#=GF ID HTH_37
#=GF AC PF13744.10
#=GF DE Helix-turn-helix domain
#=GF AU Coggill P;0000-0001-5731-1588
#=GF SE Jackhmmer:Q5HBM9
#=GF GA 27.00 27.00;
#=GF TC 27.00 27.00;
#=GF NC 26.90 26.90;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP Domain
#=GF CL CL0123
#=GF DR INTERPRO; IPR039554;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC Members of this family contains a DNA-binding helix-turn-helix
#=GF CC domain.
#=GF SQ 1546
#=GS T0GLE4_9SPHN/17-89 AC T0GLE4.1
#=GS A0A1L6HS47_9BURK/12-88 AC A0A1L6HS47.1
#=GS T0AT36_9RHOO/18-97 AC T0AT36.1
#=GS A0A379LSS6_ENTAG/13-91 AC A0A379LSS6.1
#=GS A0A6N8TJK3_SHIZO/8-89 AC A0A6N8TJK3.1
#=GS F4XIY2_9CYAN/16-97 AC F4XIY2.1
#=GS A0A0N1JRH5_9NEIS/11-90 AC A0A0N1JRH5.1
#=GS A0A397S3E4_9GLOM/28-107 AC A0A397S3E4.1
#=GS A0A5B9W6N2_9BACT/85-167 AC A0A5B9W6N2.1
#=GS A0A2N7VKV9_9BURK/40-111 AC A0A2N7VKV9.1
#=GS A0A1A8XTH0_9PROT/15-94 AC A0A1A8XTH0.1
#=GS Q2RVZ9_RHORT/14-90 AC Q2RVZ9.1
#=GS D8MJX5_ERWBE/7-88 AC D8MJX5.1
#=GS A0A418NPR0_9SPHN/17-96 AC A0A418NPR0.1
#=GS A0A4V1VBA0_9BURK/40-110 AC A0A4V1VBA0.1
#=GS Q32EH1_SHIDS/12-91 AC Q32EH1.1
#=GS A0A3S0R4X7_9PROT/72-149 AC A0A3S0R4X7.1
#=GS A0A2S9H4C2_9BURK/14-92 AC A0A2S9H4C2.1
#=GS A0A0H1SCQ2_9MOLU/38-113 AC A0A0H1SCQ2.1
#=GS A0A3N4AFE9_9PSED/1-68 AC A0A3N4AFE9.1
#=GS A0A344PK45_9RHOB/12-89 AC A0A344PK45.1
#=GS A0A257CT65_9BURK/7-88 AC A0A257CT65.1
#=GS A0A239MBR0_9ACTN/15-102 AC A0A239MBR0.1
#=GS A1WNI5_VEREI/12-93 AC A1WNI5.1
#=GS A0A2K3UXL9_9DEIO/1-62 AC A0A2K3UXL9.1
#=GS A0A1T2L5D1_9GAMM/18-99 AC A0A1T2L5D1.1
#=GS H8Z703_9GAMM/15-95 AC H8Z703.1
#=GS A0A1Q5DHQ8_9ACTN/1-60 AC A0A1Q5DHQ8.1
#=GS A0A0D7EPK8_RHOPL/12-91 AC A0A0D7EPK8.1
#=GS A0A6S7BFN9_9BURK/12-90 AC A0A6S7BFN9.1
#=GS A0A367RSV2_9NOSO/8-89 AC A0A367RSV2.1
#=GS A0A0Q9AQC4_9ACTN/27-103 AC A0A0Q9AQC4.1
#=GS A0A7W3ZH18_9HYPH/17-110 AC A0A7W3ZH18.1
