#=GF ID Hanta_nucleocap
#=GF AC PF00846.22
#=GF DE Hantavirus nucleocapsid protein
#=GF AU Bateman A;0000-0002-6982-4660
#=GF SE Pfam-B_310 (release 3.0)
#=GF GA 27.00 27.00;
#=GF TC 27.20 49.90;
#=GF NC 22.80 17.00;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP Family
#=GF RN [1]
#=GF RM 9208453
#=GF RT A major antigenic domain of hantaviruses is located on the
#=GF RT aminoproximal site of the viral nucleocapsid protein.
#=GF RA Gott P, Zoller L, Darai G, Bautz EK;
#=GF RL Virus Genes 1997;14:31-40.
#=GF RN [2]
#=GF RM 8578853
#=GF RT Nucleocapsid- and virus-like particles assemble in cells
#=GF RT infected with recombinant baculoviruses or vaccinia viruses
#=GF RT expressing the M and the S segments of Hantaan virus.
#=GF RA Betenbaugh M, Yu M, Kuehl K, White J, Pennock D, Spik K,
#=GF RA Schmaljohn C;
#=GF RL Virus Res 1995;38:111-124.
#=GF DR INTERPRO; IPR002214;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF SQ 8
#=GS A0A1B0WVF3_9VIRU/1-429 AC A0A1B0WVF3.1
#=GS A0A0H3XSH2_9VIRU/1-428 AC A0A0H3XSH2.1
#=GS R4JAH8_9VIRU/1-429 AC R4JAH8.1
#=GS M9QY21_9VIRU/1-423 AC M9QY21.1
#=GS A0A6G5X094_9VIRU/93-403 AC A0A6G5X094.1
#=GS NCAP_HANTV/1-429 AC P05133.1
#=GS A0A5B7LJX1_9VIRU/22-448 AC A0A5B7LJX1.1
#=GS A0A6M3EUQ1_9VIRU/1-433 AC A0A6M3EUQ1.1
A0A1B0WVF3_9VIRU/1-429 ...................MASVKELEEEQQRIERELSIAQAKLTDAKSKiTESDkP...DDLDIKMFNERAETVSN.LRQRLEETKRMIAEDIKKSVN.QKPQ.....KKGTDLDDDEHLTERSSLRYGNVIDLNDTDIDEPSGSSADWISIVGYLLSFSLV.....IILKALYMLTTRGRQTIKENKGNRIRFKDDSSF.TEKGGVKIPKHLYVSLPTGQSSMKADEITPGRYKTAVCGLYPAEAKARKLVSPVMGVIGFNALVDKWEDTVSEMMLEPCQFI.EGN...L-M-SQPEDLTNAAYFAKREEDLRGVRSPDMVQLYDLAKSAGCKLVNDITEPHAPWVFACAPDRCPPTALYVAGLAELGAFFSILQDMRNTI..MASKLVGTAEEKLKRKSSFYQSYLRRTQSMGIQLDQRIIVIFMLSWGKMMTDHFHLGDDMDADLRKVCQSLIDEKVKQISNQDALKL...............
A0A0H3XSH2_9VIRU/1-428 ...................MADIERLIAEGLEIEKELMTARIRLQEAKEA.AERN.P...DELNLKGVDARQGVVTA.LEQKSAENQRLIAEQRHTLPP.TKPL.....KKPTDLDDDEHLTERSTLRYGSVIDLNDLDIDEPSGASANWVAICTYILGFGAT.....ILLKALYMLTTRGRQTIKEHKGNRVRFRDDSSY.TEKGGVKVPKHLYVSLPTAQSAIKAEELTPGRFRTIVCGLYPSEAKVRGLISPVMGVIGFQYLAQNWSEMIHRFMHMRCPFI.EN-...PGLQVDSALLTNQAYFEMRSDALEKIEAVEIRSIREDAIDNDRKLINDILQPDAPWLFAGAPDRCPPTSLYVAGIPELGAFLALMQDVRNAI..MASKMTGTVEEKIKRKSSFYQSYMRRTQSMGMQMDQRIIHLFVMAWGKLMIDHFNLGDDMDPALRQMCQALLDEKVKEICNNEPMRL...............
