#=GF ID   Herpes_capsid
#=GF AC   PF06112.15
#=GF DE   Gammaherpesvirus capsid protein
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_9200 (release 9.0)
#=GF GA   25.00 25.00;
#=GF TC   25.70 25.30;
#=GF NC   24.20 24.20;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR009299;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of several Gammaherpesvirus capsid
#=GF CC   proteins. The exact function of this family is unknown.
#=GF SQ   23
#=GS SCP_EHV2/15-178          AC Q66667.1
#=GS Q9YTK2_ATHV3/1-133       AC Q9YTK2.1
#=GS A0A1P7U1A6_EBVA8/1-174   AC A0A1P7U1A6.1
#=GS Q53CT7_9GAMA/1-169       AC Q53CT7.1
#=GS U5NIZ5_9GAMA/1-187       AC U5NIZ5.1
#=GS SCP_ALHV1/1-166          AC O36415.1
#=GS Q9IHZ9_9GAMA/1-169       AC Q9IHZ9.2
#=GS A1BM55_9GAMA/1-143       AC A1BM55.1
#=GS Q99CX7_BHV4/1-130        AC Q99CX7.1
#=GS A0A3S5HA21_9GAMA/24-164  AC A0A3S5HA21.1
#=GS SCP_HHV8P/1-170          AC Q2HR63.1
#=GS SCP_EBVB9/1-174          AC P14348.1
#=GS A0A060D3T3_9GAMA/4-192   AC A0A060D3T3.1
#=GS Q76RF4_HHV8/1-170        AC Q76RF4.1
#=GS A0A426CG75_9BACT/24-140  AC A0A426CG75.1
#=GS A0A0B5D3N7_9GAMA/1-169   AC A0A0B5D3N7.1
#=GS A0A2Z5U664_9GAMA/22-100  AC A0A2Z5U664.1
#=GS A0A0M4M4J5_9GAMA/1-140   AC A0A0M4M4J5.1
#=GS A0A2D0ZPL9_9GAMA/5-93    AC A0A2D0ZPL9.1
#=GS Q8BEN7_9GAMA/1-153       AC Q8BEN7.1
#=GS A0A3Q8J4G4_9GAMA/25-160  AC A0A3Q8J4G4.1
#=GS A0A1Z1NE41_9GAMA/1-128   AC A0A1Z1NE41.1
#=GS SCP_SHV21/1-106          AC Q01047.1
SCP_EHV2/15-178                     ..............................eg--YQPLRLPRVQGKLEE---INPIVaAEVAALER.RDRSDADYEKVKMLYVIYLRVHEIYDDQARIRLGVRRKKHLGDL...T......-------ASRGAGLR.SFE..ALSSMIPLPPETGE.F.DTGGTSSSv.rSASGAS...GGAA...................STAASGGSAS.AAASGASGGSASQSDVSSRS-RSQQAPGTKGKK........................................................................................................
Q9YTK2_ATHV3/1-133                  ...............................m----RVKEPIVQGKLEESDPTNELI.KMLDTLPK.NNMTGEEYALMRRNYLVFLIAQHNFDLFLETTHGIKRKKHIEGL...T.....aKLGSSTLSADGASSS.VVL..SAASVAT--PTSAS.V.LTGIPSLS...------...----...................----------.---------------------------------fsglttdthdskkkpkak......................................................................................
A0A1P7U1A6_EBVA8/1-174              .............................mar----RLPKPTLQGRLEADFPDSPLL.PKFQELNQ.NNLPNDVFREAQRSYLVFLTSQFCYEEYVQRTFGVPRRQRAID-...-......--KRQRASVAGAGAH.AHL..GGSSATPVQQAQAAaS.AGTGALAS..sAPSTAV...A---...................--QSATPSVS.SSISSLRAATSGATAAASAAAA-----------vdtgsggggqpqdtaprgark...................................................................................
Q53CT7_9GAMA/1-169                  ................................MSSLRVKEPIVQGRLEHDYPNHPLV.AEMNNLPQ.GDMSPAQYAIAKRNYLVFLTAKHHYDMYTQKKNGILRKDHLRGL...R......GK-----KDASSSIS.SVL..SGSGSAA--PSVAP.V.ASTLGSNSfttISSGPHsliGSIG...................PTPGGGGPGS.VASSGIGSTSLSPSDATTLDTRRSS--------qnkksk..................................................................................................
