#=GF ID   PAS_12
#=GF AC   PF18095.5
#=GF DE   UPF0242 C-terminal PAS-like domain
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Bateman A
#=GF GA   22.60 22.60;
#=GF TC   22.60 22.70;
#=GF NC   22.50 22.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP   Domain
#=GF WK   PAS domain
#=GF CL   CL0183
#=GF DR   INTERPRO; IPR040578;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This domain is found at the C-terminus of proteins of the
#=GF CC   UPF0242 family. This domain is related to the PAS domain
#=GF CC   Pfam:PF13426.
#=GF SQ   37
#=GS A0A0C1JYI3_9BACT/222-374  AC A0A0C1JYI3.1
#=GS A0A7L8V5R3_9PROT/276-375  AC A0A7L8V5R3.1
#=GS A0A0W7YCM5_9BACI/355-478  AC A0A0W7YCM5.1
#=GS A0A0N7Z3X4_9CYAN/98-196   AC A0A0N7Z3X4.1
#=GS W4PYL9_9BACI/70-220       AC W4PYL9.1
#=GS H5Y3N9_9FIRM/142-299      AC H5Y3N9.1
#=GS M4VQJ4_9PROT/41-131       AC M4VQJ4.1
#=GS Y616_CHLTR/266-417        AC O84621.1
#=GS A0A1Z4SH08_9NOSO/232-327  AC A0A1Z4SH08.1
#=GS A0A372LN85_9BACI/99-241   AC A0A372LN85.1
#=GS A0A6J4FX24_9PROT/455-573  AC A0A6J4FX24.1
#=GS A0A656K946_CHLPS/1-40     AC A0A656K946.1
#=GS F9ZJ59_9PROT/130-251      AC F9ZJ59.1
#=GS D6YT85_WADCW/230-381      AC D6YT85.1
#=GS Q6MEU1_PARUW/282-434      AC Q6MEU1.1
#=GS A0A1I6C9Z4_9BACI/117-262  AC A0A1I6C9Z4.1
#=GS A0A090E0C4_9BACT/251-403  AC A0A090E0C4.1
#=GS A0A4Q0XS90_9PROT/11-122   AC A0A4Q0XS90.1
#=GS A0A0U5JAE2_9BACT/289-441  AC A0A0U5JAE2.1
#=GS W0BEB6_9GAMM/36-175       AC W0BEB6.1
#=GS A0A4Z0QTC4_9FIRM/17-105   AC A0A4Z0QTC4.1
#=GS A0A1P8UIN6_9GAMM/175-288  AC A0A1P8UIN6.1
#=GS A0A1H8SMP4_9PROT/129-252  AC A0A1H8SMP4.1
#=GS A0A410JWT9_9BACT/2-146    AC A0A410JWT9.1
#=GS A0A1M5JZR6_9ALTE/6-121    AC A0A1M5JZR6.1
#=GS A0A656KBN4_CHLPS/1-98     AC A0A656KBN4.1
#=GS A0A1T2L7B9_9GAMM/370-486  AC A0A1T2L7B9.1
#=GS A0A8J7K784_9CYAN/424-526  AC A0A8J7K784.1
#=GS A0A212KW93_9CHLA/279-431  AC A0A212KW93.1
#=GS A0A0H5DSR8_9BACT/251-402  AC A0A0H5DSR8.1
#=GS F8L247_PARAV/249-401      AC F8L247.1
#=GS M1R5N2_9AQUI/158-287      AC M1R5N2.1
#=GS A0A431WEL5_9BACI/110-260  AC A0A431WEL5.1
#=GS A0A285ZTK7_9SPHI/1-98     AC A0A285ZTK7.1
#=GS A0A432LDQ3_9BACI/351-484  AC A0A432LDQ3.1
#=GS A0A1T5KQ33_9BACT/12-118   AC A0A1T5KQ33.1
#=GS A0A7D5RZE5_9BACT/234-386  AC A0A7D5RZE5.1
A0A0C1JYI3_9BACT/222-374             .....................................ns--MQANIQLKRCIDIA.QKIT..GASHYYN.T.SSRFK.DL...AV...DNYTL.D..LRRLFD.SLRA..ENA.SA..IIFYSQKENK..ILFVNNQSRSLLGWSPDKFV.QS.F.NE..IV.E.....PSK..D...I....WRQGI.ASLA....IKND.N....HI.....SLKMKSKAGA..QVEVHALLGII..PTGIFRYHVLGILY-s..............................................