R4JAH8_9VIRU/1-429 ...................MGDIKELERELKNVEGQLEIAQKKLERATSD.YQTD.D...DETNKATYD-RRTLEVSqLQAKIAQLKKSLADATAAGRQsMAAA.....EDPTGKESDDYLGQRSMLRYGNTIDVNAIDLDEPSGQTADWISIITYILTFVDT.....ILLKGLYMLTTRGRQTVKDNKGTRIRLKDDTSF.VDTETGRKPRHLYISMPNAQSSMRADEITPGRYRTVVCGLFPAQVRQRQMISPVMGVIGFPVIAKNWTDRIEQFLASDCPFL.KQV...LQVALL-SPDKNRDFISDRQANLDKMITEEARKIQDAIAAKSHTVPTSLDSPFSVWVFAGAPDRCPPTSLYVAGMAELGAFFSILQDMRNTI..IASKTVGTAEEKLKKKSSFYQSYLRRTQSMGVQLDQRIIVLYMTAWGKEAVDHFHLGDDMDPELRATAQNLIDQKVKEISNMEPMKL...............
M9QY21_9VIRU/1-423 ...................MATGRDLQDELEQIEQEITQAKAKYEKQKAA.IGEE.P...DTIELKVLQQREETIHM.LEEKRKELLQRIAQQMKSPRQ.PVKG.....RD---LDEDEHLSERSTLRYGNVIDLEELDIDEPAGGSADWLAIGIYIFSFPVQ.....LLLKTLYILTTRGRQTIKENKGNRLRFKDSSST.MDVNGVKTPRHLYISLPTAQSSMKTEEITPGRYRTVACGILSGEMRARKLVSPVMGVIGFNYLAEKWGEYIDAFLMKQSPHL.PVS...TGS---PESATNFAYLIQRQDVLNKSKTVEYLELWEQAEKAGRHLVDRIESPLTPWLFAGSPDRCPPTSLYVAGIAELGAFFSILQDIRNAI..MASKLVGTAEEKLKRKSSFYQSYLRRTQSMGVQLDQRIIILYMMEWGKMMVDHFHLGDDMDSELRKACQSLIDEKVAQVSNQEALKL...............
A0A6G5X094_9VIRU/93-403 spgqedgeeqeesqgfqga-------------------------------.----.-...-----------------.---------------------.----.....-------------PKSRLREGVTSDLSNMDPENMSGEAVSWASVSEQVFRGTQPtgslsLVRKLYHMIGVRGKAQKQEHKSTQVVYTDSVPI.ED--GTRVSHRMAISFPNATSSIGKDEMTPSRFLAAAIPYVSEYAHEKKLCSPISAANG--------SSKV---LESAAELI.YDL...ND--SIGGF---KSVMEARRAAYESLEIPNRSVITDWDERCGCKVRNPSCSEEGLRSILLSPSAPGPSSLLVSFGPEFGLLNAVMSDVRARLkvVSMGVLATADDKMKASTTFGKSYKRRLEQFGVAISQE--------------------------------------------------kyntlyaaaspywik
NCAP_HANTV/1-429 ...................MATMEELQREINAHEGQLVIARQKVRDAEKQ.YEKD.P...DELNKRTLTDREGVAVS.IQAKIDELKRQLADRIATGKN.LGKE.....QDPTGVEPGDHLKERSMLSYGNVLDLNHLDIDEPTGQTADWLSIIVYLTSFVVP.....ILLKALYMLTTRGRQTTKDNKGTRIRFKDDSSF.EDVNGIRKPKHLYVSLPNAQSSMKAEEITPGRYRTAVCGLYPAQIKARQMISPVMSVIGFLALAKDWSDRIEQWLIEPCKLL.PDT...AAVSLLGGPATNRDYLRQRQVALGNMETKESKAIRQHAEAAGCSMIEDIESPSSIWVFAGAPDRCPPTCLFIAGIAELGAFFSILQDMRNTI..MASKTVGTSEEKLRKKSSFYQSYLRRTQSMGIQLGQRIIVLFMVAWGKEAVDNFHLGDDMDPELRTLAQSLIDVKVKEISNQEPLKL...............
