#=GF ID   HHV-1_VABD
#=GF AC   PF16852.9
#=GF DE   Herpes viral adaptor-to-host cellular mRNA binding domain
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   pdb_2kt5
#=GF GA   27.00 27.00;
#=GF TC   28.50 81.20;
#=GF NC   24.70 24.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP   Motif
#=GF RN   [1]
#=GF RM   21253573
#=GF RT   Structural basis for the recognition of cellular mRNA export
#=GF RT   factor REF by herpes viral proteins HSV-1 ICP27 and HVS ORF57.
#=GF RA   Tunnicliffe RB, Hautbergue GM, Kalra P, Jackson BR, Whitehouse
#=GF RA   A, Wilson SA, Golovanov AP;
#=GF RL   PLoS Pathog. 2011;7:e1001244.
#=GF DR   INTERPRO; IPR031752;
#=GF DR   SO; 0001067; polypeptide_motif;
#=GF CC   HHV-1_VABD is the short region of the Herpes simplex 1 virus'
#=GF CC   specific signature adaptor protein that binds to the cellular
#=GF CC   mRNA export factor such as mouse REF [1].
#=GF SQ   4
#=GS ICP27_HHV11/99-138   AC P10238.1
#=GS L0N6L4_HHV1/99-138   AC L0N6L4.1
#=GS K9MFZ7_9ALPH/96-137  AC K9MFZ7.1
#=GS ICP27_HHV2H/97-138   AC P28276.1
ICP27_HHV11/99-138              PAPHS--VWSRLGARRPSCSPEQHGGKVARLQPPPTKAQPAR
L0N6L4_HHV1/99-138              PAPHS--VWSRLGARRPSCSPEQHGGKVARLQPPPTKAQPAR
K9MFZ7_9ALPH/96-137             PPPATTGVWARLGARRSPSPREPHGGKVARIQPPSTKAPHTR
ICP27_HHV2H/97-138              PPPATTGVWSRLGTRRSASPREPHGGKVARIQPPSTKAPHPR
#=GC seq_cons                   PsPto..VWSRLGARRsuss.E.HGGKVARlQPPsTKA..sR
//