U5NIZ5_9GAMA/1-187                  ................................MAGFRVRDPLVQERLDQDYAQHPLV.IRMNTLDQ.GSMSDAQYLTQKRNYLVFLIAHHHYEAYLRQREGIQRRDHLQNL...R......AQKLPDRAGRGPGL-.GLS..SLA-GAPASLDSGA.Q.VTPPVSLS...--SGVP...ASLVstapaataasvkgsnaeiiTTLTSAGSHV.SSAPASATPQPTAVDSAASTAQDGRKTLTAK--rk......................................................................................................
SCP_ALHV1/1-166                     ................................MAHARPKLPRINLRLDAEYPNDPRV.QQLHLQIL.NNPNYANNVRAPLSYLVFLTAQEMYEVFVRQARGVNKKRSGG--...-......PEKPILPANPGAG--.---..---------PQNAP.G.CGGGGSGS...GGSGPP...GGSApqiqp........pnngvpSNQVSSNSGS.AAGSGSGSGASSNSGAGSGAGAGSSACPSSG--ag......................................................................................................
Q9IHZ9_9GAMA/1-169                  .............................mar----RLPKPTLQGRLEADFQDSPLL.PKFQELQQ.GNLPNDVFREAQRSYLAFLTAQSCYEEYVQRTFGVPRRQRGLDK...R......-----QRAGGAAQVShSHP..AGAASAA-QGQQAQ.P.VAGGGLAG...AAAAAS...APAA...................TPAVSSSISSlRAATSGAAASSAAVDTGSGGGAQPQDTSTRG--arkk....................................................................................................
A1BM55_9GAMA/1-143                  ................................MSYARPRLPRIHVRLEQDYPHDPRV.QQLQVQVL.NNPNYANNVRAPYTYLVFLTAQQTYDAYVRQARGVNKKKLPPSN...-......--KPPPQPNNQPN--.-NQ..QANNLPPVPPHPSG.A.GSGGG---...------...----...................----------.---------------------------------ppnapplpdkpdpqqgggannqsqgsgggnplp.......................................................................
Q99CX7_BHV4/1-130                   ................................MSQHRLRTPMIQGRLENDYPNNPLI.ATMTALPQ.NNMTSDQYAEVQRNYLVFLIAQQCYDRYLASKTGIRRKHHLQQL...L.....sHTQPPN-SSIFSSLS.SQ-..ASAPTAP-PPS--D.T.D-------...------...----...................----------.---------------------------------lsqtdsrpgsllsstpkrsskk..................................................................................
A0A3S5HA21_9GAMA/24-164             ............................itpt----RPPYPDLEDKIELDFPDSVIT.QKLKDIPK.GNQSDSEFKKTRRLYVVYLLASRCYEELRGRTAGIVRKKHYTDT...GlsrtmaSSKP--LDDRVPSVR.P-Q..AQFIMSTLPQVSTS.L.QTGGSS--...------...----...................----------.---------------------------------fsiipsvtplpddnsltdeds...................................................................................
SCP_HHV8P/1-170                     ................................MSNFKVRDPVIQERLDHDYAHHPLV.ARMNTLDQ.GNMSQAEYLVQKRHYLVFLIAHHYYEAYLRRMGGIQRRDHLQTL...R......DQKPRERADRVSAAS.AYD..AGTFTVPSRPGPAS.G.TTPGGQDS...--LGVS...GSSI...................TTLSSGPHSL.SPASDILTTLSSTTETAAPAVADARKPPSGKKK........................................................................................................
SCP_EBVB9/1-174                     .............................mar----RLPKPTLQGRLEADFPDSPLL.PKFQELNQ.NNLPNDVFREAQRSYLVFLTSQFCYEEYVQRTFGVPRRQRAID-...-......--KRQRASVAGAGAH.AHL..GGSSATPVQQAQAA.AsAGTGALAS...---SAP...-STA...................VAQSATPSVS.SSISSLRAATSGATAAASAAAA-----------vdtgsggggqphdtaprgark...................................................................................
A0A060D3T3_9GAMA/4-192              .............................sqf---VRLEMPEVQNRIEADFPQNEKV.VEMQTLLQ.NNPNFNLDNRTSKTYLVFLTAQENFEAFMNQARGIDRKLKGCNN...N......QKQPQQQ--------.---..--------------.-.--------...------...----...................----------.---------------------------------lqqqqqpsqqqqppapsqqdnnagnsnrckpsflpsapplpdnqqllgkggnkdskvyslgsldklpshinltladpsvagipipsdddssgsdygangqpvip
Q76RF4_HHV8/1-170                   ................................MSNFKVRDPVIQERLDHDYAHHPLV.ARMNTLDQ.GNMSQAEYLVQKRHYLVFLIAHHYYEAYLRRMGGIQRRDHLQTL...R......DQKPRERADRVSAAS.AYD..AGTFTVPSRPGPAS.G.TTPGGQDS...--LGVS...GSSI...................TTLSSGPHSL.SPASDILTTLSSTTETAAPAVADARKPPSGKKK........................................................................................................
