#=GF ID   LMP
#=GF AC   PF04778.16
#=GF DE   LMP repeated region
#=GF AU   Kerrison ND;0000-0002-1471-953X
#=GF SE   Pfam-B_2380 (release 7.6)
#=GF GA   26.00 26.00;
#=GF TC   26.20 26.20;
#=GF NC   24.40 24.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP   Coiled-coil
#=GF RN   [1]
#=GF RM   7543881
#=GF RT   Selection of Mycoplasma hominis PG21 deletion mutants by
#=GF RT   cultivation in the presence of monoclonal antibody 552. 
#=GF RA   Jensen LT, Ladefoged S, Birkelund S, Christiansen G; 
#=GF RL   Infect Immun 1995;63:3336-3347.
#=GF DR   INTERPRO; IPR006864;
#=GF DR   SO; 0001080; coiled_coil;
#=GF CC   This family consists of a repeated sequence element found in the
#=GF CC   LMP group of surface-located membrane proteins of Mycoplasma
#=GF CC   hominis.  The the number of repeats in the protein affects the
#=GF CC   tendency of cells to spontaneously  aggregate.  Agglutination
#=GF CC   may be an important factor in colonisation. Non-agglutinating
#=GF CC   microorganisms might easily be distributed whereas  aggregation
#=GF CC   might provide a better chance to avoid an antibody response
#=GF CC   since some of the epitopes may be buried [1].
#=GF SQ   15
#=GS D1J8L6_METH1/132-286      AC D1J8L6.1
#=GS D1J7J0_METH1/677-833      AC D1J7J0.1
#=GS D1J7V1_METH1/494-651      AC D1J7V1.1
#=GS D1J7V1_METH1/966-1125     AC D1J7V1.1
#=GS D1J7J0_METH1/834-990      AC D1J7J0.1
#=GS D1J7V1_METH1/809-965      AC D1J7V1.1
#=GS D1J7J0_METH1/206-362      AC D1J7J0.1
#=GS A0A501XCK3_9BACT/741-845  AC A0A501XCK3.1
#=GS D1J7V1_METH1/652-808      AC D1J7V1.1
#=GS D1J7J1_METH1/181-329      AC D1J7J1.1
#=GS D1J7J0_METH1/520-676      AC D1J7J0.1
#=GS D1J7V1_METH1/337-493      AC D1J7V1.1
#=GS S8C103_9LAMI/29-159       AC S8C103.1
#=GS D1J7J0_METH1/363-519      AC D1J7J0.1
#=GS A0A4V2UI99_PAULE/3-98     AC A0A4V2UI99.1
D1J8L6_METH1/132-286                 ...................vm--RMLDNKLIDNDVDIQKTKKDLNSQIINALEIFNKNN...IDEINNLNKSLTFKISEVEDILIKFKQSKEQEFEKLQKTRKLVEEFLAKDVVKSD....YYANIVRNLNREVSRRGNVSISSNKSEIVAANINLNEVL---KQSKEFVENDMQKLRDSLISLI-v..............
D1J7J0_METH1/677-833                 .....................NANTLSAKLTDKDNTIQQAKTELEKEVQKANQAIKSNN...TASMQSAKSSLDAKVAEITKKLETFNKDKEAKFNELKQTRNQIQEFI-NTNKNNP....NYSELISQLTSKRDSKNSVTDSSNKSDIESANTELKQALAKANADKVQADNLAKSIKEQLNNSV-s..............
D1J7V1_METH1/494-651                 .....................KANTLLPQLNDNDSEIVKAKESLNAEITNANKAVNQND...NASMQSAKSSLDDKVTKIQNQLTEFNKDKDAKFKELEQTRKDIDNFLTDDVKNNP....NYATLVKDLTNAKDDKKSVTKSSNKSEIIAANDELKQALDKAKVAKDQIDEANKSIKEQLSDSI-t..............
D1J7V1_METH1/966-1125                .....................SANTLLAKLTDKDNTIQQAKTELEKEVQKANQAVASNN...TASMQSAKSSLDAKVTEITKKLETFNKDKDAKFKELEQTRKDIDEFI-KQIENDPqtkkNYQNIVKNLKDKKAEKNSITFSNNKKEIQDANKSLQDELNNAKITKKGITDFYNS-KKQLEDLIK...............
D1J7J0_METH1/834-990                 .....................NANTLSAKLTDKDNTIQQAKTELEKEVQKANQAIKSNN...TASMQSAKSSLDAKVAEITKKLETFNKDKEAKFNELKQTRNQIQEFI-NTNKNNP....NYSELISQLTSKRDSKNSVTDSSNKSDIESANTELKQALNTAKAKKSSIDNELRPLKNDLQSKIE...............
