#=GF ID Marek_SORF3
#=GF AC PF07153.15
#=GF DE Marek's disease-like virus SORF3 protein
#=GF AU Moxon SJ;0000-0003-4644-1816
#=GF SE Pfam-B_16263 (release 10.0)
#=GF GA 25.00 25.00;
#=GF TC 27.90 91.40;
#=GF NC 24.00 17.70;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch --cpu 4 -E 1000 -Z 75585367 HMM pfamseq
#=GF TP Family
#=GF DR INTERPRO; IPR009823;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC This family consists of several SORF3 proteins from the Marek's
#=GF CC disease-like viruses. Members of this family are around 350
#=GF CC residues in length. The function of this family is unknown.
#=GF SQ 11
#=GS A0A1V0M8P0_9ALPH/2-253 AC A0A1V0M8P0.1
#=GS G9CUJ9_9ALPH/2-254 AC G9CUJ9.1
#=GS VG90_GAHVM/2-254 AC Q9E6M0.1
#=GS A0A068EW51_9ALPH/2-253 AC A0A068EW51.1
#=GS ORF3_PSHV1/6-257 AC Q6UDF3.1
#=GS A5A419_9ALPH/5-254 AC A5A419.1
#=GS Q782M8_9ALPH/5-259 AC Q782M8.1
#=GS Q89744_ILTV/39-279 AC Q89744.1
#=GS A0A1R3TCX9_9ALPH/2-251 AC A0A1R3TCX9.1
#=GS Q6R5Q4_9ALPH/2-254 AC Q6R5Q4.1
#=GS Q9DPP4_MEHV1/2-251 AC Q9DPP4.1
A0A1V0M8P0_9ALPH/2-253 .DRLLSTAFDEKDVPHGRFWRPPYKTNEITFWPILAEDIVRGVAQCTEARERLA-----SSKHHNPNDDDGGR------MSK----QYMEMWARMAILSAYRLYTAIEDILPIEEIIDTADSDLTGGGVWQMTYHEWDVRDAAKISSAGPSIMALFSTHMETWTAGLRSADR--LGECGEYKHNM------QISAPVV--KNALLGALEVARYVVVLALPICNYQVPPGMEDD---RAGRAIRNCCGRLQRRMIS--GYTRDPGEYL-------DAEETYYRAMVR-----ivtf.
G9CUJ9_9ALPH/2-254 .SRVNATMFDDMDIPRGRFGKPPRKITNVNFWHVVVDEFTEGIVQCMEARERLGLLCTISTNEG----------------SITSFDIHKDMWCQMVIWSAYRFFAMMDKMFSIETITNFTETDLTETGQWRIFYRTWDVRDALKMKQVGPFLPALFSFHLENWTTMLSIGINK-----GYDRHNT-----RNMFMTIQSARNVLSGAMEVARYAVVLALPVCEYRTPLGLPDD---SIGNAIKTCCTQMQANRLTETGISKDSGHKINDS----SEEELYY----RTIHDL.....
VG90_GAHVM/2-254 .SRVNATMFDDMDIPRGRFGKPPRKITNVNFWHVVVDEFTEGIVQCMEARERLGLLCTISTNEG----------------SITSFDIHKDMWCQMVIWSAYRFFAMMDKMFSIETITNFTETDLTETGQWRIFYRTWDVRDALKMKQVGPFLPALFSFHLENWTTMLSIGINK-----GYDRHNT-----RNMFMTIQSARNVLSGAMEVARYAVVLALPVCEYRTPLGLPDD---SIGNAIKTCCTQMQANRLTETGISKDSGHKINDS----SEEELYY----RTIHDL.....
A0A068EW51_9ALPH/2-253 .DRLLSTAFDEKDVPHGRFWRPPYKTNEITFWPILAEDIVRGVAQCTEARERLA-----SSKHHNPNDDDGGR------MSK----QYMEMWARMAILSAYRLYTAIEDILPIEEIIDTADSDLTGGGVWQMTYHEWDVRDAAKISSAGPSIMALFSTHMETWTAGLRSADR--LGECGEYKHNM------QISAPVV--KNALLGALEVARYVVVLALPICNYQVPPGMEDD---RAGRAIRNCCGRLQRRMIS--GYTRDPGEYL-------DAEETYYRAMVR-----ivtf.
ORF3_PSHV1/6-257 .DYAFAAAFHGTDLPGGRFWR-PRACAPVFVWSEVACAVALSARIFFEARERLA---AMPIGEGRPPYGRGTELYHAARRTVSS---AARLWDALVALAA----------------SAAEEICVMAWGKLEPMPYLWDTRDATKIPVLGPKLMALFSAVADGATAIATEARNSLVGEAGH-HHNTLPRQPPSMDMPVQ-ARLSLMLGMEIVRCILALALPSASF----NIPDDATESIEESVR-----IFGARLS-LALAKDP---IPDPVGKFEEEETYYLRCLRSIYEI.....
