#=GF ID   LA-virus_coat
#=GF AC   PF09220.14
#=GF DE   L-A virus, major coat protein
#=GF AU   Sammut SJ;0000-0003-4472-904X
#=GF SE   pdb_1m1c
#=GF GA   25.00 25.00;
#=GF TC   26.50 25.20;
#=GF NC   24.40 23.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   12244300
#=GF RT   L-A virus at 3.4 A resolution reveals particle architecture and
#=GF RT   mRNA decapping mechanism. 
#=GF RA   Naitow H, Tang J, Canady M, Wickner RB, Johnson JE; 
#=GF RL   Nat Struct Biol. 2002;9:725-728.
#=GF DR   INTERPRO; IPR015302;
#=GF DR   SCOP; 1m1c; fa;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   Members of this family form the major coat protein of the
#=GF CC   Saccharomyces cerevisiae L-A virus [1].
#=GF SQ   32
#=GS A0A2H5CRU2_9VIRU/40-437   AC A0A2H5CRU2.1
#=GS A0A4T0X0S8_9ASCO/263-401  AC A0A4T0X0S8.1
#=GS B6QWN5_TALMQ/1-374        AC B6QWN5.1
#=GS A0A1U8ACI4_NELNU/1-108    AC A0A1U8ACI4.1
#=GS A0A2Z4PGH0_9VIRU/9-439    AC A0A2Z4PGH0.1
#=GS G8BKQ9_CANPC/7-435        AC G8BKQ9.1
#=GS A3LZ29_PICST/8-422        AC A3LZ29.2
#=GS A0A193GXK6_9VIRU/37-437   AC A0A193GXK6.2
#=GS A0A193GXV6_9VIRU/37-437   AC A0A193GXV6.2
#=GS A0A0U4DBD4_9VIRU/17-439   AC A0A0U4DBD4.1
#=GS M4MKZ4_9VIRU/51-366       AC M4MKZ4.1
#=GS YJ61_SCHPO/167-273        AC U3H0A9.1
#=GS GAG_SCVLB/20-382          AC Q87026.1
#=GS A3LZ28_PICST/83-382       AC A3LZ28.2
#=GS RDRP_SCVLA/1-436          AC Q87022.2
#=GS A0A0S3Q2B6_9VIRU/28-438   AC A0A0S3Q2B6.1
#=GS A0A4T0X0R6_9ASCO/242-453  AC A0A4T0X0R6.1
#=GS B5RSZ7_DEBHA/1-436        AC B5RSZ7.1
#=GS A0A0S3Q2C9_9VIRU/7-263    AC A0A0S3Q2C9.1
#=GS E5KIN6_9VIRU/1-436        AC E5KIN6.1
#=GS RDRP_SCVLB/21-382         AC P23172.2
#=GS A0A833RG21_9POAL/35-437   AC A0A833RG21.1
#=GS A0A1L3KFC1_9VIRU/2-437    AC A0A1L3KFC1.1
#=GS A0A2J6JN16_LACSA/35-194   AC A0A2J6JN16.1
#=GS A0A1L3KEZ0_9VIRU/36-436   AC A0A1L3KEZ0.1
#=GS A7XMH5_9VIRU/19-448       AC A7XMH5.1
#=GS A0A0N9M6A6_9VIRU/40-169   AC A0A0N9M6A6.1
#=GS M4MG99_9VIRU/52-366       AC M4MG99.1
#=GS A0A2H5CRV4_9VIRU/40-437   AC A0A2H5CRV4.1
#=GS H9XW59_9VIRU/255-436      AC H9XW59.1
#=GS GAG_SCVLA/1-436           AC P32503.1
#=GS A0A0N9MPY0_9VIRU/40-170   AC A0A0N9MPY0.1
A0A2H5CRU2_9VIRU/40-437              .......................gdaskssard-------------------------------------------------.....IYQAMTPLGMLETAFE.SMGSNYDGLTKNYLTPEGAINFSNIHDTLKQSGGMNNQELSTFMAF.CQTISWHDNHVTLLFNMLRYVILMKFK..EC.KQN.L..NGAL..GRFQEDFLEINMDQY-..W..PDSYP..R.DCA..FdSWP...VDV.TEEGAIALEHLSTDQTRN.TGPAI.DLRGLTSTESIFVI.FMLHKWTRSSRFKIDVSTKKLTDTLQFRGVDVSA.LYD..SYWKQDTVMPA-..-LLSSNAAWHALAKYVTQNRLFDQFSSALYLVTALTYQYVPETAEGVAWLSLNWRVVLPEFTSIRGKFA.FFNTGDAAFLS...QRSLDEWEYIGGKT.EKINLMS..LTFCQA...FY.AGIA.L....RTTRRGLEMMPADIYG.T.DAEFWNAENFVSAAVAEFARIKVPMSGTPGLYITCDERLD-i..................................................................
