#=GF ID Ilar_coat
#=GF AC PF01787.20
#=GF DE Ilarvirus coat protein
#=GF AU Bashton M;0000-0002-6847-1525
#=GF AU Bateman A;0000-0002-6982-4660
#=GF SE Pfam-B_1131 (release 4.2)
#=GF GA 22.00 22.00;
#=GF TC 22.80 22.10;
#=GF NC 21.90 21.00;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP Family
#=GF CL CL0055
#=GF RN [1]
#=GF RM 7730792
#=GF RT Prunus necrotic ringspot ilarvirus: nucleotide sequence of RNA3
#=GF RT and the relationship to other ilarviruses based on coat protein
#=GF RT comparison.
#=GF RA Guo D, Maiss E, Adam G, Casper R;
#=GF RL J Gen Virol 1995;76:1073-1079.
#=GF RN [2]
#=GF RM 8178476
#=GF RT The complete nucleotide sequence of prune dwarf ilarvirus RNA 3:
#=GF RT implications for coat protein activation of genome replication
#=GF RT in ilarviruses.
#=GF RA Bachman EJ, Scott SW, Xin G, Vance VB;
#=GF RL Virology 1994;201:127-131.
#=GF DR INTERPRO; IPR002681;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC This family consists of various coat proteins from the
#=GF CC ilarviruses part of the Bromoviridae, members include apple
#=GF CC mosaic virus and prune dwarf virus. The ilarvirus coat protein
#=GF CC is required to initiate replication of the viral genome in host
#=GF CC plants [1]. Members of the Bromoviridae have a positive stand
#=GF CC ssRNA genome with no DNA stage in there replication.
#=GF SQ 17
#=GS D6CHU3_9BROM/12-216 AC D6CHU3.1
#=GS A0A386QVH1_9BROM/2-203 AC A0A386QVH1.1
#=GS Q5UKX3_9BROM/12-211 AC Q5UKX3.1
#=GS Q84692_9BROM/1-204 AC Q84692.1
#=GS Q6JE39_9BROM/39-245 AC Q6JE39.1
#=GS Q99HQ7_9BROM/20-212 AC Q99HQ7.1
#=GS CAPSD_AMVLE/5-207 AC P03591.2
#=GS Q997A1_9BROM/5-215 AC Q997A1.1
#=GS Q80852_9BROM/16-219 AC Q80852.1
#=GS Q98602_9BROM/12-221 AC Q98602.1
#=GS Q2QF32_9BROM/41-245 AC Q2QF32.1
#=GS CAPSD_TOBSV/41-237 AC P03598.1
#=GS Q66106_9BROM/22-214 AC Q66106.1
#=GS A0A2P1H6G5_9BROM/24-224 AC A0A2P1H6G5.1
#=GS Q65299_9BROM/21-217 AC Q65299.1
#=GS Q6URK1_9BROM/29-221 AC Q6URK1.1
#=GS Q65004_9BROM/12-217 AC Q65004.1
D6CHU3_9BROM/12-216 ..gg--CVKCKKCFPTGAAPASERARQRARN-NPN....RVVTSRVGS...SSKGANAP--TSWTVNGPNTEPiv...prgTVLRSYTDVVA.SAPGKF.LTIDFSERFPNLL--GHKVRILSILLRVNAfHSNGWVGLV..EDYDVS...SPTGPDPMRRK...GFMANQARGWQWMAP....SGLEYDDF.AKKHRIVLEFKTE....FAAEQKVLTRDLYVVTTELPKVTIPGDILFVDE......
A0A386QVH1_9BROM/2-203 stnt----QQKKTRQNKRSTQFGQNRAKQRAQSTG....ESSTVPNFG...-------TLRLEWVRRGPGDLDilq.fpyqWVAKAESSLKA.TSNDIW.YIIDLHEYVKDMM--EFPTSVKGFVFLFEA.NLSGQACLV..TKKTGS...FKDAFSSLNAF...KFEKGCHTAVQLLAP....SILTFATFsAGEVALVFKFEGT....LTAGAEFMTRKVWGQSSMLPKVEINKNLLR---gq....