#=GS A0A0Q6MJ84_9BURK/12-90 AC A0A0Q6MJ84.1
#=GS A0A418WF20_9PROT/7-88 AC A0A418WF20.1
#=GS A0A1Q9TZC4_9ACTN/1-51 AC A0A1Q9TZC4.1
#=GS A0A5M3XQN7_9ACTN/27-103 AC A0A5M3XQN7.1
#=GS Q12AL5_POLSJ/16-95 AC Q12AL5.1
#=GS E5AQG1_MYCRK/1-49 AC E5AQG1.1
#=GS A0A1Y2R412_9BURK/16-95 AC A0A1Y2R412.1
#=GS A0A1H5XZ06_9HYPH/8-89 AC A0A1H5XZ06.1
#=GS A0A1C6P1B0_9BURK/14-92 AC A0A1C6P1B0.1
#=GS A0A0D7K625_9BURK/18-97 AC A0A0D7K625.1
#=GS A8ZP80_ACAM1/15-96 AC A8ZP80.1
#=GS A0A6C2U0U0_9BACT/8-88 AC A0A6C2U0U0.1
#=GS B6IMI0_RHOCS/13-89 AC B6IMI0.1
#=GS A0A1A8XLB9_9RHOO/17-110 AC A0A1A8XLB9.1
#=GS A0A191ZFJ3_9GAMM/15-106 AC A0A191ZFJ3.1
#=GS A0A073CFF7_PLAAG/1-61 AC A0A073CFF7.1
#=GS A0A173L2R5_9SPHN/15-94 AC A0A173L2R5.1
#=GS A0A140XG30_9CAUD/9-86 AC A0A140XG30.1
#=GS M4V4M2_9PROT/26-100 AC M4V4M2.1
#=GS A0A367YXB8_9ACTN/25-80 AC A0A367YXB8.1
#=GS A0A7D7JW25_9CAUD/2-73 AC A0A7D7JW25.1
#=GS A0A3N1KYT5_9PROT/14-93 AC A0A3N1KYT5.1
#=GS A0A1G8AEV9_9HYPH/18-97 AC A0A1G8AEV9.1
#=GS A0A4S3KKB5_9GAMM/13-91 AC A0A4S3KKB5.1
#=GS A0A2G4EXI6_9CYAN/13-94 AC A0A2G4EXI6.1
#=GS A0A1Z4JHU7_LEPBY/13-94 AC A0A1Z4JHU7.1
#=GS A0A2A3XEA3_9GAMM/20-88 AC A0A2A3XEA3.1
#=GS A0A4Q5NM65_9BACT/12-91 AC A0A4Q5NM65.1
#=GS G6E6N6_9SPHN/7-86 AC G6E6N6.1
#=GS A0A378TAJ2_9MYCO/17-97 AC A0A378TAJ2.1
#=GS A0A423UI41_9ACTN/12-90 AC A0A423UI41.1
#=GS A0A5B8SQR2_9GAMM/12-90 AC A0A5B8SQR2.1
#=GS A0A0M1JY38_9CYAN/14-93 AC A0A0M1JY38.1
#=GS A0A2S6CVS1_9CYAN/8-89 AC A0A2S6CVS1.1
#=GS A0A1G9IB11_9GAMM/11-83 AC A0A1G9IB11.1
#=GS B6IUI2_RHOCS/12-90 AC B6IUI2.1
#=GS A0A494WTI8_9FIRM/22-92 AC A0A494WTI8.1
#=GS A0A0S1XVA5_9BORD/12-90 AC A0A0S1XVA5.1
#=GS A0A161R1M4_9BRAD/13-92 AC A0A161R1M4.1
#=GS G8QN35_AZOOP/18-97 AC G8QN35.1
#=GS Q2Y7H2_NITMU/17-94 AC Q2Y7H2.1
#=GS A0A7I7SI39_9MYCO/15-93 AC A0A7I7SI39.1
#=GS A0A4R5KYP6_9MICC/2-79 AC A0A4R5KYP6.1
#=GS A0A068NR68_FIMGI/13-92 AC A0A068NR68.1