A0A4T0X0S8_9ASCO/263-401             ..................eqenvkinyltisrf-------------------------------------------------.....----------------.----------------------------------------------.---------------------------..--.---.-..----..----------------..-..-----..-.---..-.---...---.------------------.-----.--------------.----------------------------------.---..------------..-----------ISKLVSDNRLHADFHIAYSMVCQIFMGPSPRTAESAALLAKPMTVKLPCASFCLGADPtFLLSGTPYYATpyvAKTIYEW---MSKT.ALVILHS..IIINES...AY.IQLA.-....----------------.-.-----------------------------------------alqraseiaeinifnfaqkss..............................................
B6QWN5_TALMQ/1-374                   .................................-------------------------------------------------.....--------------MS.EAESSLDGLNKKYLTLDGAISTDNVFAELKNLAGFQTSVISGHAYN.VAGWKWYDNHVSLLVNLLRFYILSDLH..ER.TSL.T..TGKY..PIYDDGNVIIDLNPTL..E..FDNKE..-.-VD..W.TWP...GRR.MDESYPFWSPIAEFLPVT.DDPHI.DLRPLTEEEAKIVL.MMTGEWKPQTNYKLDFYTPRLADKIMYRFRSPIS.SLN..DWLDPEDVGPVY..FLPKPKVIWNALRKYVTYNNLYNQFYTATNIIAQVMLTVFPDTAEGMTWLTHVPEVHLPKFGSVRGWYP.FLNSGEAAFIQ...AKALEDWAALIAEP.ELLFTYA..MMLAST...LN.IGLA.V....RDAKASRLIGEVKSTF.D.DTLFLTPETFFASAVSLATGLDAPLNGMADVYVFYPELVNV...................................................................
A0A1U8ACI4_NELNU/1-108               ..............................mqf-------------------------------------------------.....----------------.----------------------------------------------.-------------------TFMLKVME..KK.KSL.S.wFGVF..PVYYDGVVRIDPNDAY..CndLEYDA..-.AAR..Q.HLP...GGP.ARVNYPVFEYCNTHQAPV.GREAI.DLRKLTRHGGFIVL.MMTGAWKRSS------------------------.---..------------..---------------------------------------------------------------------.-----------...--------------.-------..------...--.----.-....----------------.-.-----------------------------------------rwmdp..............................................................
A0A2Z4PGH0_9VIRU/9-439               ftefdspgvdfnfdsdlkthtymgcglrvydgh-----------------------------------------INQSRHFH.....AFQPMTPLGYYDCEVT.GGGSSLDGITKNYLTPEGTVNLVTVADTLKGSSGLQTAMLSAHVSH.MQHWSWADNHVGLLFNMFRYVLIEKIR..EC.AGS.L..DGKL..GLYEDGHVGIDMDQF-..-..WEDEYceD.GGA..R.KWP...GGD.VDASYPDYLRLTNTTPST.GDWAL.DLRGMNARDARFVL.LMMGAWKRRSRLRLDCTTKKLCDCVLYRSSVEVA.NIT..DWIVDKEKGIVP..PTLSSSEAWQALKFYVTQNRLFDHFSATLYIIATMMYQFVPATAEATNWLRLKWTVNIPTFRSVRGRYE.FLNEGEPALLS...HRCLNEWGYINGKM.EKVNLMA..LVFSQA...YH.TGLA.V....RGVRKGLELHPDDIFS.S.EIDFYTSANFISAAASEATRTDTPLPGMVGIHFV-------vnddfdv............................................................
G8BKQ9_CANPC/7-435                   ..................qrltvsplgldeaie---------------------TS-GTTSLLSKINMTIGYSGKCFERSFT.....AEQRYSWLGCTKGDQL.DGETSLAGLATKYVTPSGNINISQVMVELQSRVALSQEESINHETQ.SMLWEWYDNHVALLFNLIRLYVMAELK..ES.GGLkT..TGTF..PKYDDGHVQIDPNFRL..L..KPDEE..-.-IS..W.SWP...GGK.ESENYPRWTSTQSNLPEH.NVPHI.DLRALSRAEAIVVL.LATSKWRRQSNFRIDFDYPKLADQLVYRYTRNIQ.ELD..DWISGKS-ERDF..PLSDKRVIWSALRKYVVANNLYNQFYSAASVLSQLLLTVIPDSAEGQVWLTEIVEVGLPRFGSVRGWYP.FLTNGEAALIQ...ETALEDWAYLKANP.GLLYSTA..ISVATL...LP.YGIA.A....RNNNPRNRRQNIVLER.D.RNLIKQPETFVAACLSLASGLNIPLNGSENAYVFYPGI---ts.................................................................