A0A7L8V5R3_9PROT/276-375             ..........................ktrkelasfrtav----------------.----..-------.-.-----.--...--...-----.-..------.----..ENS.HN..VVVITDKQQK..IIYVNEAFEHITGYQAHEVL.GN.K.PN..IL.K.....SGL..Q...Dd.dfYKEMA.ITLE....NGNK.W....KG.....RFINKKKNGQ..-----------..---------------vfyedatitp.....................................
A0A0W7YCM5_9BACI/355-478             .........kieqiltinynitdkkkmftelkniertfr----------------.----..-------.-.-----.--...--...-----.-..------.-LIT..ENT.ND..LIVITNEDGI..ILYASPSYGIYLGYENEELL.GQ.FySD..ILdQ.....ESK..N...E....WQTFL.NNFT....GQPE.T....QF.....ELLLKAKDGT..PIWTEGNVTVV..---------------hdpe...........................................
A0A0N7Z3X4_9CYAN/98-196              .........................nylfvdqitpemld----------------.--IT..VRKAIEN.S.Q-TKR.DL...TQ...TRQALhD..QQRFLH.QLTE..AVP.GI..LYIYDLVERR..NVFINRQITDVLGYTPEQVQ.AL.G.SD..VL.-.....---..-...-....-----.----....----.-....--.....----------..-----------..---------------lkllhpdd.......................................
W4PYL9_9BACI/70-220                  ................................veflsre---------NKIITKV.MKIE..KTNHHRD.N.VYYFDgSF...PQ...KTRST.D..EFELFN.HLAE..S--.--..-VMITNKDGV..IIFVNQSFSDVTGYNRSEVI.GK.T.PK..IL.A.....SGY..H...N....HEFYI.NMWA....CIHD.Tg.swNG.....EIINKKKNGElfHELLSIDVVQD..ERGLITNYI------gtftd..........................................
H5Y3N9_9FIRM/142-299                 ...........eealreseaqiralneeleqrvnkrtme----------------.----..-------.L.EQANR.DL...LA...HSKKL.EesTRRLGMlSQAI..DNS.SI..SVVMTNKHKN..IVYANSQVANVTGYSIDELL.GQ.N.PR..IF.K.....SGHhsE...E....FYANIwATLD....KGLQ.W....SG.....EFCNKKKNG-..-----------..---------------aifwesstispvfntkgiltnyiav......................
M4VQJ4_9PROT/41-131                  ...............................clfwvpti----------------.----..----FSQ.V.RSRSN.KS...KT...EKESH.Q..RREFLE.KLFSslEE-.VA..IISVADQSGK..IIFANRQFCKISGYSVDELI.GQ.D.HR..IV.N.....SGY..H...-....-----.----....----.-....--.....----------..-----------..---------------psdffk.........................................
Y616_CHLTR/266-417                   ......................................v-VAQLVLEFRKIVFRV.ETTE..AADSLTA.L.RYTRT.DP...SA...HNYSL.A..CRQLFD.GLRE..ENL.GM..LFIYAPFAQR..VLFANALFNDWTGYGLEDFL.NR.E.SD..VV.L.....EGF..A...Q....WERDL.-LTE....SRVE.R....SG.....KIVIKTKAFG..ATPFYYCVVTL..DKGPFAQHILGVLYP...............................................
A0A1Z4SH08_9NOSO/232-327             snhqfsraidiriskmgdgfvaswrdvtekkqaeerlre----------------.----..-------.-.-----.--...--...-----.-..SQQFIE.RIAE..TTP.GI..LYVYDLAEQR..TVYINHQVSKLLGYTPEQIR.DM.G.NE..II.-.....---..-...-....-----.----....----.-....--.....----------..-----------..---------------pqlmh..........................................
A0A372LN85_9BACI/99-241              ....................drmkiqkcekyvrnvcylv----------------.----..-------.-.--FFE.DI...SP...QKKAE.E..QRRLAD.KIY-..ENI.SE..GVLFTDAKGR..ILYVNPAFQIVTGYTEDEAL.GN.T.PS..IL.Q.....SGL..H...Ne..qFYRDM.----....----.-....--.....----------..-----------..---------------wreigekgrwkgeiwnkrksgevfpewltissildeggaltnylavf
A0A6J4FX24_9PROT/455-573             ...........................srdngrvtrmvg----------------.----..-------.-.--TIT.DA...SQ...RRKAE.D..VLRLLS.TV-V..ENS.PL..AVIITDAAGR..IEYVNPRVVTLTGYNADEIL.GQ.R.PS..II.K.....SGF..TpesT....YNALW.QAIT....AGKE.W....QG.....ELLNRKKNGE..-----------..---------------lywediti.......................................