#=GS K9PUI7_9CYAN/10-90 AC K9PUI7.1
#=GS K9UDK5_CHAP6/11-92 AC K9UDK5.1
#=GS A0A0R0MM15_9BURK/19-99 AC A0A0R0MM15.1
#=GS A0A1D8AWC9_9BACT/22-96 AC A0A1D8AWC9.1
#=GS A0A011PBX7_9PROT/5-88 AC A0A011PBX7.1
#=GS A0A8J7KKR5_9ACTN/14-99 AC A0A8J7KKR5.1
#=GS A0A1L9QX87_9CYAN/11-91 AC A0A1L9QX87.1
#=GS A5GA29_GEOUR/12-93 AC A5GA29.1
#=GS A0A401JCN7_9PROT/15-93 AC A0A401JCN7.1
#=GS B1ZA25_METPB/14-93 AC B1ZA25.1
#=GS A0A518HEF0_9BACT/25-104 AC A0A518HEF0.1
#=GS A0A5B9W4W8_9BACT/9-89 AC A0A5B9W4W8.1
#=GS A0A1V3NVA6_9GAMM/16-90 AC A0A1V3NVA6.1
#=GS A0A2W1JHS4_9CYAN/14-93 AC A0A2W1JHS4.1
#=GS A0A397FSD8_9MOLU/33-101 AC A0A397FSD8.1
#=GS A0A6I4T4P4_9SPHN/205-282 AC A0A6I4T4P4.1
#=GS A0A853I7S5_9GAMM/13-88 AC A0A853I7S5.1
#=GS A0A5C4XQE4_9HYPH/15-94 AC A0A5C4XQE4.1
#=GS A0A1E4USN4_9PSED/11-90 AC A0A1E4USN4.1
#=GS A0A0J7XHE8_9SPHN/15-94 AC A0A0J7XHE8.1
#=GS E8UYM1_TERSS/11-92 AC E8UYM1.1
#=GS T0KDD9_9SPHN/12-90 AC T0KDD9.1
#=GS A0A7V8TUL3_9GAMM/13-91 AC A0A7V8TUL3.1
#=GS A0A1U9KQW0_9PROT/10-90 AC A0A1U9KQW0.1
#=GS A0A2U2I6F2_9BURK/23-116 AC A0A2U2I6F2.1
#=GS A0A063BCJ4_9BURK/14-107 AC A0A063BCJ4.1
#=GS Q2GF16_NEOSM/20-99 AC Q2GF16.1
#=GS A0A829YKL0_9GAMM/24-103 AC A0A829YKL0.1
#=GS A0A2V1IX77_9BACT/4-60 AC A0A2V1IX77.1
#=GS A0A7K3NKB4_9DELT/14-91 AC A0A7K3NKB4.1
#=GS A0A6M0K7Y3_9GAMM/8-89 AC A0A6M0K7Y3.1
#=GS A0A7K4ELJ0_9PSED/12-86 AC A0A7K4ELJ0.1
#=GS A0A0N7CDP3_9CAUD/17-95 AC A0A0N7CDP3.1
#=GS A0A1B3NLF4_9HYPH/9-90 AC A0A1B3NLF4.1
#=GS A0A6J4Y0A4_9DELT/22-95 AC A0A6J4Y0A4.1
#=GS A0A1Q8YK66_9BURK/13-91 AC A0A1Q8YK66.1
#=GS A0A841JYU9_9BACT/7-87 AC A0A841JYU9.1
#=GS A0A346QXZ6_9HYPH/13-92 AC A0A346QXZ6.1
#=GS A0A1X7MVQ4_9HYPH/15-93 AC A0A1X7MVQ4.1
#=GS A0A410UF70_9GAMM/16-95 AC A0A410UF70.1
#=GS A0A4R0XJI6_9BURK/12-91 AC A0A4R0XJI6.1
#=GS A0A1W1V8B5_9DEIO/8-69 AC A0A1W1V8B5.1
#=GS A0A240U7Y0_9BURK/13-92 AC A0A240U7Y0.1