A0A5B7LJX1_9VIRU/22-448 .....lsdlrkkedeirqd-------------------IARKEAKIKETQ.S-LD.PntlDDGDKKLLQDRLEGVVL.LKERLSGVQSDIAALA-EKAK.LASVakpsgQGRKDMDPDDHLEQRSQLRYGSVVNLDDLNIDEPAGGSADWLKIIQYILPFPLT.....MVLKALYMLTTRGRAFIKEHKGNRIRFQDTTSFsEDARGGRTPKHLFLSLATAQSSIRAEEITPGRFKTVVCGFYAAEVRARKLVSPVMGVVGFNHLADTWHDKIQEFESGDCPLI.E-I...DDVSRQ---PCFADYFEARAQQLYQPRAEFIQQMEFAAEANGLHPVKWITEPTSIWVFACGPDRCPPSVLHVPGMPELGAFFALLQDIRNLI..MASKLVGTSEEKLRKKSAFFQSYIRRTQSMGVQIDQRLVVSFLRYWGHEMVEHFHLGDDMDANLRKAAQNLIDFKVKEVSSQEPLKL...............
A0A6M3EUQ1_9VIRU/1-433 ...................MSNLKEIQEDITRYEQQLVVARQKLKDAEKA.VEMD.P...DDVNKNTLQVRRQAVSA.LEDKLADFKRQMADMVSHQKM.AEKP.....ADPTGIEPDDHLKERSNLRYGNVLDVNAIDIEEPSGQTADWLSIGIYVIGFALP.....IILKALYMLSTRGRQTVKENKGTRIRFKDDSSF.EDVNGIRRPKHLYVSMPTAQSTMKAEELTPGRFRTIVCGLFPAQIQVRNIISPVMGVIGFAFFVKEWPERIKAFLNKSCPFIkPEVrpgAPASETEFLSRNQIYFMKRQEVLDKNHIPDIEKLIEYASSGDPTAPDSIESPYAPWVFACAPDRCPPTCIYLAGVAELGAFFSILQDMRNTI..MASKTVGTAEEKMKKKSSFYQSYLRRTQSMGIQLDQRIILLYMIEWGKEMIDHFHLGDDMDPELRALAQALIDQKVKEISNQEPLKI...............
#=GC seq_cons ...................Mushc-LpcEhpphEtpL.lA+tKlccAcpt.hppD.P...D-lsh+slptRppslss.LcpKls-hp+plA-thtpttp.htt......pcsTsl-sD-HLpERSpLRYGNVlDLNclDIDEPSGpoADWlSIstYlluFsls.....IlLKALYMLTTRGRQTlKENKGsRIRFKDDSSF.pDssGlRpPKHLYlSLPTAQSSMKAEEITPGRaRTlVCGLaPAps+sRpLlSPVMGVIGFshLAcpWs-+IcpFLtpsCPaI..ss...ssst..st.ssNpsYhppRpssLcphcss-hpplp-tAcusGp+llssIpSPpusWVFAsAPDRCPPTuLYVAGlAELGAFFSILQDhRNsI..MASKhVGTAEEKLK+KSSFYQSYLRRTQSMGlQLDQRIIlLaMhtWGK.MlDHFHLGDDMDs-LRphsQuLIDpKVKEISNQEPLKL...............
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