A0A656K946_CHLPS/1-40                .......................................----------------.----..-------.-.-----.--...--...-----.-..------.----..---.--..----------..--------------------.--.-.--..--.-.....---..-...-....-----.----....---E.R....SG.....KIIIKTKNHG..QIPFYYCLTVL..NKGPLHNHVLGVLYP...............................................
F9ZJ59_9PROT/130-251                 ....................qnisarkknelelqrmasv----------------.----..-------.-.-----.--...--...-----.-..------.---A..EKT.NG..IVMITDPERK..IIWINHSFEEILGYKAEEVM.GI.D.PA..AF.L.....QGT..E...T....SRATI.HEIA....RSLK.StgafSG.....EILNYTKSGE..KIWLYLNIAAV..H--------------ddlgklinyvav...................................
D6YT85_WADCW/230-381                 ......................................s-PEEASVLLGRCINIA.QKIT..TSNRF-N.S.NSRFH.HM...PL...DSSAL.D..FRRLYD.SLRS..ETS.SG..IIVYSLKENR..LIFANDQIEMIMGWNSETFT.RN.F.SE..II.R.....EGY..E...E....WNAAL.GQLS....PHTE.S....KA.....RMLFKTKNGQ..NILINCHLKII..PTGIFRHYVIGTLYP...............................................
Q6MEU1_PARUW/282-434                 ......................................t-TIEASALLKKCINMA.QKMT..GANYYNN.E.TTRYR.EF...ST...SNYAI.D..QRRLFD.NLKN..EEG.GL..IVVFSQKDQK..LLFANQQSKALLGWSADKLI.SD.F.AQ..II.Q.....EGL..N...E....WRRGL.AALT....TAAE.S....QI.....RLLAKNKNGQ..EVLLSCQLGII..PSGLFRSYVIAIFYP...............................................
A0A1I6C9Z4_9BACI/117-262             ............................slfeiikivep-----------LINLV.SKTI..I-NHYDDsLlTTRFAlDE...SN...EDLRI.T..LRELSD.LKKA..LNE.AT..IFAVTDKDDR..IIYANDKFCKITKYSKEELL.GQ.N.HS..IY.N.....SGY..H...Se.efFQEIL.RTIR....SGKV.W....KG.....EILNQAKDGT..-----------..---------------kywvdttfvpfvde.................................
A0A090E0C4_9BACT/251-403             ......................................t-EDEAKKLLKRCLDIA.QKIT..VSHHFTN.E.KSRFR.DL...PF...DNHGL.D..LRRLCD.SLRS..ETT.GA..VLVYSQKENR..ILFINNQIRALLGFGPDKFV.QD.F.EN..IV.Q.....GGL..N...E....WKSAI.AKMN....TLYE.A....EA.....SLVMKNKAGQ..DVLLRCQLGLI..PTGVFRNSAIGVFYN...............................................
A0A4Q0XS90_9PROT/11-122              ...............eklkqsnnelreivnnswdgigif----------------.----..-------.-.-----.--...--...-----.-..------.----..---.--..-----DKSSK..FIYVNNAFSPILGYKKEELL.QHtF.ES..FI.L.....DEY..K...E....AFRNL.LKANe..qNQYS.S....EV.....QVVCQRKDNQ..KVYLQITVSLM..---------------lnkeffvvsa.....................................
A0A0U5JAE2_9BACT/289-441             ......................................s-IPEATILLKKCITMA.QKLT..GANYYSN.E.ATRYR.EF...SS...SNYAI.D..QRRLFD.GLRN..EEG.GL..IVVYSQKEHK..LLFANHQSKALLGWSPDKFT.SD.F.SS..II.Q.....EGL..A...D....WKRGL.NTLS....SATE.S....QI.....RLLAKNKNGQ..EILLSCHLGIV..PSGLFRNYIIGVLYP...............................................
