#=GF ID   NADH-UOR_E
#=GF AC   PF16514.9
#=GF DE   putative NADH-ubiquinone oxidoreductase chain E
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   pdb_2lxr
#=GF GA   25.00 25.00;
#=GF TC   69.40 69.30;
#=GF NC   23.60 20.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP   Domain
#=GF CL   CL0397
#=GF DR   INTERPRO; IPR032424;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This putative NADH-ubiquinone oxidoreductase chain E family is
#=GF CC   found in Epsilonproteobacteria, chiefly in Helicobacter pylori.
#=GF CC   All proteins in the family are less than 100 residues in length.
#=GF SQ   64
#=GS A0A268TBW8_9HELI/1-74  AC A0A268TBW8.1
#=GS I2K609_9PROT/1-74      AC I2K609.1
#=GS A0A363CZC5_9PROT/1-74  AC A0A363CZC5.1
#=GS A0A7L8V5B6_9PROT/1-74  AC A0A7L8V5B6.1
#=GS A0A6L5WFS4_9PROT/1-73  AC A0A6L5WFS4.1
#=GS A0A1P8KQ89_9PROT/1-74  AC A0A1P8KQ89.1
#=GS A6QCF9_SULNB/1-74      AC A6QCF9.1
#=GS A0A7M1LGS3_9PROT/1-73  AC A0A7M1LGS3.1
#=GS F8KPX8_HELBC/1-78      AC F8KPX8.1
#=GS A0A099TWS5_9HELI/1-74  AC A0A099TWS5.1
#=GS A0A7M1AWY3_9PROT/1-74  AC A0A7M1AWY3.1
#=GS A0A345J108_9PROT/1-74  AC A0A345J108.1
#=GS E6WYR3_NITSE/1-74      AC E6WYR3.1
#=GS A0A128EPJ0_9PROT/1-73  AC A0A128EPJ0.1
#=GS A0A5P8P304_9PROT/1-73  AC A0A5P8P304.1
#=GS A7HZV2_CAMHC/1-73      AC A7HZV2.1
#=GS A0A381DJI3_9PROT/1-73  AC A0A381DJI3.1
#=GS Q30PI2_SULDN/1-73      AC Q30PI2.1
#=GS A0A2D3WI53_9PROT/1-74  AC A0A2D3WI53.1
#=GS A0A3D8HWK8_9HELI/1-73  AC A0A3D8HWK8.1
#=GS A0A3D8HX56_9HELI/1-78  AC A0A3D8HX56.1
#=GS I7GT60_9HELI/1-73      AC I7GT60.1
#=GS A0A6M0L1A6_9PROT/1-73  AC A0A6M0L1A6.1
#=GS D5V7K3_ARCNC/1-74      AC D5V7K3.1
#=GS A0A6G5R2F4_9PROT/1-73  AC A0A6G5R2F4.1
#=GS V8CFR6_9HELI/1-74      AC V8CFR6.1
#=GS A0A2D3VUV3_9PROT/1-73  AC A0A2D3VUV3.1
#=GS A0A4Q0XNM2_9PROT/1-74  AC A0A4Q0XNM2.1
#=GS Q0P853_CAMJE/1-72      AC Q0P853.1
#=GS Q7MA47_WOLSU/1-74      AC Q7MA47.1
#=GS A0A1I5N443_9PROT/1-74  AC A0A1I5N443.1
#=GS A0A091AI66_9PROT/1-74  AC A0A091AI66.1
#=GS J0LBA9_9PROT/1-74      AC J0LBA9.1
#=GS A0A099V3F3_9HELI/1-74  AC A0A099V3F3.1
#=GS E0UQK3_SULAO/1-74      AC E0UQK3.1
#=GS H5V8K6_HELBI/1-62      AC H5V8K6.1
#=GS Q7VFS6_HELHP/1-73      AC Q7VFS6.1
#=GS A0A3D8II25_9HELI/1-74  AC A0A3D8II25.1
#=GS O25854_HELPY/1-74      AC O25854.1
