#=GF ID PI-TkoII_IV
#=GF AC PF18714.5
#=GF DE DNA polymerase II intein Domain IV
#=GF AU El-Gebali S;0000-0003-1378-5495
#=GF SE ECOD:EUF08478
#=GF GA 25.00 25.00;
#=GF TC 30.30 40.40;
#=GF NC 24.40 23.20;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 75585367 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF RN [1]
#=GF RM 16493661
#=GF RT Crystal structure of intein homing endonuclease II encoded in
#=GF RT DNA polymerase gene from hyperthermophilic archaeon Thermococcus
#=GF RT kodakaraensis strain KOD1.
#=GF RA Matsumura H, Takahashi H, Inoue T, Yamamoto T, Hashimoto H,
#=GF RA Nishioka M, Fujiwara S, Takagi M, Imanaka T, Kai Y;
#=GF RL Proteins. 2006;63:711-715.
#=GF RN [2]
#=GF RM 21914805
#=GF RT Structural and mutational studies of a hyperthermophilic intein
#=GF RT from DNA polymerase II of Pyrococcus abyssi.
#=GF RA Du Z, Liu J, Albracht CD, Hsu A, Chen W, Marieni MD, Colelli KM,
#=GF RA Williams JE, Reitter JN, Mills KV, Wang C;
#=GF RL J Biol Chem. 2011;286:38638-38648.
#=GF DR INTERPRO; IPR041005;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC This domain can be found in the hyperthermophilic archaeon
#=GF CC Thermococcus kodakaraensis Pol-2 intein. It is suggested to be a
#=GF CC potential DNA binding domain [1, 2].
#=GF SQ 3
#=GS DPOL_METJA/1006-1154 AC Q58295.2
#=GS DPOL_THEKO/975-1123 AC P77933.3
#=GS C6A2Y2_THESM/618-767 AC C6A2Y2.1
DPOL_METJA/1006-1154 KKLTCVDKEVVINIPKRLINADEEEIKDLVITK--HKDKAFFVKLKKTLEDIENNK--LKVIFDDCILYLKELGLIdyniikKINKVDIKILDEEKFKAYKKYFDTVIEHGNF--KKGRCNIQYIKIKDYIANIPDKEFEDCEIGAYSG-------kinall
DPOL_THEKO/975-1123 RRLELPERNHVLNLVELLLGTPEEETLDIVMTIPVKGKKNFFKGMLRTLRWIFGEE-KRPRTARRYLRHLEDLGYV......RLKKIGYEVLDWDSLKNYRRLYEALVENVRYNGNKREYLVEFNSIRDAVGIMPLKELKEWKIGTLNGFRMSPLI......
C6A2Y2_THESM/618-767 KKVKLNEKEVTINIPELILRLPDEATADIVMTIPVKGRKNFFKGMLRTLRWIFGEESKRIRTFNRYLFHLEKLGFV......KLLPRGYEVTDWEGLKIYKQLYEKLVESLRYNGNKREYLVMFNDIKDVISSFPQKELEEWKIGTLNGFRMDCIL......
#=GC seq_cons KKLcLsEKEVVINIPELLLssPEEETtDIVMTIPVKG+KNFFKGMLRTLRWIFGEE.KRhRTFcRYLhHLE-LGaV......KLpKlGYEVLDWEuLKsYK+LYEsLVEslRYNGNKREYLVpFNcIKDsIushPpKELEEWKIGTLNGFRMssll......
//