GenomeNet

Database: Pfam
Entry: PRD1_P5_C
LinkDB: PRD1_P5_C
Original site: PRD1_P5_C 
#=GF ID   PRD1_P5_C
#=GF AC   PF08949.14
#=GF DE   Bacteriophage PRD1, spike protein P5, C-terminal
#=GF PI   DUF1860;
#=GF AU   Mistry J;0000-0003-2479-5322
#=GF AU   Sammut SJ;0000-0003-4472-904X
#=GF SE   pdb_1w8x
#=GF GA   25.00 25.00;
#=GF TC   29.20 470.90;
#=GF NC   21.50 20.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP   Domain
#=GF CL   CL0100
#=GF RN   [1]
#=GF RM   15525981
#=GF RT   Insights into assembly from structural analysis of bacteriophage
#=GF RT   PRD1. 
#=GF RA   Abrescia NG, Cockburn JJ, Grimes JM, Sutton GC, Diprose JM,
#=GF RA   Butcher SJ, Fuller SD, San Martin C, Burnett RM, Stuart DI,
#=GF RA   Bamford DH, Bamford JK; 
#=GF RL   Nature. 2004;432:68-74.
#=GF RN   [2]
#=GF RM   10956048
#=GF RT   Assembly of bacteriophage PRD1 spike complex: role of the
#=GF RT   multidomain protein P5.
#=GF RA   Caldentey J, Tuma R, Bamford DH;
#=GF RL   Biochemistry. 2000;39:10566-10573.
#=GF DR   INTERPRO; IPR015044;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This domain is found at the C-terminal of bacteriophage PRD1
#=GF CC   spike protein P5. [1]. The spike structure of bacteriophage PRD1
#=GF CC   is comprised of proteins P2, P5, and P31. P5 is an elongated
#=GF CC   multidomain trimer. This C-terminal domain appears to contain
#=GF CC   the residues responsible for the trimerization of the protein
#=GF CC   [1,2].
#=GF SQ   2
#=GS P5_BPPRD/122-340      AC P22536.2
#=GS Q3T545_9VIRU/122-340  AC Q3T545.1
P5_BPPRD/122-340                 PSGIKGDKGDPGAPGPAGGTVVVEDSGASFGESLLDTTSEPGKILVKRISGGSGITVTDYGDQVEIEASGGGGGGGGVTDALSLMYSTSTGGPASIAANALTDFDLSGALTVNSVGTGLTKSAAGIQLAAGKSGLYQITMTVKNNTVTTGNYLLRVKYGSSDFVVACPASSLTAGGTISLLIYCNVLGVPSLDVLKFSLCNDGAALSNYIINITAAKIN
Q3T545_9VIRU/122-340             PSGIKGDKGDPGEPGPAGGTVVVEDSGALFGESLLDTTSEPGKILVKRISAGSGITVTDYGDEVEIEASGGGGGGGGVTDALSLMYSTSTGGPASIAANALTDFDLSGALTVNTVGTGLTKSAAGIQLAAGKSGLYQITMTVKNNTVTTGNYLLRVKYGSSDFVVACPASSLTAGGTISLLIYCNVLGVPSLDVLKFSLCNDGAALSNYIINITAAKIN
#=GC seq_cons                    PSGIKGDKGDPGtPGPAGGTVVVEDSGA.FGESLLDTTSEPGKILVKRISuGSGITVTDYGDpVEIEASGGGGGGGGVTDALSLMYSTSTGGPASIAANALTDFDLSGALTVNoVGTGLTKSAAGIQLAAGKSGLYQITMTVKNNTVTTGNYLLRVKYGSSDFVVACPASSLTAGGTISLLIYCNVLGVPSLDVLKFSLCNDGAALSNYIINITAAKIN
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