#=GS A0A2U8I997_9GAMM/11-90 AC A0A2U8I997.1
#=GS A0A1B2IE28_9CAUD/8-80 AC A0A1B2IE28.1
#=GS A0A1N7RJ01_9BURK/10-88 AC A0A1N7RJ01.1
#=GS Q4CA56_CROWT/15-94 AC Q4CA56.1
#=GS A0A066UGR2_9GAMM/9-59 AC A0A066UGR2.1
#=GS A0A839VJY8_9BURK/18-111 AC A0A839VJY8.1
#=GS U9W1V0_9CYAN/20-94 AC U9W1V0.1
#=GS A0A2K9JLQ6_9RHOB/17-110 AC A0A2K9JLQ6.1
#=GS A0A2S7K3R7_9PROT/4-89 AC A0A2S7K3R7.1
#=GS A0A366F4J9_9HYPH/7-89 AC A0A366F4J9.1
#=GS A0A1N7S5I0_9BURK/17-110 AC A0A1N7S5I0.1
#=GS A0A7U7GAP6_9GAMM/11-90 AC A0A7U7GAP6.1
#=GS A0A060NMM3_9BURK/9-92 AC A0A060NMM3.1
#=GS A0A556ACR4_9BURK/24-99 AC A0A556ACR4.1
#=GS A0A3M6QBF8_9BURK/13-91 AC A0A3M6QBF8.1
#=GS A0A1I9L2L2_9CAUD/12-85 AC A0A1I9L2L2.1
#=GS A0A315AJT9_9BURK/14-95 AC A0A315AJT9.1
#=GS F7UUY1_EEGSY/16-95 AC F7UUY1.1
#=GS A0A0S3PPH0_9BRAD/13-90 AC A0A0S3PPH0.1
#=GS A0A1C9LW94_9CAUD/1-70 AC A0A1C9LW94.1
#=GS A0A0F3NLW9_9RICK/2-76 AC A0A0F3NLW9.1
#=GS A0A149VV42_9PROT/12-90 AC A0A149VV42.1
#=GS K9R9T3_9CYAN/14-93 AC K9R9T3.1
#=GS Q2LRT4_SYNAS/10-88 AC Q2LRT4.1
#=GS A0A2T1C237_9CYAN/14-93 AC A0A2T1C237.1
#=GS T0SHI0_9PROT/26-101 AC T0SHI0.1
#=GS A0A011MK81_9PROT/13-93 AC A0A011MK81.1
#=GS A0A1Z9YXW7_9GAMM/8-88 AC A0A1Z9YXW7.1
#=GS A0A494XPX4_9BURK/18-97 AC A0A494XPX4.1
#=GS Q7MYA4_PHOLL/39-112 AC Q7MYA4.1
#=GS A0A251WL94_9CYAN/13-94 AC A0A251WL94.1
#=GS A0A1H1L513_9BACT/22-96 AC A0A1H1L513.1
#=GS A0A3M9M560_9MICO/22-97 AC A0A3M9M560.1
#=GS A0A317NL04_9GAMM/20-85 AC A0A317NL04.1
#=GS A0A366HCN4_9BURK/18-97 AC A0A366HCN4.1
#=GS A0A401IHH2_APHSA/16-97 AC A0A401IHH2.1
#=GS A0A1X7A6M4_9RHOB/12-91 AC A0A1X7A6M4.1
#=GS A0A2A2TLI1_9CYAN/14-93 AC A0A2A2TLI1.1
#=GS A0A1H1W5T5_9PSED/5-88 AC A0A1H1W5T5.1
#=GS A0A7W8M7X4_9BURK/103-181 AC A0A7W8M7X4.1
#=GS V2I2B2_9BURK/13-92 AC V2I2B2.1
#=GS A0A1A6FQ69_9HYPH/12-86 AC A0A1A6FQ69.1
#=GS A0A5K7XJY5_9BACT/23-95 AC A0A5K7XJY5.1
