...-...---.-....---....--------------------------------..-.----------------------------------------------------------..-...---.--...-..--..--.---.-------....-...----------------------.....----..---.-----....------------------------..-......--.--......-..--------------------------------------.....-----.----.....-.--------TPDVRIL....ASLLTQDSYW.....Q....VQNKTSADLSQLKFPSFA...ELTAWGAQWA..FLPGQKSVSGRSFNHHSMRGTNDPKGEPWKTLTPLQH...........QVVS------.-...--DINWVFGTLFLAEF........SNFTVLNEYNTENRAL....AATG...L-.SET....WSIVKVRSLFEFGNQQYLL-.----------------adsvrftsh......
U5UAI8_9VIRU/127-227                 .gpgwagdsgtkv---.------------.----------...-.....-.-..-.-....--...-..--..-.-...-...---.-....---....--------------------------------..-.----------------------------------------------------------..-...---.--...-..--..--.---.-------....-...AISPLEWWRWAYIRIEPCNDGR.....VFGMavPHD.EV---....LYNWFCQWQLFKHVKTDLRVLNTD..V......RT.SA......EarIVASLLVQDSYW--------------------------.....-----.----.....-.---------------....----------.....-....------------------...----------..-------------------------------------...........----------.-...----------------........----------------....----...--.---....--------------------.----------------qvgnrgatqlsq...
I7DCG0_9VIRU/1-132                   .............MVR.FRRRPWGRLYAW.RRGGWHFKRR...P.....YgR..W.Yr.sgKY...RrgYR..R.H...R...RYAfS....KAF....KRKFYIQHPGSYVVRKTRPYNSMKVFFQGVIF..V.NNAVFQSGQAET-------SAFRVYSIELSLRNLLLAY-YVQYVS-------------..-...---.--...-..--..--.---.-------....-...----------------------.....----..---.-----....------------------------..-......--.--......-..--------------------------------------.....-----.----.....-.---------------....----------.....-....------------------...----------..-------------------------------------...........----------.-...----------------........----------------....----...--.---....--------------------.----------------ggpgwtgtsa.....
I7DCG0_9VIRU/123-214                 ggpgwtgtsaakv---.------------.----------...-.....-.-..-.-....--...-..--..-.-...-...---.-....---....--------------------------------..-.----------------------------------------------------------..-...---.--...-..--..--.---.-------....-...NISPLDWWRWAYIRMHPSPDQR.....VFAN..ATR.PTDTQ....LFNYFSQWQLFRHIKTDFRVLNTDvtN......TP.DV......R..ILASLLTQDSY---------------------------.....-----.----.....-.---------------....----------.....-....------------------...----------..-------------------------------------...........----------.-...----------------........----------------....----...--.---....--------------------.----------------wq.............
A0A2U9N6R0_9VIRU/1-417               ..........mgy---.---RSRGKFYTF.RRGRWRKHRR...FrpyrrR.R..R.F....RF...R..KR..KfR...P...RYGfR....RRF....KRAFWNQHPGSYVVRLPNPQNTLNLMFQGIVWfpL.PKYCINSTNTLKNIDVQNVITCRVGSIHISLKQFLLAVMSLSGTTKLGGPSIGKLYYE..A..kDKL.GQ...A..GN..YP.YME.KIASQTQ....S...ASLPSQWWRWAIMFMYPPDNKL.....IDYF..PAQ.PDPKD....LQNILGGWSLFRHKKTKVAIIATS..P......QG.NW......S..PVASLTSQDSYFMRHCSNVFA------VTKGNFPLSGA.....VGTKTpTSFL.....P.DECEYPSRPPQAEQT....NQTGIPGQCY....tRqpqdGLVETDCWYSQETFPSFG...TLSALGASWA..FPPGQRSFSHGSVNHHTITGSGDPEGQRWRTLNPLTT...........FPITSS---E.Q...GSDYDRVIASIYLAQG........SDQFLPYKYGTD----....----...--.---....--------------------.----------------qdqpnwrpqkftq..
#=GC seq_cons                        ..................hRR.hG+hh.h.hRtth+hh+R.........+.t..h.a....p....R..ht..p.t...p...pat.p....R.h....++hF...+PGoYsVRhspP.sp.plhFQGllh..l.s.t....tt........p....+VstIplshtphhhA....phho.........................................................s..P.tWWRWAhhhM.P..s.h.....h.....st...p.pt....h.phhutapLa+HhcTphtlhss...s......tt.sh......p...lASLhsQspYh...................................................................................................ha.sF....tLoAhGA.Wu..F.ssp+shtptSFN+HphpGssDP.up.Whsh.Ph................ops..........sphshshhslalAph........o.h....pa.T.p..............h.........Wshh+lpS.a.huN....h.................................
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