W0BEB6_9GAMM/36-175                  ................................wmrsiia-----------CLIIV.FSLT..TAHVWHQ.K.NSLKR.NL...KL...-----.A..L-KMFD.SLGN..---.--..GIVITNKQNK..IIYVNKKYTEITGYASEEVV.GK.N.PN..VL.S.....SGR..Q...N....K-EFY.EKMW....SILE.S....--.....----------..-----------..---------------kgywegeiwnrkksgelfpewinisiikdkrhtpayyvgvl......
A0A4Z0QTC4_9FIRM/17-105              ......................iqglrkvreqqflqqii----------------.----..-------.-.-----.--...--...-----.-..------.---D..NSS.DA..IFVIDKFG-N..VLFANAGAGKFMGYKAEELIgKN.V.ED..LL.K.....EGL..Y...D....WSPTM.KAIK....TRS-.-....--.....----------..-----------..---------------lvsgnvrnnrg....................................
A0A1P8UIN6_9GAMM/175-288             .............................lacdvargle----------------.----..-------.-.-----.--...--...---IL.A..VRRLRD.TLLD..HTP.TA..ITVI--RNRI..IVHANPAMGHLLGYPADHFT.GH.S.TR..LI.Y.....AGE..A...E....YQRV-.GKAY....ATLE.S....EGqvwvhRVRARHQNGQ..DLLLELH----..---------------grrldait.......................................
A0A1H8SMP4_9PROT/129-252             ...............................ivqnitar----------------.----..-------.-.-----.--...--...KNSEL.D..LQRMA-.-YVA..EKT.NG..IVMITDPEKK..IIWINNSFEEILGYRSEEVI.GL.D.PA..AF.L.....QGE..E...T....SAETI.REITrslrSSGT.F....SG.....EILNYTKSGE..KIWLYLNIAAVydDAGKLINYV------av.............................................
A0A410JWT9_9BACT/2-146               ..............................ntetvnnis----------------.----..--NLKTE.N.ESLRR.EL...AVlkrRYEDL.E..NRELET.SLLL..EEL.PL..GEIVLDKDAK..FIAYNTKFANLLGYSKEELIgKD.F.SV..VL.A.....EGL..E...Q....HAKTF.-PVF....RNVG.V....DI.....NLTW------..-----------..---------------kmrkkdgdvvttvlyakakfaksgnfvygrgyiv.............
A0A1M5JZR6_9ALTE/6-121               ..............................nllidqvfr----------------.----..-------.-.-----.--...--...-----.-..------.-LAA..EQS.RD..AILISDKDNQ..IIYVNNMFSQLTEYTEDDVI.GK.N.PS..IL.K.....SGI..Qt.dE....YYAQLwATIA....QKGE.W....RG.....ELWNRAKSGR..LFYEHQHIMAI.aDDSGATQYYISIFY-d..............................................
A0A656KBN4_CHLPS/1-98                .....................................mp--KQLLSELKKIAFKM.ENIE..VASSLTA.S.RYIRS.ES...SV...HNYSL.E..CRQLFD.SLRE..ENL.GM..LFVYTPQSQR..AVFANSLFKTWTGYGVEDFL.KM.D.ED..VV.V.....SG-..-...-....-----.----....----.-....--.....----------..-----------..---------------...............................................
A0A1T2L7B9_9GAMM/370-486             .....................terkameerlrfsasvfq----------------.----..-------.-.-----.--...--...-----.-..------.----..-NA.GD..GVMISDRNNR..ILDVNEAFTRITGYELEDVL.GE.D.PK..IL.Q.....SGQ..H...Dn.afYQLLW.SNLE....THGE.W....QG.....EIWDRNKEGE..VIPLNMTINVV..K--------------derdrlsnyva....................................
A0A8J7K784_9CYAN/424-526             ...........................sfenitarkyte----------------.----..-------.-.-----.--...--...--SQL.Q..QTQYFN.QQIA..ETVpGI..LFVYDLSEQR..VVYANHQVTDLLGYTPEQLK.AL.E.AD..VV.SllthpDDL..A...D....LRAYI.DSFN....SAPE.G....AI.....R---------..-----------..---------------aieyrs.........................................
A0A212KW93_9CHLA/279-431             ....................................spy---DASLQLEHCIELA.QNLE..GAAHLGV.G.SRRFG.DL...AV...ESRAL.D..LRRLAD.KFRS..EVS.AP..VLLFNPSDNH..LMFASNQIQGIVGWSPEKLV.KD.F.YQ..LL.Q.....DGR..N...E....WDHAV.SALS....QQEQ.V....QV.....RIVVKTKSGQ..DVMTYCHLGMI..RSGIFTQHVVGVLLP...............................................