A3LZ29_PICST/8-422                   .........cysptqehghtkvyleillraics----------------------------------------DSIQSKTFE.....AVQSFTWLGPVRSKFA.PSESSFDGLSKLFLTIDSGLCLDNIKLQAKILTGLQMSSIDDHFDE.FSSTNWYDNHVSLLINILRLYILLDLA..EK.KGL.Q..TGRF..PPLNNKTYEVDVNNIL..P..FPDTP..-.-VK..F.SWP...GGS.EKKGYPNFVYANDFFPTS.SSPYI.DLRGLDIDEARIVL.FMTGEWKAQTNFKVDFNSSKLCNEIFYRYRKPIN.ELD..LWYNS----DDF..GMPMSHVVLSALRKYVVNNSLYYQFHIASDLISQLMLTIFPENVEGMTWLQHTAEINLPIFGSIRGRYP.FLCQGETAIAR...PDHIKEWALFIANP.YLLFSRS..LVLATC...FN.IGLA.A....RDFRIRNSLSS-KETI.E.-EFFLDSESFYASAISLATGSEFPKNEMTSACLFYPSLLE-t..................................................................
A0A193GXK6_9VIRU/37-437              ......................vttgdatkssa-----------------------------------------------RD.....IYQAMTPLGMLDAAFE.SMGSNYDGLTKNYLTPEGAINFSNIHDTLKQSGGMNNQDLSTFMAF.CQTISWHDNHVTLLFNMLRYVILMKFK..EC.KQN.L..NGAL..GRFQEDFLEINMDQY-..W..PDSYP..R.DCA..FdSWP...VDV.TEDGAIALEHLTTDQTRN.IGPAI.DLRGLTSAESIFVI.FMLHKWTRSSRFKLDVSTKLLTNTLQFRGVDVSA.LYD..SYWKEETVMPA-..-LLSSNAAWHALAKYVTQNRLFDQFSSALYLVTALTYQYVPETAEGVSWLSLNWRVVLPEFTSIRGKFA.FFNTGDAAFLS...QRSLDEWEYIGGKM.EKINLMS..LTFCQA...FY.AGIA.L....RTTRRGLEMMPADIYG.T.DAEFWNAENFVSAAVAEFARIKVPMSGTPGLYITCDERLD-i..................................................................
A0A193GXV6_9VIRU/37-437              ......................vttgdatkssa-----------------------------------------------RD.....IYQAMTPLGMLDAAFE.SMGSNYDGLTKNYLTPEGAINFSNIHDTLKQSGGMNNQDLSTFMAF.CQTISWHDNHVTLLFNMLRYVILMKFK..EC.KQN.L..NGAL..GRFQEDFLEINMDQY-..W..PDSYP..R.DCA..FdSWP...VDV.TEDGAIALEHLTTDQTRN.IGPAI.DLRGLTSAESIFVI.FMLHKWTRSSRFKLDVSTKLLTNTLQFRGVDVSA.LYD..SYWKEETVMPA-..-LLSSNAAWHALAKYVTQNRLFDQFSSALYLVTALTYQYVPETAEGVSWLSLNWRVVLPEFTSIRGKFA.FFNTGDAAFLS...QRSLDEWEYIGGKM.EKINLMS..LTFCQA...FY.AGIA.L....RTTRRGLEMMPADIYG.T.DAEFWNAENFVSAAVAEFARIKVPMSGTPGLYITCDERLD-i..................................................................
A0A0U4DBD4_9VIRU/17-439              ......vdfnfdsdlkthtymgcglrvydghid-------------------------------------------QNRHFH.....SFQPMTPLGHYDCEFT.GGSTSLDGLTKNYLTPEGTVDLTALADTLKGSAGLQTALLSAHVSH.MLHWSWADNHVALLFNMFRYVMIERIR..EA.AGS.L..VGKL..GLYEDGHIGIDMDQFW..K..ESYPE..D.GGD..R.CWP...GGG.DDLSYPDYIRLTATTPST.GDWAL.DLRGMSARDARFVL.LMLGSWKRRSRLRLDCSTPRLCDNVLYRSSVEVT.NIT..DWISDKDKQAPP..RTLSSSEAWRALKLYVTQNRLYDHFSATLYTISTMMYQFVPATAEATNWLSLHWTVNIPTFRAVRGRYE.FLNEGEAALLS...HRSLNEWGYINGKL.EKVNLMA..LVFSQA...YH.TGLA.V....RGVRKGLELHPNDVFA.S.EIDFYTSANFISAAASEATRTDTPLPGMVGIHF--------vtdddfdm...........................................................