Q5UKX3_9BROM/12-211 ....PCGVVHRRGRPTQRSQNFARRGGMAPRPNTA....NNLAMPTAV...---------RTEWEINGPNTQVrrf..pglVTVSKGVAIRS.TGAGTY.WGFAISTAFHNLM--GQRVLCDALVMRFISdHSGGVVGVV..RGYNPD...HPTAPNALTRR...RFHKGVATGLQFLAP....TNQVVDEI.ADDIYIVFQFDTA....FTANAVLLTRDRYLQHNAVPRVEIPADVLRTE-a.....
Q84692_9BROM/1-204 ...m-SGKAIKSGKPTTRSQSFALARKNNNTTPPA....GFVKKQFPS...----GSSKSISEWMLHGPNVPVksf..sgmISRTENLTVNS.TASGVY.YTMKVRELFKDF---AVDTKVYGIVFRYCLdVSNGVYGLI..KGFDVN...APVAPNPLQRR...KFTAKQASGVQILAP....TGMTVGDI.PDDLWFVIKYDNA....FQPNVPVWFCTQYLQHSMPKRVEVPDSVLYAE-r.....
Q6JE39_9BROM/39-245 ...r-KRANVRVPPGTTLNPKFFAQFSGYNAEECDl..lDDVINAIPSvsvSAASQKRVTEAQLVVGDPLKGIq.....gpCTHMGDATITA.RTGGVRgFYMALDALLTGIP---DATRLKSLVMHITFlSDGGVLGL-..NTERSD...QYVEPNPLKRK...RFEKESPFWAQILFP....DNVKLSDV.-KNYAIMIKFDSD....YSANTPLYTRECWVNHYQLPSAVIPEEA-----far...
Q99HQ7_9BROM/20-212 ..ap--PNRGGRRKPTARSRNWAVQQ----RSQPP....NMVVGSMPI...NLPTWKSFPGEQWH--------........-EVSGFEFPAS.WISGDI.AYASMRTELGKIKALHDSTKVYSVMYGFIT.KAGWLCRLK..DDFDPS...NATGPNAPNRT...RVKAGKYSAKQLVFP....PGTTVAEV.KSAYNFVWQFDSAp..aSGTANVVKVVKFYVSTTPLPGVKPPANFLVCEE......
CAPSD_AMVLE/5-207 qkka----GGKAGKPTKRSQNYAALRKAQLPKPP-....---ALKVPVv.kPTNTILPQTGCVWQ--------........-SLGTPLSLSSfNGLGAR.FLYSFLKDFVGPR-ILEEDLIYRMVFSITP.SHAGTFCLT..DDVTTEdgrAVAHGNPMQEFphgAFHANEKFGFELVFTapthAGMQNQNF.KHSYAVALCLDFDaqpeGSKNPSFRFNEVWVERKAFPRAG----------plrsli
Q997A1_9BROM/5-215 ....NAPQNKGKKKQNARTTQFAQRRAAAARGEIE....TSSRNITAR..sGGPPVPRSIRTEWELVGPSVGArliqgphnEVVKGEAVASS.TTAGQY.FSIQISTYLEKFL--EMGVQLNSMTVLCASlQGSGIVCLT..HKFTTC...EA-AISTLSGL...RFREGRRLGFQVLPP....SDTVAGDV.ASNVRLVFKFDKA....FEANAPLIERKVWVSTSRLPEIMIPANLLVPDE......
Q80852_9BROM/16-219 ....PCLRTRANGGQVSNRQSRNVRRAAAFRNSQQ....TSARIPVPV...PVIPVSRPNGPKASLKLPNNQV........WVYKVASELAA.KTSDAN.DAISLTTMLSGISDVKPETKLYRLVFGFVA.ESDGSFGVVedENVSGN...VVPDPPVVGRA...GFKKHTNKCRDVNL-....EGKTPDEL.-KNMAVVWCLDEN....RKVAKRIAFTHFWFAISRPSPLMPPENILVD--gn....
Q98602_9BROM/12-221 ..gg--CRSCKRCHPNDALVPLRAQQRAANNPNRN...rNPNRVSSGI..gPAVRPQPVVKTTWTVRGPNVPPri...pkgYVAHNHREVTT.TEAVKY.LSIDFTTTLPQLM--GQNLTLLTVIVRMNSmSSNGWIGMV..EDYKVD...QPDGPNALSRK...GFLKDQPRGWQFEPP....SDLDFDTF.ARTHRVVIEFKTE....VPAGAKVLVRDLYVVVSDLPRVQIPTDVLLVDE......