#=GS A0A7W3ZH80_9HYPH/12-84 AC A0A7W3ZH80.1
#=GS A0A8J7A6L8_9CYAN/11-91 AC A0A8J7A6L8.1
#=GS B8IJ03_METNO/11-90 AC B8IJ03.1
#=GS K9W5W5_9CYAN/9-89 AC K9W5W5.1
#=GS A0A2N8KLF2_9BURK/35-110 AC A0A2N8KLF2.1
#=GS A0A246JUN3_9SPHN/77-158 AC A0A246JUN3.1
#=GS A0A0C5JME3_9RHOO/11-90 AC A0A0C5JME3.1
#=GS A0A139XF35_9CYAN/14-93 AC A0A139XF35.1
#=GS A0A1S5R3V5_9CAUD/7-81 AC A0A1S5R3V5.1
#=GS A0A1H5Z9P7_9RHOO/12-90 AC A0A1H5Z9P7.1
#=GS G8Q1B1_PSEO1/3-80 AC G8Q1B1.1
#=GS Q2Y596_NITMU/16-95 AC Q2Y596.1
#=GS A0A3D9Z575_9HYPH/8-89 AC A0A3D9Z575.1
#=GS A0A239I8B5_9SPHN/11-86 AC A0A239I8B5.1
#=GS A0A0J7XGS9_9SPHN/12-90 AC A0A0J7XGS9.1
#=GS A0A327L5A0_9HYPH/19-98 AC A0A327L5A0.1
#=GS A0A4D7C919_9SPHN/22-101 AC A0A4D7C919.1
#=GS A0A6I6EUD7_9GAMM/2-66 AC A0A6I6EUD7.1
#=GS A0A344L6F2_9PSEU/20-100 AC A0A344L6F2.1
#=GS H0HWQ9_9HYPH/205-282 AC H0HWQ9.1
#=GS A0A514WQQ0_9SPHN/15-94 AC A0A514WQQ0.1
#=GS A0A2G3JZ48_9BURK/11-90 AC A0A2G3JZ48.1
#=GS A0A1R3U2T2_9HYPH/206-282 AC A0A1R3U2T2.1
#=GS A0A8J7EX51_9CYAN/20-89 AC A0A8J7EX51.1
#=GS H6QZT2_NOCCG/20-99 AC H6QZT2.1
#=GS A0A7W6EI63_9HYPH/8-89 AC A0A7W6EI63.1
#=GS C4K621_HAMD5/5-89 AC C4K621.1
#=GS A0A7K0CZI6_9NOCA/12-90 AC A0A7K0CZI6.1
#=GS A0A8J3Z9G5_9ACTN/10-94 AC A0A8J3Z9G5.1
#=GS G2IL32_SPHSK/6-89 AC G2IL32.1
#=GS A0A5B8S0N6_9BURK/13-92 AC A0A5B8S0N6.1
#=GS A0A1X7NJT1_9HYPH/12-90 AC A0A1X7NJT1.1
#=GS A0A1R4HJ23_9GAMM/13-93 AC A0A1R4HJ23.1
#=GS A1VKY3_POLNA/58-137 AC A1VKY3.1
#=GS W2TJG3_NECAM/12-87 AC W2TJG3.1
#=GS A0A1H0MXW9_9BRAD/16-95 AC A0A1H0MXW9.1
#=GS W4L5F7_9BACT/10-91 AC W4L5F7.1
#=GS A0A327JWU4_9HYPH/16-95 AC A0A327JWU4.1
#=GS A0A679HRB0_9BACT/17-98 AC A0A679HRB0.1
#=GS A0A848FAJ0_9BURK/13-91 AC A0A848FAJ0.1
#=GS A0A843T4R9_9BACT/14-93 AC A0A843T4R9.1
#=GS A0A0N0JAN4_9HYPH/12-90 AC A0A0N0JAN4.1
#=GS A0A844MRF6_9CYAN/9-89 AC A0A844MRF6.1
#=GS A0A1H9EIK5_9ACTN/11-91 AC A0A1H9EIK5.1