M4MKZ4_9VIRU/51-366                  ..........galftnvlspfgvfnaevvrdpp-------------------------------------------------.....----------------.----IFDGINARFFNDYGEIDERAIAETLRLKGTYRPNVIAELAPT.IASCN-SENHVSVLVNLLRFSIIKRSD..PK.DFK.F..VNDD..LFYDDGHLAVSYKNYL..K..REFNE..-.ELV..F.IFR...E--.G----IQIERFSESTVVG.DDFYCpNIENLSAREFNILL.TLLGSIKCDYPLRLAFSTPRLVDKLVLPLTTKHA.SYY..EVVN-DFTANE-..-------VDQIIRKYIFANRVETAFDLAYLIVVTAMFAPLPRAIEANGWVSPVNLIKLPNVGSVRGLMP.EMTGGQ-----...--------------.-------..------...--.----.-....----------------.-.-----------------------------------------plskspqkaltwlnykqspgriaihaiaaceayytg...............................
YJ61_SCHPO/167-273                   .lnetfnsnsnylkvgntidehflkelvngtqd-------------------------------------------------.....----------------.----------------------------------------------.---------------------------..--.---.-..----..----------------..-..-----..-.---..-.---...---.------------------.-----.--------------.----------------------------------.---..------------..-------IENIIVRLVKDNRLFTQFDIAYGMVAQVFMQLKPFLVEGTYWIAEPLLMNIPELKTQRGRYP.SLLDGH-----...--------------.-------..------...--.----.-....----------------.-.-----------------------------------------lwkltns............................................................
GAG_SCVLB/20-382                     ....................ninssrvqygfna---------------------------------RIDMQYEDDSGTRKGSrpnafMSNTVAFIGNYEGIIV.DDIPILDGLRADIFDTHGDLDMGLVEDALSKSTMIRRNVPTYTAYA.-SELLYKRNLTSLFYNMLRLYYIKKWG..S-.IKY.E..K-DA..IFYDNGHACL-LNRQL..F..PKSRD..A.SLEssL.SLP...EAE.----IAMLDP-GLEFPEE.DVPAI.LWHGRVSSRATCILgQACSEFAPLAPFSIAHYSPQLTRKLFVNAPAGIE.PSS..---------GRY..THED---VKDAITILVSANQAYTDFEAAYLMLAQTLVSPVPRTAEASAWFINAGMVNMPTLSCANGYYP.ALTNVNPYHRL...DTWKDTLNHWVAYP.DMLFYHSvaMIESCY...VE.LG--.-....----------------.-.-----------------------------------------nvarvsdsdainkytf...................................................
A3LZ28_PICST/83-382                  ...........................ersesq-------------------------------------------------.....----------------.----------------------------------------------.----------HALLVNLIRLYHLTLLN..EE.GDL.R..NVKN..IRYDDGHSTAHTSWPR..E..----I..-.GEK..W.NWP...NSS.SSEEYPEFISLDETSEQQsHSMVL.DFTGLSDEEITIMW.RMCSRWCQRTNFKLDFELPKLASRIYCKSSRTMP.NFL..E-VEEVRTRNPK..RIPKSSQIWDLIVKYVRRNRLESQARSSCLVISHIMLSLLPDTLEGLSFLSERVEIHLPSLFSLRQ---.-LSSDKE--EN...ERMLNDWRQIEKYP.AIIFNYG..LFVANC...FP.IGLM.K....REL----FPTEG----.-.----VHEKDLVNAMVSYATGIGVASFDNSNLFVSYPNLVD-t..................................................................