Q2QF32_9BROM/41-245 .aas---NCTRCNPAVSNRQRRNARRAANFRNQRKfdglRALQAPVPL...PVVPVPQP-ATQRNLRLPNGQV........WVTRKPTDWAA.KVNDAN.DAMLLKTIFDGITEIKPDTKVFRVLIGFVA.MSDGTFGLV..DGVTGD...TVPELPIIGRW...SFQRDVYRSRDIGL-....DGQPADQL.-SEKAVVWCLNTN....KRAEKRVRLADFWVAIAKPKPLMPPPDFLVEDN......
CAPSD_TOBSV/41-237 ....NCPAHNTVN-TVSRRQRRNAARAAAYRNA--....-NARVPLPL...PVVSVSRP-QAKASLRLPNNQV........WVTRKASEWSA.KTVDTN.DAIPFKTIVEGIPEIGAETKFFRLLIGFVA.VSDGTFGMV..DGVTGD...VIPDPPVVGRL...GFKKNTYRSRDFDL-....GGKLLNQL.-DDRAVVWCLDER....RREAKRVQLAGYWIAISKPAPLMPPEDFLVNQD......
Q66106_9BROM/22-214 ..pv--ANARGRRRPTNRSRNWAQGQ----RSQPQ....RMVVGSMPI...DTITWKSFPGEQWH--------........-EFSGFSFPDA.WGSAKI.AYASMRTELGKIKSLHHTTKVYSVMYGFTC.KADGYAGFM..DNFDSA...NATGPVAPNRI...RVKAAKYCARQLVLP....PGSTVADL.RDNYNFVWEFDAAp..aAGTANIISVTKFYVSTVPLPGIKPPPNFLVCE-m.....
A0A2P1H6G5_9BROM/24-224 ...nNCSRHGGVNS-PSNRQRRNARRAAQYRNM-Q....RVATQSVPL...PVPVAPVIRSRRVNFRLPNSQV........WVTRKASEWAA.KTTDTN.DAISLRTILNGIPEISDETKVFRLLIGFVA.VSDGTFGLV..DGVTGD...VIPDPPVVGRL...GFQKNKYRCRDFDL-....EGKTPPNL.-ADKAIVWCLDSG....RRDAKRVSLANYWLAISRPTPLMPPSDFLVE--sd....
Q65299_9BROM/21-217 ...p-TRGRGGRRQPTARSRQWAQGQANARRSQPQ....ALMIGSVPT...SLPTWKSFPGEQWH--------........-EVSGYSFPNS.WGSGTL.AWLTMANELNKIKTLHDTTKVYSVMLGFTC.NYDGYAGFV..EGFSTS...NQIHPIAPDRI...RVKKGKYGARQQVFP....TGTTVSEV.RSNWTFVWNFDAAp..pTGSKDAITVTKFYIATSPLPGVKPPSNFLVVEE......
Q6URK1_9BROM/29-221 ..tn--CARCMRNGGVSNRQRRNARRAANFRNQR-....-------PV...PVVPVSAP-TTSKSLKLPGNQV........WVTRKPSDWAA.KTVDTN.DAITLKTIFNGIPEINDDTKIFRVLIGFVA.VSDGTFGLV..DGVVGG...SIPDPPIIGRL...GFKKNTYRSRDFRF-....DGKLTPQV.-ADKAIVWCLDSN....RRDAKRVRLADFWIAISRPNPLMPPDEFLSGD-s.....
Q65004_9BROM/12-217 ..gs--CAGCKWCHSTNRF---APPKRAVAR-Q-A....NPNKGKIPV...SVSRAGRSIRRGGQLGRLGARMlsrkflkgHRVLSSREVTA.TVEGRF.VNIDFADVFRDLL--EKDLKVYTFIIRVNSlSSNGWIGLV..EDYDES...NPKGPNPMDRK...GFKKDQPRGGMWEAP....PNTTFDDF.VRKFRLVLEFKTN....FAAGAKVFMRDLYVITSELPPVQIPTNVLLIDE......
#=GC seq_cons ...s..stpstpspssspppphstt+tsshRsp.t....psstsshPl...sssshtt..tsphplthPss.s........hssps.sphsu.pssssh.hshshpshhsslh..tpsT+lasllhtasu.pusGhhGLV..-shsss...ssssPsslsRh...tFc+sphpuhphhhP....sGpssspl..sshslVapaDss....hpssstlhhpchalspothPtlh.PsshLhs-.......
//