#=GS A0A2D3WDW7_9PROT/1-73  AC A0A2D3WDW7.1
#=GS V8CAV8_9HELI/1-74      AC V8CAV8.1
#=GS A0A5C8L481_9PROT/1-72  AC A0A5C8L481.1
#=GS A0A4U8UCL2_9HELI/1-74  AC A0A4U8UCL2.1
#=GS D1AZ42_SULD5/1-73      AC D1AZ42.1
#=GS A0A4Q0XYK8_9PROT/1-74  AC A0A4Q0XYK8.1
#=GS A0A268U1X3_9HELI/1-74  AC A0A268U1X3.1
#=GS A0A2W6MU15_9HELI/1-74  AC A0A2W6MU15.1
#=GS A7GW66_CAMC5/1-73      AC A7GW66.1
#=GS A0A2P8R0Y8_9PROT/1-73  AC A0A2P8R0Y8.1
#=GS C8PF43_9PROT/1-73      AC C8PF43.1
#=GS A0A1B8J9N3_9HELI/1-74  AC A0A1B8J9N3.1
#=GS A6Q1P7_NITSB/1-79      AC A6Q1P7.1
#=GS A0A7S7LZN4_9PROT/1-73  AC A0A7S7LZN4.1
#=GS A0A3G9HJ85_9PROT/1-74  AC A0A3G9HJ85.1
#=GS T0JFJ4_9PROT/1-73      AC T0JFJ4.1
#=GS E4TYF8_SULKY/1-74      AC E4TYF8.1
#=GS S3XJR4_9PROT/1-73      AC S3XJR4.1
#=GS A0A329ZUS8_9HELI/1-73  AC A0A329ZUS8.1
#=GS A0A347VN22_9HELI/1-74  AC A0A347VN22.1
#=GS A0A345J8N9_9PROT/1-74  AC A0A345J8N9.1
#=GS A0A3D8IFJ4_9HELI/1-74  AC A0A3D8IFJ4.1
#=GS A0A2D3WAK7_9PROT/1-73  AC A0A2D3WAK7.1
#=GS A0A6M0L6A6_9PROT/1-74  AC A0A6M0L6A6.1
#=GS A0A3D8I6K7_9HELI/1-74  AC A0A3D8I6K7.1
A0A268TBW8_9HELI/1-74             MKRFDLRNLKDD....FYKRLGELIDEELQNEEVGIFIFEL.....GNFENVQKSADFIKNRGDELMNSIRFNQVDWTLVVKK.
I2K609_9PROT/1-74                 MKRYDLRHLKDD....FYDRMVELIDQGLKVGEVGIFLFEV.....GDFTSIQKSADVIKATGHDLMNSLKFNEVDWTIVVKK.
A0A363CZC5_9PROT/1-74             MKRFDLRYLKDD....FYTRMLELLDKQITPEETAIILFEI.....GDFSHIQKSADVVYEAGYTLMNSLKFNEVDWTIVVKK.
A0A7L8V5B6_9PROT/1-74             MKRYDLRPLKDN....FYNRMFDLIKNDIDEGENAIFLFEI.....GDFSPIQKVADMVKENNYTLMNSLKFNEVDWTVVIKK.
A0A6L5WFS4_9PROT/1-73             MKRYDLRHLKSD....FLSRMGEIIK-DSNRGSVMEFIFEI.....GDFSGIQKSADLVAGLNSTLMNSLKFNRADWIIVVKK.
A0A1P8KQ89_9PROT/1-74             MKRFDLRHLKND....FYDRMLELLDKQISDGETAIIIFEI.....GDFENVQKSADVVYENGYTLMNSIKFTEVDWTLVIKK.
A6QCF9_SULNB/1-74                 MKRYDLRHLHDD....FYDRMVELIDKGLKVGEVGIFLFEV.....GDFSSIQKSADVIKETGHDLMNSLKFNEVDWTVVVKK.
A0A7M1LGS3_9PROT/1-73             MKRYDLRHLGEN....FSIRMGEILK-NSSYGEVSQFVFEV.....GDFSSVQRSAELVNALNSTLLNSIRFNRSDWIVTVKK.
F8KPX8_HELBC/1-78                 MRRFDLRPLRDEpneaILNRLGAIMDSSVAEDEVVIFMLEV.....VDFDIVEQSAEFIQKRGDLLLNSLRFNRVDWTLVVKK.
A0A099TWS5_9HELI/1-74             MKRFDLRHLKSN....FYDKMGELIDTRLERGEVGIFLFEK.....GEHENVAKSAAYVKDRGHLLMNSLQFNHVDWTIVVKK.