RDRP_SCVLA/1-436                     .................................MLRFVTK-NSQDKSSDLFSICSDRGTFVAHNRVRTDFKFDNLVFNRVYG.....VSQKFTLVGNPTVCFN.EGSSYLEGIAKKYLTLDGGLAIDNVLNELRSTCGIPGNAVASHAYN.ITSWRWYDNHVALLMNMLRAYHLQVLT..EQ.GQY.S..AGDI..PMYHDGHVKIKLPVT-..-..IDDTA..G.PTQ..F.AWP...SDR.STDSYPDWAQFSESFPSI.DVPYL.DVRPLTVTEVNFVL.MMMSKWHRRTNLAIDYEAPQLADKFAYRHALTVQ.DAD..EWIEGDRTDDQF..RPPSSKVMLSALRKYVNHNRLYNQFYTAAQLLAQIMMKPVPNCAEGYAWLMHDALVNIPKFGSIRGRYP.FLLSGDAALIQ...ATALEDWSAIMAKP.ELVFTYA..MQVSVA...LN.TGLY.L....RRVKKTGFGTTIDDSY.E.DGAFLQPETFVQAALACCTGQDAPLNGMSDVYVTYPDLLEF...................................................................
A0A0S3Q2B6_9VIRU/28-438              ................tllkgnlavdvngdkni---------------------------------------------KKLT.....MAQSMTYLGRSTVVMG.SGSSDLEGINKFCLTPEGNLNIVNVLATVAKESGMPLNEQHHKLEY.MKTMSWADNHVSLLVNLMRFAILLELS..ES.SGG.VglKGAL..PKYNDGVVAVNRTA-L..L..PEEYP..V.GGD..M.TWF...TRF.SRQDMPDVVRVEEYCAPQ.SDVCL.DLRSLTETEAVIVL.LCCGKWYRQSRFLLDFDCPILTSKLYYRFDKRID.IGN..FDQTSDGRVTQP..KLPKAKEVWRTMSRYLAANRLYGQYSTALCLVAQTMCQFIPATAEGNVWLTQQRVIHLPALKSVRGALP.FINEDEPALVS...QRSLNEWGAFSTDV.TKYNLLG..NILVQA...VQ.TGIA.V....RALRFRNEDNP-EDLY.RtYDTVTNPAVMYGALCSEALRCPVPLAGMSGVFVEF------elpde..............................................................
A0A4T0X0R6_9ASCO/242-453             .sreaciapdqkimidshkklpqqgdahishlt-------------------------------------------------.....----------------.----------------------------------------------.---------------------------..--.---.-..----..----------------..-..-----..-.---..-.---...---.------------------.-----.--------------.----------------------------------.---..------------..-------IYCLISNLVNDNHLHADFHIAYSMVCQIFMGPSPRTVESAAWLLKPMTVMLPRARFCLGTDPvYLLSGTPYYAT...PYATKTFSEWMNAT.SLVILHS..IIINES...AY.IQLAaL....QRVS------------.-.-----------------------------------------kfaeikisnftqqssnykantyagllsdlclvamrydveikfpyktraglkrsqnltyfenvdvpvs
B5RSZ7_DEBHA/1-436                   .................................MLKFVNQLNSKGKNNLYHSQQTD-GTASTMSRIRVDFKYDDLTFSRSLT.....ASQDYTWVGKVLTSMS.EVESSLDGLNKKYLTLDGAISTDNVFQELKNSAGFQSNIIAGHAYN.VAGWRWYDNHVALLVNLLRFYILSDLD..ER.SKL.S..TGKF..PVYDDGHVIIDLNDTL..L..LEDKA..-.-VD..W.TWP...GRR.ADESYPYWNPMTEFLPVT.DDPHI.DLRPLTEEEAKVVL.MMTGEWKPQTNYKLDFYTPRLAEKIMYRYRNPIS.SLN..EWLDAEGTAPTY..YLPKSRVIWSALRKYVTHNNLYNQFYTATNIVAQVMLTVYPDTAEGMTWLTHVPEVHLPKFGSVRGRYP.FLNSGEAAFIQ...AKALEDWAALIAKP.ELLFTYG..MMLAST...LN.IGLA.V....RDAKASLLIGEDKSSF.D.DTLFLTPETFFASAVSLATGLDAPLNGMGDVYVFYPELVNI...................................................................
A0A0S3Q2C9_9VIRU/7-263               ..............................dtc-------------------------------------------------.....----------------.----------------------------------------------.------VDNVTSLLYNLLRMYYIL---..EN.KNL.S..VKKT.dSYYDDGHLSVDMGDVF..G..VGERS..KrITD..V.RFN...PCR.AH----RYDAETYFLNFS.GEPVL.HMANANALSSGILA.TALGEWSSETPYAISHPSPALAQNIIINTRGGVS.QD-..E-I------ESF..NQITTNDVLKVIKDIVESNRYHAQFELAYLMLAQLLFTLKPRSAEALIWMHGTPLMQLPKFMTFRGLVN.E----------...--------------.-------..------...--.----.-....----------------.-.-----------------------------------------tvslapyvpfperldtygtwlankeaiyyhsllinevvmtyayeait....................