A0A0H5DSR8_9BACT/251-402             .....................................nl--EDAKKQLRRCLDIA.QKIT..GSHYIRG.Q.AARFR.DM...A-...DHYAL.D..LRRLCD.SLRS..ENG.AA..VIVYSPRENR..LLFINNHVKTILGYSPEKFV.QD.F.ES..IV.Q.....EGM..G...D....WKKVV.GQLS....TLHE.A....KT.....SLVMKNKNNE..DVVVQCLLGMI..PTGVFKSHVMGVLY-h..............................................
F8L247_PARAV/249-401                 ......................................h-AEGASHQLKQCIEIV.QNIT..GVNHFSS.Q.SSLFR.DL...PV...NSNAL.D..LRRLGD.SLGS..ENM.AA..LAVYSKKEHK..LLYANHQIRHLLGWSSDKFL.QD.F.PE..IV.Q.....DGL..A...E....WKTQI.QGLS....SSHE.A....KI.....RLVMKTKFGE..NLLLNCHLGLI..PSGIFCNHVIAVFYP...............................................
M1R5N2_9AQUI/158-287                 .......................nffqeeerslleelal----------------.----..-------.-.-----.DI...GM...TLNAI.K..TRWLFQ.AVES..GLS.SYmdLFIMTDNDGK..ILYVGDKTLKVFGYDKGELL.GK.K.VD..IL.F.....SYL..F...N....YKDLL.EAIS....QAKE.Y....SS.....IVLFKTKQNK..NVYVDLAVVPI..A--------------nenfif.........................................
A0A431WEL5_9BACI/110-260             ................................elsiqsy------HKLIKAVETVyQTITkkVLEMYNE.E.MSFIK.HAleeSN...ENLKM.T..LRELAD.LERA..LNE.AT..IFAITDHEDK..VLYANDNFCHIYKYSREEIL.GK.K.HD..MF.S.....SNF..-...-....-----.----....----.-....--.....----------..-----------..---------------hpssffrhvwdtiesgevwkgeilnqakdgtkywldttiipfvdg..
A0A285ZTK7_9SPHI/1-98                ...................................mdid----------------.----..-------.-.-----.--...--...-KSSF.S..DLRLLI.NHEN..EKT.EH..NAIYSLTNQKgiILYANDKFCEVSGYAKEELI.GA.N.HN..IV.N.....SGL..H...-....-----.----....----.-....--.....----------..-----------..---------------skdffkemwrsvgkgniwqgeirnkakngs.................
A0A432LDQ3_9BACI/351-484             iiplldemghiqqymsvrynitqkkqmltelrniehmfr----------------.----..-------.-.-----.--...--...-----.-..------.-MIT..ENT.SD..LIVITNEDGI..ILYASNAYTTKLGYKDEELI.GQ.F.YTklLT.A.....ESR..E...I....WNTEI.YNIE....SKNN.S....KI.....ELIHKSKDGD..ISWCECNYTIV..N--------------dysr...........................................
A0A1T5KQ33_9BACT/12-118              ...............................kdigdisv----------------.----..-------.-.-----.--...--...-----.-..------.----..---.DG..IFVYSLHENK..VTYCNHMLSEIFGTTMENII.DR.P.IE..VL.K.....EAL..N...YdsnyLEEIL.QQLQ....SKYTlS....NV.....QMLI-NAAGK..SKYLTADIYYI..---------------edsgvvmsiikdi..................................
A0A7D5RZE5_9BACT/234-386             ......................................s-EDQATIQLKRCIDIA.QKIT..GANHYSS.S.NSRFK.DL...AI...DNYTL.D..LRRLFD.SLRM..ENA.ST..IXFYSXKENK..ILFVNNQAKNLLGWSPEKFI.LS.F.ND..IV.E.....PSR..E...I....WKQGI.ASLA....XKNT.S....QL.....DIKMKSKTGA..LIDVQALLGII..PTGIFRHYILGVLY-q..............................................
#=GC seq_cons                        ...........................................................................................th.p...pphhp.thhs..Ess.sh..lhlhopp-p+..llasNsphpplhGYss-cll.sp...ss..ll.p.....pGh..p...p....apthh.ttht....pt.p......ph.....plh.ppKsst.............................................................................
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