D1J7V1_METH1/809-965                 .....................SANTLLAKLTDKDNTIQQAKTELEKEVQKANQAVASNN...TASMQSAKSSLDAKVTEITKKLETFNKDKDVKFKELEQTRKDIDEFI-NTNKTNP....NYSTLISELTSKRDSKNSVTNSSNKSDIETANTELKQALAKANTDKDQADNLARSTKEQLNKSI-s..............
D1J7J0_METH1/206-362                 .....................QANQLLPQLSDNDSEIAKAKKSLDAEIKNANQAVASNN...TASMQSAKSSLDAKVAEITKKLETFNKDKEAKFNELKQTRNQIQEFI-NTNKNNP....NYSELISQLTSKRDSKNSVTDSSNKSDIESANTELKQALAKANADKVQADNLAKSIKEQLNNSV-s..............
A0A501XCK3_9BACT/741-845             ...kqnkrqkfegfwtkeywn--------------------------------------...----------------------------KLQYIKDLEDKRHEADNLL-NELRENP....LYKEIYDELAAKLNKYKDVNISSSSDDIIEAFNEINKAINNAKIQKEIADNV-------------ghveqpeen......
D1J7V1_METH1/652-808                 .....................NANQLLNKLVDSDKDIQKAKTELSQEIQSASQELNLNN...PTSMQSAKESLDAKVTEITKKLETFNKDKDVKFKELEKTRKDIDEFI-NTNKTNP....NYSTLISELTSKRDSKNSVTNSSNKSDIETANTELKQALAKANTDKAQADNLAKSTKEQLNNSI-s..............
D1J7J1_METH1/181-329                 knklkaiidsepsknvdssre------------------------------LQIFNDSNveaKSTLEDIDKKIDAAIRANNDLNEKIQNYKSAKLSDLESSRNDLSNFIANDLK-NP....VYKEIADKINEKIKEVKGVGKNSTIKELQAAIKTLADAKEKAIKEKAWIDRV-------------gikkvleiqrs....
D1J7J0_METH1/520-676                 .....................NANTLSAKLTDKDNTIQQAKTELEKEVQKADQAIKSNN...TASMQSAKSWLDAKVAEITKKLETFNKDKEAKFNELKQTRNQIQEFI-NTNKNNP....NYSELISQLTSKRDSKNSVTDSSNKSDIESANTELKQALAKANADKVQADNLAKSIKEQLNNSV-s..............
D1J7V1_METH1/337-493                 .....................NAKEFKKLLIDNDQKIVDLKSNLDNEISKAEQSL-SKD...KESMESANDLLNTKLIEYKEILNKFNQEKEAKFNELEQTRKNIENFLTDEVKNNP....NYATLVKDLTNAKDAKKSVTNSSNKSDIIAANEALIQALADANKAKDQVDEANKSIKEQLNALID...............
S8C103_9LAMI/29-159                  .............ialsarin---------------------ALESEISQLRQQLSERDg.fISHLESQLESLDASVIDAEDKLAAAQQEKENLTRENEQLSSAVKKLNRDVAKLEI....FRKTLMKSLQEDEDSQVSVTNYSSASRLIANNDD-------------------------------dvsnqaqlppedset
D1J7J0_METH1/363-519                 .....................NANTLSAKLTDKDNTIQQAKTELEKEVQKADQAIKSNN...TASMQSAKSSLDAKVAEITKKLETFNKDKEAKFNELKQTRNQIQEFI-NTNKNNP....NYSELISQLTSKRDSKNSVTDSSNKSDIESANTELKQALAKANADKVQADNLAKSIKEQLNNSV-s..............
A0A4V2UI99_PAULE/3-98                ................qssei--------------------------------------...-----------------------------QQRFNHIEQTVRQMSQAC-QSSPNIP...sDLKQCITELDQQTGQAKQVIQSQNEQQIIQCVDSLEDLGDRAKAACEQAGNLNQNVRDAV-----mqahq..........
#=GC seq_cons                        .....................pANpL.spLsDpDspItpAKppL-pElppAsQulpsNN...suSMQSAKsSLDAKVsEIscKLEsFNKDK-AKFpELEQTRppIpEFI.NssKNNP....NYupLlspLTsK+DuKsSVTsSSNKSDIpuANsELcQALs+ApssKsQsDNls+SlK-QLps.l.s..............
//