A5A419_9ALPH/5-254 n-RLFAAAFNGIDTPRGRFWNPRMREDALVFWPRFVDEIVHGIKQCAEARERLA---SICISEP--AC-------------GDNYDPNIDMWAQITLWSVYHLCEAISKRFSVDELALLGHRDLSCGGPWKFVFNEWDFRDSGKLRLVGPGLMAMFTAHMENWTAGLSTAPDM----AT------MSVSTPCERMPTLITKVAMLCALEVARFIAVLVLPISDYRVPPGLPDD---DAGRALRVCCATMQQRRLLGPELEP-------DA--RLDGEELYYRALVRTIM--gi...
Q782M8_9ALPH/5-259 .SRSYAAVFNDMDVPRGRFAKPPRKVTRINFWPMLADELTNGIVQCVESRERLALFHTTSANDI----------------TNISFDIHKDMWYRMVLWSAYRFFSTMGEMFLIDDISNYVAPDLVENGRWKLYCRTWDIRDAAKIKLIGPFLPALFSFHLENWTAMLSLGIHK-----GFDRHNA---RGTLTAMPFL--KKILVGAMEIARFAVVLSLPICEYRTPMGLPED---EIGNAIRLCCAQMQANRLEPTEITNDAEGKSNDG----SAEELYY----RALHEIvk...
Q89744_ILTV/39-279 d-LAFSAAFRGTDLPGGRFWR-ASQSCDIFFWPDLAAVIVQAARAYFEGKERLG---SLQVAED--ITAHDPRIAPAAKRAVAA---AVGLWTALSELVG----------------GPNGELESKVWGKQIPRAAAWEIRDVPKVPVIGPDILSFFSAAVELP-VLYIRARGGAHSRSAH--WNNQSSAPAAG-------LAAIRIGMEMVRSLLVIALPLSNF----TLPEDLPEGSQNSIR-----AFVAHLM-NCVATDK---IMSPDVRVPVEESFYSHCLREI---im...
A0A1R3TCX9_9ALPH/2-251 .DRIFIGTFSGLDIPRGRFWQPKTSSYNIMFWSNLIDDMLNAARQCSEARERIA---SIKIGER-PE-D-------------CPHDPYLDIWAQAAIWAVYRVCKEIDDRFSVEELSTLAKEGLTAGDQWKLFPHKWDFRDVAKMPLLGSSILLLFTCNLEICTAGLIEARRYDVMWKGG---NG--------GIVSTTAKHAVLSVLEVARFVLALTLPLCDHRIPPGIPHD--DNPGRAIRLCASMMQQNLIS-----RDD-EDPPDA--QLDGEEQYF-RSLF-----altef
Q6R5Q4_9ALPH/2-254 .SRVNATMFDDMDIPRGRFGKPPRKITNVNFWHVVVDEFTEGIVQCMEARERLGLLCTISTNEG----------------SITSFDIHKDMWCQMVIWSAYRFFAMMDKMFSIETITNFTETDLTETGQWRIFYRTWDVRDALKMKQVGPFLPALFSFHLENWTTMLSIGINK-----GYDRHNT-----RNMFMTIQSARNVLSGAMEVARYAVVLALPVCEYRTPLGLPDD---SIGNAIKTCCTQMQANRLTETGISKDSGHKINDS----SEEELYY----RTIHDL.....
Q9DPP4_MEHV1/2-251 t-RAGAIIFDNLDIPRGRFGQPRGKINDFNYWTLLTDELTCGIIQCMESRERIALVHSATYDHG-------------------QFDIQKDMWCQIVLWSAYRFLSTLERSFSIKSVLEFGDTNVNGSANFAINCTPWDLRDSPKMKMFGTLLPALFSFHLENWTTMLSIGASK-----GYSQCNL-----RQIFMRNPSFKNVIIASLEVARSAIVLTIPICEYRTPPGLPDD---YIGNAIKLCCARMQHLRLEHPGQCIDQ--MCSDP----SEEEMYYRYV-------qrlvt
#=GC seq_cons .sRlhAssFcshDlPRGRFh+PPpKhsslsFWshlsD-lspGlhQChEARERLA...ohossEs................ohssaD.ahDMWsphslWSAYRhhshh-chFsI-plsshs-sDLossGpWchhh+pWDlRDAsKhp.lGPhL.ALFShHlEsWTshLohuhst.....Ga.+HNs......phhMsh..h+ssLhuAhEVARaslVLALPlC-YRsP.GLPDD...shGpAIRhCCspMQtsRLo.suls+Ds.thlsDs....stEEhYY.h..Rtl....h...
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