#=GF ID Omega_Repress
#=GF AC PF07764.15
#=GF DE Omega Transcriptional Repressor
#=GF AU Finn RD;0000-0001-8626-2148
#=GF SE Pfam-B_63922 (release 14.0)
#=GF GA 25.00 25.00;
#=GF TC 25.00 30.60;
#=GF NC 24.40 24.00;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 75585367 --cpu 4 -E 1000 HMM pfamseq
#=GF TP Domain
#=GF CL CL0057
#=GF RN [1]
#=GF RM 11733997
#=GF RT Crystal structure of omega transcriptional repressor encoded by
#=GF RT Streptococcus pyogenes plasmid pSM19035 at 1.5 A resolution.
#=GF RA Murayama K, Orth P, de la Hoz AB, Alonso JC, Saenger W;
#=GF RL J Mol Biol 2001;314:789-796.
#=GF DR INTERPRO; IPR011686;
#=GF DR SCOP; 1irq; fa;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC The omega transcriptional repressor regulates expression of
#=GF CC involved in copy number control and stable maintenance of
#=GF CC plasmids. The omega protein belongs to the structural
#=GF CC superfamily of MetJ/Arc repressors featuring a
#=GF CC ribbon-helix-helix DNA-binding motif with the beta-ribbon
#=GF CC located in and recognising the major groove of operator DNA [1].
#=GF SQ 24
#=GS A0A1C0BV06_9FIRM/3-71 AC A0A1C0BV06.1
#=GS E6LIR8_ENTI1/3-71 AC E6LIR8.1
#=GS A0A6N4TPM6_9FIRM/1-69 AC A0A6N4TPM6.1
#=GS T0THM1_LACLC/5-66 AC T0THM1.1
#=GS S0KL21_9ENTE/1-70 AC S0KL21.1
#=GS A0A1L8RCC9_9ENTE/1-69 AC A0A1L8RCC9.1
#=GS A0A6N8U8L5_9FIRM/3-71 AC A0A6N8U8L5.1
#=GS I9G8Q6_9BACE/1-47 AC I9G8Q6.1
#=GS A0A7G9B7B3_9FIRM/3-72 AC A0A7G9B7B3.1
#=GS A0A1X9I6D5_9CAUD/1-69 AC A0A1X9I6D5.1
#=GS T0VBY9_9ENTE/1-69 AC T0VBY9.1
#=GS A0A377KRC3_9ENTE/1-69 AC A0A377KRC3.1
#=GS A0A429ZSD1_9ENTE/3-71 AC A0A429ZSD1.1
#=GS A0A7G3MJT1_9CAUD/1-69 AC A0A7G3MJT1.1
#=GS A0A3L8GCN8_STRIN/3-71 AC A0A3L8GCN8.1
#=GS K5ZCI1_9BACT/3-71 AC K5ZCI1.1
#=GS A0A3N0I4E4_9FIRM/3-71 AC A0A3N0I4E4.1
#=GS I3U5Z1_ENTFD/3-72 AC I3U5Z1.1
#=GS F7UWW3_EEGSY/3-71 AC F7UWW3.1
#=GS A0A3L8GBH7_STRIN/1-69 AC A0A3L8GBH7.1
#=GS A0A1M4XF52_9CLOT/1-70 AC A0A1M4XF52.1
#=GS A0A2K2UDI5_9ACTN/3-71 AC A0A2K2UDI5.1
#=GS E7G6X1_9FIRM/1-69 AC E7G6X1.1
#=GS A0A417PND7_9CLOT/3-71 AC A0A417PND7.1
A0A1C0BV06_9FIRM/3-71 ....VGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL..........
E6LIR8_ENTI1/3-71 ....VGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKKVMDQALEEYIRKYLPDKL..........
A0A6N4TPM6_9FIRM/1-69 ....MGNLGAQKEKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMEIRLRS----------klksvlilqy
T0THM1_LACLC/5-66 dfle-------KTGKKETPFEVKEKISQpTKLIKVDEDIHKDLKIYSARTGKNIKETAEQAIREFLE-------rn........
S0KL21_9ENTE/1-70 ....MGNLGAQKEKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMEIRLRSK---------lksvlivqyl
A0A1L8RCC9_9ENTE/1-69 ....MGNLGAQKDKRNDTPISTKKPNVE.DKTVRVRGDLHQIIKIDTAQNGGNVKEVMDRALEEYIRKYLPGKL..........
A0A6N8U8L5_9FIRM/3-71 ....VGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL..........
I9G8Q6_9BACE/1-47 ....----------------------MG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL..........
A0A7G9B7B3_9FIRM/3-72 ....VGNLGAQKEKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMEIRLRSK---------lksvlivhyl
A0A1X9I6D5_9CAUD/1-69 ....MGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL..........
T0VBY9_9ENTE/1-69 ....MGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL..........
A0A377KRC3_9ENTE/1-69 ....MGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL..........
A0A429ZSD1_9ENTE/3-71 ....VGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL..........
A0A7G3MJT1_9CAUD/1-69 ....MGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL..........
A0A3L8GCN8_STRIN/3-71 ....VGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL..........
K5ZCI1_9BACT/3-71 ....VGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL..........
A0A3N0I4E4_9FIRM/3-71 ....VGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL..........
I3U5Z1_ENTFD/3-72 ....VGNLGAQKEKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMEIRLRSK---------lksvlivqyl
F7UWW3_EEGSY/3-71 ....VGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL..........
A0A3L8GBH7_STRIN/1-69 ....MGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMEIRLRSK---------lksvlivqy.
A0A1M4XF52_9CLOT/1-70 ....MGNLGAQKEKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMEIRLRSK---------lksvlivhyl
A0A2K2UDI5_9ACTN/3-71 ....VGNLGAQKAKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL..........
E7G6X1_9FIRM/1-69 ....MGNLGAQKEKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMEIRLRS----------klksvlilqy
A0A417PND7_9CLOT/3-71 ....VGNLGAQKEKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMEIRLRS----------klksvlilqy
#=GC seq_cons ....hGNLGAQKsKRNDTPISAKKDIMG.DKTVRVRADLHHIIKIETAKNGGNVKEVMDpALEEYIRKYLPsKL..........
//
