#=GF ID   Lenti_VIF_2
#=GF AC   PF07401.16
#=GF DE   Bovine Lentivirus VIF protein
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_21067 (release 10.0)
#=GF GA   22.00 22.00;
#=GF TC   22.30 24.30;
#=GF NC   20.30 18.20;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -E 1000 -Z 75585367 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   9440006
#=GF RT   Sequence data analysis reveals a relationship between LSR2, the
#=GF RT   recombinant fusion protein mimicing M.Leprae and VIF of bovine
#=GF RT   immunodeficiency virus (BIV). 
#=GF RA   Ramakrishnan S, Sukhaswami MB, Patil KM, Eswaran C; 
#=GF RL   J Biomol Struct Dyn 1997;15:605-609.
#=GF DR   INTERPRO; IPR009979;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of several Lentivirus viral infectivity
#=GF CC   factor (VIF) proteins. VIF is known to be essential for ability
#=GF CC   of cell-free virus preparation to infect cells [1]. Members of
#=GF CC   this family are specific to  Bovine immunodeficiency virus (BIV)
#=GF CC   and Jembrana disease virus which also infects cattle.
#=GF SQ   4
#=GS C9DI72_CAEV/62-209  AC C9DI72.1
#=GS C0JIH0_CAEV/65-219  AC C0JIH0.1
#=GS VIF_CAEVC/94-215    AC P33462.1
#=GS VIF_JEMBR/1-197     AC Q82852.1
C9DI72_CAEV/62-209             ........edrtyeywkigrepwvmklrrrkgelrrglav----------------------------------------------------------------------VW--QYQCQGNWEDVGKWFTDTGNYRHVD-NKFWFHWrVAMCSCHKGGFQVRDFLLGGHR-WDLCKSCIQGEIVRTTDANSLQRWSLLQLARNHPFVVMPLWRAR------------------------rvptqdfpwcrnptg.....
C0JIH0_CAEV/65-219             yehweinswewkmklrrvkqwidprgtgtpwqykvgkdwk-----------------------------------------------------------------------------------SIGVWFLQAGDYTKVDRHFWWAWR.IVICSCRKEKFDIREFLMGKHR-WDLCKSCAQGEVIRHTRPKSLERLAWLQLVDTHTFQVLPLWRARRGSTI-------------------dfpwcrdttgfvqawtiqdc
VIF_CAEVC/94-215               .....pwqykvggtwksigvwflqagdyrkvdrhfwwawr-----------------------------------------------------------------------------------------------------------.ILICSCRKEKFDIREFMRGRHR-WDLCKSCAQGEVVKHTRTKSLERLVLLQMVEQHVFQVLPLWRARRSST--------------------tdfpwcrdttgythaws...
VIF_JEMBR/1-197                ........................................MERTIQSPMGRRRGSSGRRKRNANIISPPAYAIYPAPQYRYPRWEFVMNDLYSQTARLQKEEIIITYRYAVWAREWKIQTGFLDLGYLMTPAGTHTTGELNELDLFW.VRYTLCQHRSPKWRELLLGEMT-HTSCRRTAQAAVVSHTKPHTLQRLAGLTLVCNQNLCWYPVGTVTRNSPLWMHFTTGKEPTIQQLSGHP....................
#=GC seq_cons                  .........chthphhplt.....ht.hp.ht.hhhh.hh...................................................................................slGhhhh.sGsapps-.p.h.hah.lhhCSC+KcpFclREFLhGcHR.WDLCKSCAQGEVV+HT+s+SLpRLuhLQLVcsHsFpVhPLWRARRsSs....................p....p.shsh..th.....
//