E5KIN6_9VIRU/1-436                   ............................myktf-----NSLSENAPVSTFETIQS-RGTTSLMTRLRLNLAYDNLDFNRVYS.....SKQDYTWLGKAAAFIV.EAELSLDGIAKQYLTLDGAINFDNVLAELRTGAGLQTTNVSNHSVS.VSSWRWYDNHVTLLFNLLRLYVMADLQ..LK.GPI.T..TGSY..PKYDDGHVEIDLNAGL..P..LPDET..-.-IV..W.SWP...GSK.NSLNYPEWGNFTEYMPLN.DEAYI.DVGGLLPEEVKMVL.MATGAWERQTNFKLDFPTPKLAERIYYRYPSKVT.MID..DWLDGEIPDINF..GLPNPKVVWNAIRKYVTTNNLYNQFYSAAAIINQVMLTPLPDSAEGMSWLIHEAQVVLPKFGSVRGRYP.FLLRGEGALIQ...AKALEDWTMLQTNP.NLLFSTS..MVTASL...FN.IGLA.V....RDSMLRGIANDSLSGV.D.TSLFQQPELAWAAAVSLACGIDVPLNGMSNCYVYYPTLA--ds.................................................................
RDRP_SCVLB/21-382                    .....................inssrvqygfna---------------------------------RIDMQYEDDSGTRKGSrpnafMSNTVAFIGNYEGIIV.DDIPILDGLRADIFDTHGDLDMGLVEDALSKSTMIRRNVPTYTAYA.-SELLYKRNLTSLFYNMLRLYYIKKWG..S-.IKY.E..K-DA..IFYDNGHACL-LNRQL..F..PKSRD..A.SLEssL.SLP...EAE.----IAMLDP-GLEFPEE.DVPAI.LWHGRVSSRATCILgQACSEFAPLAPFSIAHYSPQLTRKLFVNAPAGIE.PSS..---------GRY..THED---VKDAITILVSANQAYTDFEAAYLMLAQTLVSPVPRTAEASAWFINAGMVNMPTLSCANGYYP.ALTNVNPYHRL...DTWKDTLNHWVAYP.DMLFYHSvaMIESCY...VE.LG--.-....----------------.-.-----------------------------------------nvarvsdsdainkytf...................................................
A0A833RG21_9POAL/35-437              .....................lqtnvdglersv----------------------------------------------RRC.....VYQPMTPLGLATAKLE.RMGSVYDGLNKQYLTAEGQINFIAISDSLKLMAGKSYTEVSVFISK.AQSMRWDDNHVSLIFNMMRYVMLKKFA..EV.TGS.L..NGSL..GHFKEADLDIDLDQYW..T..TEYPE..E.CAF..T.TWP...TQPpAAGHYVSVMFLDDPFPAN.DSSAL.DLRGLTEDQTIFVL.IMLNAWTRRSRFKLDFSLPQLTHAAAYRGSYNVTtTYD..NWANG--T-EQV..AMPSSASAWEALRKYVTQNRLFEHFSTALYLMSAMTYQFVPETAEGIAWLAVDWKAVLPSFYSIRGRTS.FLNTGDAAFLN...QRPLDEWGYIANRI.EKINLMA..LVFSQA...VY.SGFA.I....RSVRKCFELEPQDLYQ.S.ESMFYSVENLISAAAAEFTRVDCPLSGTAGVYIS-------asteid.............................................................
A0A1L3KFC1_9VIRU/2-437               ................................p-LNFVNSLTNFSVSRKYVPSVKN-GRFSVINDTVATMHAANSTYNCDLQ.....LRTDFFYSGANTKLVEiDCHSSYYGYNRKYIDENGAYDPSLAIEEFARVAPE-KRVVKSDVMAlLQSHTQRDSHEAYLFNMLISYGFALLKkmNN.DKL.E..TLNIstPEYRDSHYQVNLADS-..-..TGAIT..Q.EIE..L.GVP...NDC.EEMDQPLWDLRREDNYFK.KPYYL.HYNAASRGQEVFYL.SHVFGRKRRSRVNFDLDISGIDT-----EQLTLD.PLNgkGYLPASYDGVPW..DKPET--LWMWIVDYVKLNRLEQNFAPVVECFAAVATQPLWESSEACVWQLAKKVVSLSSFSPTRARLR.TNLDGEPYVVD...PEAVSFLYNEVVDP.AS-YLYT..AVVANY...YElYGLY.TlldnEAANRENWRDVYTSTI.D.DLGVIKTHLCRAACVSVVTGLE-------------------igttmhegcftyydt....................................................