A0A7M1AWY3_9PROT/1-74             MKRYDLRHLKDN....FEPRMKEILGETHKPSETLIFLFEI.....GDFTPVQRSADLVKECGWELYNSLKFNEVDWTIVVKK.
A0A345J108_9PROT/1-74             MKRFDLRLLKDN....FYERMLELMDKDISKGENAIFLFEI.....GDFSSVQKSADLIKEHGYTLMNSIKFNEVDWTIVVKK.
E6WYR3_NITSE/1-74                 MKRYDLRHLHDN....FYDRMIELIETDLKPKEVGIFLFEV.....GDFSPIQKSADLVKEHGHELMNSLKFNEVDWTIVVKR.
A0A128EPJ0_9PROT/1-73             MKRYDLRHLKEN....FLTRMGEIIR-DTQSGEVMIFIFEI.....GDFSSVQKSADLVAGLNSTLMNSLKFNQVDWTIVVKK.
A0A5P8P304_9PROT/1-73             MKRYDLRHLKDN....YEPRMREILD-EHKQGEVAIFLFEI.....GDFTPIQNSADLVKECGYELLNSLKFNEVDWTIVAKK.
A7HZV2_CAMHC/1-73                 MKRYDLRHLGKN....FLNRMGEIIK-NSQNGEVIIFIFEI.....GDFSGVQQSADLVEALNSTLLNSLQFNQVDWTIIVKK.
A0A381DJI3_9PROT/1-73             MKRYDLRNQKDN....TLNRLKELLD-MMKSDEVAIFMFEI.....NDFSIVESSAEIVKEFGCELMNSLKFNQVDWQIVVKR.
Q30PI2_SULDN/1-73                 MKRYDLRHLKDG....FEPRMKEILL-AHKAAEVAIFIFEI.....GDFTPIQRSADLVKECGYELLNSLKFNEVDWTIVTKK.
A0A2D3WI53_9PROT/1-74             MKRYDLRHLKDD....FYGRMVELIEKGLNVGEVGIFLFEV.....GDFSSIQKSADVVKAAGHDLMNSLKFNEVDWTIVVKK.
A0A3D8HWK8_9HELI/1-73             MKRFDLRHLHND....FLPRLKELVT-QSKIGEVSFFLFEA.....DVFENTHKASQSAQECGAQILNSIRFNERDWTLIVRK.
A0A3D8HX56_9HELI/1-78             MKRYDLRQYKND....FINRMNEIIKDELSDGEVGIFIFEIgg.dgSDGSIVNMANDSIKSLGFQLLNSIRFNEVDWSIVIKK.
I7GT60_9HELI/1-73                 MRRYDLRHLAND....FEKRLSELCD-ELSQGEVAIFLFEV.....RDFNNVQKAIDCVLNRGDELLNSLRFNEVDWSIVVRR.
A0A6M0L1A6_9PROT/1-73             MKRYDLRHLKAE....FEPRMKELLG-THTDGEVAIFLFEI.....GDFTPIQKSADLVKECGYELMNSLKFNEVDWTIVAKK.
D5V7K3_ARCNC/1-74                 MKRYDLRPLKDD....FYSRMLELMDKDIKDGENAIFLFEI.....GDFSHIQKSADVIYEAGYTLMNSLKFNEVDWTIVVKK.
A0A6G5R2F4_9PROT/1-73             MKRVDLRHLRGE....FLSELSNQAK-RLNDGEVCIFLFEP.....VEFDNIEKSVNLIREEGCELMNSLKFNQVDWTIVVKK.
V8CFR6_9HELI/1-74                 MKRFDLRHLHND....FYARMGELINTELAQGEVGIFLFEI.....DDFSNVAKSAEFICNMGYEVMNSVRFNHRDWTLVVRK.
A0A2D3VUV3_9PROT/1-73             MKRYDLRHLKDN....FEPRMKELLA-THKAGEVAIFLFEI.....GDFSPIQKSADLVKECGYELMNSLKFNEVDWTLVCKK.
A0A4Q0XNM2_9PROT/1-74             MKRFDLRPLKDN....FYDRLLELMDKEIAPNENAIFLFEI.....GDFSPIQKVADVVYENDYTLMNSLKFNEVDWTVVVKK.