#=GS W6MDT7_9GAMM/4-88 AC W6MDT7.1
#=GS A0A1S1NKV1_9MYCO/5-84 AC A0A1S1NKV1.1
#=GS A0A1J1LH92_9CYAN/20-101 AC A0A1J1LH92.1
#=GS A0A077ATS1_9PROT/11-90 AC A0A077ATS1.1
#=GS A0A418WUQ2_9PROT/1-68 AC A0A418WUQ2.1
#=GS A0A1Z4UJZ7_9CYAN/14-93 AC A0A1Z4UJZ7.1
#=GS A0A0H1SHF8_9MOLU/28-104 AC A0A0H1SHF8.1
#=GS A0A4R4PAT4_9ACTN/18-100 AC A0A4R4PAT4.1
#=GS A0A6J4XN61_9DELT/8-88 AC A0A6J4XN61.1
#=GS A0A1P8KEE4_9BURK/17-95 AC A0A1P8KEE4.1
#=GS A0A2T0VMI0_9GAMM/21-86 AC A0A2T0VMI0.1
#=GS A0A1W2AND6_9BURK/12-93 AC A0A1W2AND6.1
#=GS A0A0A1H5I3_9BURK/12-90 AC A0A0A1H5I3.1
#=GS A0A248KKI7_9ENTR/12-91 AC A0A248KKI7.1
#=GS A0A0J5LUX0_PLUGE/204-281 AC A0A0J5LUX0.1
#=GS H0HSY6_9HYPH/12-90 AC H0HSY6.1
#=GS A0A1H1H6N3_9HYPH/12-90 AC A0A1H1H6N3.1
#=GS A0A011NI02_9PROT/12-90 AC A0A011NI02.1
#=GS A0A1B9EPD1_9ACTN/20-103 AC A0A1B9EPD1.1
#=GS A0A0N0K4B9_9SPHN/8-89 AC A0A0N0K4B9.1
#=GS E5AKM1_MYCRK/18-97 AC E5AKM1.1
#=GS Q89TC4_BRADU/14-93 AC Q89TC4.1
#=GS A0A1H3PIE0_9PROT/15-98 AC A0A1H3PIE0.1
#=GS A0A0U3EDD0_9CAUD/3-68 AC A0A0U3EDD0.1
#=GS A0A1M7Q2E9_9ACTN/20-98 AC A0A1M7Q2E9.1
#=GS Q21ZL6_ALBFT/13-86 AC Q21ZL6.1
#=GS A0A401IMI9_APHSA/14-93 AC A0A401IMI9.1
#=GS A0A1G4VJ79_9FIRM/11-85 AC A0A1G4VJ79.1
#=GS A0A4R2QQC7_9PSEU/20-100 AC A0A4R2QQC7.1
#=GS A0A7T1KTC1_9CAUD/7-83 AC A0A7T1KTC1.1
#=GS A0A263HDV9_9PAST/5-89 AC A0A263HDV9.1
#=GS A0A852V547_9ACTN/23-103 AC A0A852V547.1
#=GS A0A1H6E3E3_9ACTN/6-74 AC A0A1H6E3E3.1
#=GS A0A097R0L2_HAFAL/14-93 AC A0A097R0L2.1
#=GS A0A098GK17_TATMI/13-91 AC A0A098GK17.1
#=GS A0A0L0MEL5_9BURK/18-111 AC A0A0L0MEL5.1
#=GS A0A1D9H6I9_9BURK/11-88 AC A0A1D9H6I9.1
#=GS Q19XK1_9CAUD/4-67 AC Q19XK1.1
#=GS S4TNX3_9CAUD/4-78 AC S4TNX3.1
#=GS A0A512JRF2_9HYPH/2-76 AC A0A512JRF2.1
#=GS A0A366E359_9NOCA/18-96 AC A0A366E359.1
#=GS A0A1Q8J2Q2_9BURK/37-110 AC A0A1Q8J2Q2.1
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