A0A2J6JN16_LACSA/35-194              .........................lfgtkvph-----------------------------------------LSQHKAFF.....SVQPMTMLGRTTAGIN.SNTSSYDGICDRYITTQGNLDVKSICKTVLTMGYMQTDQ-----LT.MCSRSWSDNHTTLLVNALGYALITKAI..ET.SGD.I..DNKL..PEFTDGKIRIDPNYGM..R..TTTDS..K.WEK..N.IWP...AGS.DVANYPEMIRIV------.-----.--------------.----------------------------------.---..------------..---------------------------------------------------------------------.-----------...--------------.-------..------...--.----.-....----------------.-.-----------------------------------------dqlrq..............................................................
A0A1L3KEZ0_9VIRU/36-436              .........................rvfdghvq-------------------------------------------SSRNHY.....AVQEMTAAGKLKAVLM.GTSSSLDGLTKQYLTPEGMVNISTVAEALKQSAGLQTQVWSTHVNR.MQHWGWADNHVSLLVNLLRFSILLRTQ..ESnGGN.L..DCSL..GVYMDGHVNVDMDQWW..S..SEYPE..K.YKM..D.TWP...TGT.GEENYPEYAHLTSTTPDT.DSNAI.DLRGLTAVEANIIL.MMTGAWSRKSRCRLDFSTPRLTELLYYRHGSTMT.GLE..SWLKEEQGAEMP..KMPNWKQVWSALRAYVGQNRLYDQFSTALYIVSFLAYQFVPATAEACVWLSFDWQIVMPVFHSIRGRYE.ILNDGEAALVS...HRAINEWGFINGKL.EKINLMC..MLVAQC...FQ.TGCA.V....RAMRKG-LETDPHDLYsT.ETEFYSASSFMSAAVSEATRSEFPMPGMAGIYL--------rtdv...............................................................
A7XMH5_9VIRU/19-448                  ...............fsfnaspariytffqsll---------------------------------RVD--CDGVIQNRPFY.....VNQPMTPLGKMTARFG.STVSTLDGISKPYLTPEGVINLNAIGDVLKSTGGMTSNAWSLHMGV.VKGWNWADNHVPLLVNMLRYTLIKHIQ..TV.AGT.L..DATL..GTYDDGHVTINSDGCFteA..YPEEA..A.WDG..W.PFAvpeGQA.AIEAWTQFTRFETAEPQA.NDVCL.DLRNLTPQESAFVL.LMCTQWQRKSRLRLDFALPELAHAISYRASAEPA.GFA..GWLSGTYVAAQGppAAPGPELAWSALKKYVNQNRLYDHFSTALYLVACSMYQFAPVTAEAHSWLDVDWDLSLPLFHSVRGRYT.FLNEDEAAFIS...HRALNEWSYYSVNI.NRINLLA..LTFSQA...YH.TGFA.V....RNVRKSITGKLDDIYT.T.EGELLAPISMIPSAASEAVRAPVPLSGMSGVYMY-------tqynlldy...........................................................
A0A0N9M6A6_9VIRU/40-169              ........................gdaskssar------------------------------------------------D.....IYQAMTPLGMLETAFE.SMGSNYDGLTKNYLTPEGAINYSNIHDTLKQSGGMNNQELSTFMAF.CQTISWHDNHVTLLFNMLRYVILMKSK..ES.KQN.L..NGAL..GRFQEDFLEINMD---..-..-----..-.---..-.---...---.------------------.-----.--------------.----------------------------------.---..------------..---------------------------------------------------------------------.-----------...--------------.-------..------...--.----.-....----------------.-.-----------------------------------------pacqlpag...........................................................
M4MG99_9VIRU/52-366                  ...........alftnvlspfgvfnaevvrdpp-------------------------------------------------.....----------------.----IFDGINARFFNDYGEIDERAIAETLRLKGTYRPNVIAELAPT.IASCN-SENHVSVLVNLLRFSIIKRSD..PK.DFK.F..VNDD..LFYDDGHLAVSYKNYL..K..REFNE..-.ELV..F.IFR...E--.G----IQIERFSESTVVG.DDFYCpNIENLSAREFNILL.TLLGSIKCDYPLRLAFSTPRLVDKLVLPLTTKHA.SYY..EVVN-DFTANE-..-------VDQIIRKYIFANRVETAFDLAYLIVVTAMFAPLPRAIEANGWVSPVNLIKLPNVGSVRGLMP.EMTGGQ-----...--------------.-------..------...--.----.-....----------------.-.-----------------------------------------plskspqkaltwlnykqspgriaihaiaaceayytg...............................