Q0P853_CAMJE/1-72                 MRRVDLRKSKE-....LFEDLAQIIK-EAKQGEVLVVLFEI.....GDFSPVEKSFSFVKEQGCELLNSLKFNQVDWTIVIKK.
Q7MA47_WOLSU/1-74                 MKRFDLRHLGGD....FYSRMGEILDQEVSEGEVAIFLFEV.....GDFSSVQKSADWVLERGDELLNSLRFNEVDWTIVVKR.
A0A1I5N443_9PROT/1-74             MVRYDLRHLHDD....FYDRMMELLDNGTKPGEVAIFLFEI.....GDFSPIQKTADMVKEAGHELLNSLKFNEADWTIVVRR.
A0A091AI66_9PROT/1-74             MKRYDLRHLKGD....FYDRMGSILKTEAQSGEVIIFLFEI.....GDFSPIQKSADLVKELGCELMNSLKFNEADWTIVVKK.
J0LBA9_9PROT/1-74                 MQRYDLRHLHSD....FYGRMVEIMSDEVEQDEVAIFMFEI.....GDFSPVQKSADAIKEAGYTLMNSLKYNEADWTIVVKK.
A0A099V3F3_9HELI/1-74             MKRFDLRHLKSE....FYDKMGELIETQLESGEVGIFLFEK.....GEHENVAKSANYVKERGHTLMNSLQFNHVDWTIVVKK.
E0UQK3_SULAO/1-74                 MKRYDLRHLKDN....FEPRMKEILEESHKPTETLIFLFEI.....GDFSPIQRSADLVKECGCELYNSLKFNEVDWTIVVKK.
H5V8K6_HELBI/1-62                 MRRFDLRPLRDEpneaVLNRLGAIMDASVAADEVVIFMLEV.....VDFDIVEQSAEFIQKKGRSL-----------------a
Q7VFS6_HELHP/1-73                 MRRYDLRHLADN....FEQRMNELCE-DLPYGEVAIFLFEV.....RDFSNVQKAIDCILNRGYDLLNSLRFNEVDWSIVVKR.
A0A3D8II25_9HELI/1-74             MKRFDLRHLKND....FYNKLGELIDSELTKDEVGIFLFEK.....GDHENVAKSAMYVQERGHILMNSLQFNHVDWTIIVKK.
O25854_HELPY/1-74                 MKRFDLRPLKAG....IFERLEELIEKEMQPNEVAIFMFEV.....GDFSNIPKSAEFIQSKGHELLNSLRFNQADWTIVVRK.
A0A2D3WDW7_9PROT/1-73             MTRYDLRHLKDN....FYGRMMELLD-AAPDLEVCIFMFEI.....GDFSPIQKSADMVQEAGHELMNSLKFNEVDWTIVVKK.
V8CAV8_9HELI/1-74                 MKRFDLRHLGAD....FYTKMGEILESRLQNGEVGILLFEL.....GEFSNVAKSAEFAQKNGCEILNSVRFNHCDWTLVVRK.
A0A5C8L481_9PROT/1-72             MRRVDLRKSQN-....LFQDLKNIID-DACMGEVLVVLFEI.....GDFSNVEKSFAFVKEQNCELLNSLKFNQVDWTIVIKK.
A0A4U8UCL2_9HELI/1-74             MKRFDLRHLKND....FAGRLKEILNNELQKEEVGIFLFEV.....IDFDNVQKSADIVDECGYILMNSLRFNEVDWTIVVKK.
D1AZ42_SULD5/1-73                 MQRYDLRHLGDD....FYGRMLEIID-ESTLGEVSIFMFEI.....GDFSPVQKSADVIKEAGWTLMNSLKFNEADWMIVVKK.
A0A4Q0XYK8_9PROT/1-74             MKRFDLRPLKDN....FYDRMLELMQKDIKEGENAIFLFEI.....GDFSAIQKSADVIYEAGYTLMNSLKFNEVDWTIVVKK.
A0A268U1X3_9HELI/1-74             MKRYDLRHLKSD....FYGKLEELMESGLEREEVGIFLFER.....GAYENIQKSADFVKERGYILMNSLQFNHVDWTIVVKK.
A0A2W6MU15_9HELI/1-74             MKRFDLRHLKND....FLGRLEELITQELQVNEVGIFLLSV.....EDFENVQKSADIVKKTQNELLNSLRFNEVDWTIVVKR.