A0A426CG75_9BACT/24-140             efdweqylreqdevllryiacyeklrnhpqrl-------------------------.--------.--------------------------------------------...-......--------DETARLM.GWDieEWSGETETNPETAK.T.DTPQSSSS..sSSSGAA...NDAA...................NAAASGPAA-.AADSPFASDATSDDDNSASAKED----------gdlipdm.................................................................................................
A0A0B5D3N7_9GAMA/1-169              ................................MSVLRVKEPVVQGRLDQDYPNHPLV.AEMNNLPQ.GDMSPAQYALAKRNYLVFLTAKRHYDVYLQKKNGILRKDHLRGL...R......GKK-EAN----SSIS.SAL..SGSSSAP--PSVAP.M.ASTLGSSSfttLSSGPHslmGSIA...................PTSGGGGPGS.VVTSGIGTASLTPSDA---TVLDTRRA------sqnkksk.................................................................................................
A0A2Z5U664_9GAMA/22-100             .............................ggv-----LKMPDVQDKLEDSDSNPEVA.KQLKNFQK.SSLNNEQLEQAKKLYVCYLRAQEIYEEQAQKRLGIRRKKHLADV...S......---------------.---..--------------.-.--------...------...----...................----------.---------------------------------kag.....................................................................................................
A0A0M4M4J5_9GAMA/1-140              ................................MSREQLRDPIIQDKLEDLNIQQHLI.KQVQALPK.SNKTDQEYAKAQRLYLTFLLTQQFFDNITNQNLGVRRKKHIEAY...R.....kLQQGSQQIPQSISSS.PFV..QAAIYNG-------.-.---EPPK-...----ST...GSSI...................STLFSEDHST.ES-------------------------------gdlvakrttsgskk..........................................................................................
A0A2D0ZPL9_9GAMA/5-93               ..........................aehylv-------FPVVQGRLDNDFPGHPLV.QHLNNMQQ.GVLNDEQFVLAKQSFLTFLIAQAAYDGYLDRNAGIRRNVH----...-......---------------.---..--------------.-.--------...------...----...................----------.---------------------------------dysslpggsggsgippp.......................................................................................
Q8BEN7_9GAMA/1-153                  ..............................md--GRRPPRPNVQSRLEADFPNHHLQ.TKFMELVQ.GNLSDKEYREAQAGYLTFLIAEHCYENYVQRMHGVLRRQVAQ--...-......-------ARRGAA--.---..STSSHIGSIASAAT.G.TASSVQPS...-ASSVP...ATTPspa.............rtiPPPVSQPPIT.LSVSQASGTDGGAGDTGS---------------rpgrrk..................................................................................................
A0A3Q8J4G4_9GAMA/25-160             .............................pst----RPPSPRLEDKIELDFPESTIP.ERLKEIPK.GNQSDTEYKRTRRLYLIYILASRCFEELMSKKTGIIRKQHYADMlqsK.....qNTTPHLSSKRGIPSS.SRT..SGHLFFPTSLSAVP.S.DLQTGSSS...SSLT--...----...................----------.---------------------------------tsfpplpeds..............................................................................................
A0A1Z1NE41_9GAMA/1-128              ............................matg-----LKLPIVQHRLEHDYPNSSLV.QMLQTLDHeKDVTNEEFAVAQKHYLVFLTCQMLYNKYLVAQNGVRRRNHIQNL...I......GKQ--ATVEGFGGLA.AAD..GTS--VP-------.-.--------...------...----...................----------.---------------------------------ktrpagndaklassqgapaaigaapacdl...........................................................................
SCP_SHV21/1-106                     ................................MHRLRVTDPVVQGKLEESDSTHELV.KRLEILPQ.NNMTPEEYTLMKRNYLVFLIAQYNFDQYIETTHGIKRKKHIEGL...K.....aNLKPSALSADSASLS.GLL..STSLTTPS------.-.--------...------...----...................----------.---------------------------------l.......................................................................................................
#=GC seq_cons                       ....................................RlcpPhlQsRLEpDaPspsLl.tchpsLsp.sNhosspatpspRsYLVFLhApppY-tYlppptGlpR+cHhtsh...t........p....sstsuuhp.uh...usu.hss...t.us...sss.s..u...............................................................................hs......................................................................................................
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