A0A2H5CRV4_9VIRU/40-437              .......................gdaskssard-------------------------------------------------.....IYQAMTPLGMLETAFE.SMGSNYDGLTKNYLTPEGAINFSNIHDTLKQSGGMNNQELSTFMAF.CQTISWHDNHVTLLFNMLRYVILMKFK..EC.KQN.L..NGAL..GRFQEDFLEINMDQY-..W..PDSYP..R.DCA..FdSWP...VDV.TEEGAIALEHLSTDQTRN.TGPAI.DLRGLTSTESIFVI.FMLHKWTRSSRFKIDVSTKKLTDTLQFRGVDVSA.LYD..SYWKQDTVMPA-..-LLSSNAAWHALAKYVTQNRLFDQFSSALYLVTALTYQYVPETAEGVAWLSLNWRVVLPEFTSIRGKFA.FFNTGDAAFLS...QRSLDEWEYIGGKT.EKINLMS..LTFCQA...FY.AGIA.L....RTTRRGLEMMPADIYG.T.DAEFWNAENFVSAAVAEFARIKVPMSGTPGLYITCDERLD-i..................................................................
H9XW59_9VIRU/255-436                 .....................rsitdpaalpwc-------------------------------------------------.....----------------.----------------------------------------------.---------------------------..--.---.-..----..----------------..-..-----..-.---..-.---...---.------------------.-----.--------------.----------------------------------.---..------------..---KSGTLFGWIKDYVTLNRVERAFSAAFETLTAIAFTPMPSYQESLVWDKAITQVVIAKFAPCRAKIP.SNLEGEAMVTD...MDAHDFVLDETKTPrKALFSGA..MINYLAfmgLH.AILS.N....YASRHENWRSAFLHSH.E.ELAILHDRTVRAALTSVITGKEMV-----------------tfmnpnlfvsydvt.....................................................
GAG_SCVLA/1-436                      .................................MLRFVTK-NSQDKSSDLFSICSDRGTFVAHNRVRTDFKFDNLVFNRVYG.....VSQKFTLVGNPTVCFN.EGSSYLEGIAKKYLTLDGGLAIDNVLNELRSTCGIPGNAVASHAYN.ITSWRWYDNHVALLMNMLRAYHLQVLT..EQ.GQY.S..AGDI..PMYHDGHVKIKLPVT-..-..IDDTA..G.PTQ..F.AWP...SDR.STDSYPDWAQFSESFPSI.DVPYL.DVRPLTVTEVNFVL.MMMSKWHRRTNLAIDYEAPQLADKFAYRHALTVQ.DAD..EWIEGDRTDDQF..RPPSSKVMLSALRKYVNHNRLYNQFYTAAQLLAQIMMKPVPNCAEGYAWLMHDALVNIPKFGSIRGRYP.FLLSGDAALIQ...ATALEDWSAIMAKP.ELVFTYA..MQVSVA...LN.TGLY.L....RRVKKTGFGTTIDDSY.E.DGAFLQPETFVQAALACCTGQDAPLNGMSDVYVTYPDLLEF...................................................................
A0A0N9MPY0_9VIRU/40-170              ........................gdaskssar------------------------------------------------D.....IYQAMTPLGMLETAFE.SMGSNYDGLTKNYLTPEGAINYSNIHDTLKQSGGMNNQELSTFMAF.CQTISWHDNHVTLLFNMLRYVILMKSK..ES.KQN.L..NGAL..GRFQEDFLEINMD---..-..-----..-.---..-.---...---.------------------.-----.--------------.----------------------------------.---..------------..---------------------------------------------------------------------.-----------...--------------.-------..------...--.----.-....----------------.-.-----------------------------------------pacqlpagf..........................................................
#=GC seq_cons                        .............................tt..........................................................p.hs.lG..ps.h..t.to.hDGlscpalT.cGslshsslhppLpttsshptp.hsthh...htphpWhDNHVsLLhNhLRhhhlhchp..Ep.tt.....sssh..shap-ualplshsth.......t........ht..h.saP...st..st.th.th..hsp..s.t.ss.hl.clcshsttcshhll.hhhstWpppo.hplsh.h.tLsppl.hph....t..ht..t.h..............p.t.hhpslpcYVstNRLaspFpsAh.hlsphhhp.hPpoAEuhsWLthsh.l.lPphtolRGths.hh.sGcshhhp...tpslppat.h.sp..thl..hu..hhhsph...h..hGhh.h....pt......................t...hh.uhhu.h.t........................................................................................
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