A7GW66_CAMC5/1-73                 MRRVDLRHLKDR....FLSALGETAR-NAQSGEVIVFLFEI.....GDFSGVKNAINLAYNLNCEVMNSLKFNQTDWTLIIKK.
A0A2P8R0Y8_9PROT/1-73             MKRYDLRHLGQD....FLTRMGEIIK-SSYNGEVMVFLFEI.....GDFSSVQKSANLVEGLNSTLMNSIKFNQVDWTIVVKK.
C8PF43_9PROT/1-73                 MKRYDLRHLGDK....FLNRMGEILK-NSARGETMIFMFEM.....GDFSAVQKSADLVEGLNSTLLSSIRYNQVDWMIVAKK.
A0A1B8J9N3_9HELI/1-74             MKRFDLRHLGGD....FYTRMGEVIDSALAPGEVGIFLFVV.....DDFANVSKSVEFASQKGCEIMNSVRFNHRDWTLVVRR.
A6Q1P7_NITSB/1-79                 MVRYDLRHLHEN....FYDRMLELLDKEVKSGEVAIFLFEVvvngkENFEAVQKSADVIKEAGHELLNSLKFNEVDWTIVVRK.
A0A7S7LZN4_9PROT/1-73             MKRYDLRHLKTE....YEPRMKEILG-EHKAGEVAIFLFEI.....GDFTPVQKSADLVKECGYELMNSLKFNEVDWTIVVKK.
A0A3G9HJ85_9PROT/1-74             MVRYDLRHLHDN....FYDRMMELLETGTEVDEVAIFLFEI.....GDFTPVQKSADLIKEAGHELLNSLKFNEVDWTIVVRR.
T0JFJ4_9PROT/1-73                 MKRYDLRHLKSE....FEPRMKEILE-THGAGEVAIFLFEI.....GDFSPIQKSADLVKKSGYELMNSLKFNEVDWTIVAKK.
E4TYF8_SULKY/1-74                 MKRYDLRHLKEN....FAGRMSEIIKNEAVSGEVVIFLFEI.....GDFSPVQQSADLVKELGCELMNSLKFNEADWTIVVKK.
S3XJR4_9PROT/1-73                 MKRYDLRHLKAN....FLTRMGELVK-SSQNGEVSQFIFEI.....GDFSSVEKSANLINGLNSTLLNSIKFNRSDWIITVKK.
A0A329ZUS8_9HELI/1-73             MKRYDLRHLKEN....FIPRMGEIID-GMQEGEVSIFMFEV.....GDFSPIQKSADFIQEKDCTMMNSLRFNEVDWTIVVKK.
A0A347VN22_9HELI/1-74             MKRFDLRPLKSD....FYDRMGELINNDLESGEVGIFLFEK.....GAHENVEKSALFIKEKGHILMNSLQFNHVDWTLVVKK.
A0A345J8N9_9PROT/1-74             MKRYDLRALKDN....FYNRMLELLKDDIKDGENAIFIFEI.....GDFTPIQKSADLLYENGYTLMNSIKFNEVDWTIVVKK.
A0A3D8IFJ4_9HELI/1-74             MKRFDLRHLKGN....FLDKLIEIINNNLSQDEVAIFIFEI.....NDFDDIQKSADLIKENNFTLMNSLRFNEVDWTLVVKK.
A0A2D3WAK7_9PROT/1-73             MQRYDLRHLGDD....FYGRMLEIID-ETSEGEVSIFMFEI.....GDFSAVQKSADAIKEAGWTLLNSLKFNETDWTIVVKK.
A0A6M0L6A6_9PROT/1-74             MQRYDLRHLRDN....FYDRMGELIDGGLKDGEVGIFLFEV.....GDFSSIQKSADFVKDMGHDLMNSMKFNEVDWTLVMKK.
A0A3D8I6K7_9HELI/1-74             MKRFDLRHLKSN....FYDKMGELIDTQLEHGEVGIFLFEK.....GEHENVAKSANYIQEKGHTLMNSLQFNHVDWTIVVRK.
#=GC seq_cons                     MKRaDLRHLKss....FhsRMtEllctphpsGEVuIFLFEl.....GDFoslQKSADhlcEpGapLMNSLKFNEVDWTIVVKK.
//