#=GF ID   NP_C_Orthomyx
#=GF AC   PF21422.1
#=GF DE   Orthomyxovirus nucleoprotein, C-terminal
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF AU   Chuguransky S;0000-0002-0520-0736
#=GF SE   ECOD:EF17552
#=GF GA   27.00 27.00;
#=GF TC   456.10 455.30;
#=GF NC   25.10 24.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP   Domain
#=GF RC   Paper describing PDB structure 4ewc
#=GF RN   [1]
#=GF RM   24068932
#=GF RT   The crystal structure and RNA-binding of an orthomyxovirus
#=GF RT   nucleoprotein.
#=GF RA   Zheng W, Olson J, Vakharia V, Tao YJ;
#=GF RL   PLoS Pathog. 2013;9:e1003624.
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This entry represents a domain found in the nucleoprotein from
#=GF CC   the orthomyxovirus Infectious salmon anemia virus [1]. This
#=GF CC   protein is similar to that in Influenza virus and consists of a
#=GF CC   head and a body domain [1]. This entry represents the tail loop
#=GF CC   which plays a role in oligomerisation. It folds into an extended
#=GF CC   beta-hairpin that protrudes into a deep pocket in a neighbouring
#=GF CC   subunit to mediate dimer formation.
#=GF SQ   2
#=GS D5LGG1_9ORTO/379-578  AC D5LGG1.1
#=GS NCAP_ISAV8/379-578    AC Q8V3T7.1
D5LGG1_9ORTO/379-578             TTKCFIPPISSLLMYIQDGNSVLAMDFMKNGEDACRICREAKLKVGVNGTFTMSVARTCVAVSMVATAFCSADIIENAVPGSERYRSNIKANTTKPKKDSTYTIQGLRLSNVKYEARPETSQSNTDRSWQVNVTDSFGGLAVFNQGAIREMLGDGTSETTSVNVRALVKRILKSASERSSRAVKTFMVGEQGKSAIVISG
NCAP_ISAV8/379-578               TTKCFIPPISSLMMYIQEGNSVLAMDFMKNGEDACKICREAKLKVGVNSTFTMSVARTCVAVSMVATAFCSADIIENAVPGSERYRSNIKANTTKPKKDSTYTIQGLRLSNVRYEARPETSQSNTDRSWQVNVTDSFGGLAVFNQGAIREMLGDGTSETTSVNVRALVKRILKSASERSARAVKTFMVGEQGKSAIVISG
#=GC seq_cons                    TTKCFIPPISSLhMYIQ-GNSVLAMDFMKNGEDAC+ICREAKLKVGVNuTFTMSVARTCVAVSMVATAFCSADIIENAVPGSERYRSNIKANTTKPKKDSTYTIQGLRLSNV+YEARPETSQSNTDRSWQVNVTDSFGGLAVFNQGAIREMLGDGTSETTSVNVRALVKRILKSASERSuRAVKTFMVGEQGKSAIVISG
//