#=GF ID Pathogen_betaC1
#=GF AC PF09593.14
#=GF DE Beta-satellite pathogenicity beta C1 protein
#=GF PI Phage_C1;
#=GF AU Coggill P;0000-0001-5731-1588
#=GF SE Pfam-B_991 (release 21.0)
#=GF GA 25.00 25.00;
#=GF TC 46.80 46.60;
#=GF NC 19.90 19.30;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP Domain
#=GF RN [1]
#=GF RM 11437658
#=GF RT Identification of dna components required for induction of
#=GF RT cotton leaf curl disease.
#=GF RA Briddon RW, Mansoor S, Bedford ID, Pinner MS, Saunders K,
#=GF RA Stanley J, Zafar Y, Malik KA, Markham PG;
#=GF RL Virology. 2001;285:234-243.
#=GF RN [2]
#=GF RM 14551819
#=GF RT Cotton leaf curl disease is associated with multiple monopartite
#=GF RT begomoviruses supported by single DNA beta.
#=GF RA Mansoor S, Briddon RW, Bull SE, Bedford ID, Bashir A, Hussain M,
#=GF RA Saeed M, Zafar Y, Malik KA, Fauquet C, Markham PG;
#=GF RL Arch Virol. 2003;148:1969-1986.
#=GF RN [3]
#=GF RM 17872543
#=GF RT A monopartite begomovirus-associated DNA beta satellite
#=GF RT substitutes for the DNA B of a bipartite begomovirus to permit
#=GF RT systemic infection.
#=GF RA Saeed M, Zafar Y, Randles JW, Rezaian MA;
#=GF RL J Gen Virol. 2007;88:2881-2889.
#=GF DR INTERPRO; IPR018583;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC Cotton leaf-curl disease - CLCuD - is of major economic
#=GF CC importance in cotton-growing areas of the far-east. The
#=GF CC infectious agent appears to be a single-stranded DNA molecule of
#=GF CC approx 1350 nucleotides in length, which, when inoculated with
#=GF CC the Begomovirus into cotton, induces symptoms typical of CLCuD.
#=GF CC This molecule requires the Begomovirus for replication and
#=GF CC encapsidation [1]. DNA beta encodes a single protein, betaC1.
#=GF CC The intracellular distribution of betaC1 is consistent with the
#=GF CC hypothesis that it has a role in transporting the DNA A of
#=GF CC Begomovirus from the nuclear site of replication to the
#=GF CC plasmodesmatal exit sites of the infected cell. The DNA
#=GF CC beta-encoded protein, betaC1, is the determinant of both
#=GF CC pathogenicity and suppression of gene silencing [3].
#=GF SQ 43
#=GS C9XIB2_9VIRU/20-104 AC C9XIB2.1
#=GS I3QBA1_9VIRU/2-117 AC I3QBA1.1
#=GS A7M6K4_9VIRU/2-116 AC A7M6K4.1
#=GS A9QXD0_9VIRU/2-116 AC A9QXD0.1
#=GS E5Q3H4_9VIRU/2-117 AC E5Q3H4.1
#=GS A0A224AXT8_9VIRU/2-118 AC A0A224AXT8.1
#=GS Q2VU50_9VIRU/2-89 AC Q2VU50.1
#=GS Q7T476_9VIRU/33-149 AC Q7T476.1
#=GS A0A0M4ARA7_9VIRU/2-118 AC A0A0M4ARA7.1
#=GS E7BNB1_9VIRU/2-118 AC E7BNB1.1
#=GS A7LIE3_9VIRU/2-117 AC A7LIE3.1
#=GS Q4VZ15_9VIRU/2-118 AC Q4VZ15.1
#=GS A0A1P8JPQ3_9VIRU/2-118 AC A0A1P8JPQ3.1
#=GS A5H1F9_9VIRU/2-120 AC A5H1F9.1
#=GS Q2PWY3_9VIRU/2-118 AC Q2PWY3.1
#=GS D3HTY4_9VIRU/2-118 AC D3HTY4.1
#=GS A9NJ54_9VIRU/2-118 AC A9NJ54.1
#=GS C3VIY0_9VIRU/5-119 AC C3VIY0.1
#=GS A0A0M4ARL0_9VIRU/33-149 AC A0A0M4ARL0.1
#=GS A4F1V1_9VIRU/2-116 AC A4F1V1.1
#=GS Q68V41_9VIRU/2-118 AC Q68V41.1
#=GS Q7T471_9VIRU/2-117 AC Q7T471.1
#=GS Q2PAY5_9VIRU/2-118 AC Q2PAY5.1
#=GS A0A0U1VML0_9VIRU/2-118 AC A0A0U1VML0.1
#=GS Q8AYW8_9VIRU/2-116 AC Q8AYW8.1
#=GS A9YRY2_9VIRU/2-118 AC A9YRY2.1
#=GS K4JBA9_9VIRU/13-128 AC K4JBA9.1
#=GS G1C5E5_9VIRU/14-129 AC G1C5E5.1
#=GS Q8JJD6_9VIRU/2-117 AC Q8JJD6.1
#=GS Q2WCL1_9VIRU/2-118 AC Q2WCL1.1
#=GS E3U9R6_9VIRU/2-118 AC E3U9R6.1
#=GS A0A1L4AB17_9VIRU/3-117 AC A0A1L4AB17.1
#=GS A5H1F4_9VIRU/6-122 AC A5H1F4.1
#=GS E7BNB9_9VIRU/2-118 AC E7BNB9.1
#=GS M1KJU3_9VIRU/2-118 AC M1KJU3.1
#=GS A0A2U8UW19_9VIRU/2-118 AC A0A2U8UW19.1
#=GS Q70UF1_9VIRU/2-118 AC Q70UF1.1
#=GS C9DRK0_9VIRU/2-118 AC C9DRK0.1
#=GS B0JEU4_9VIRU/3-117 AC B0JEU4.1
#=GS E7BND2_9VIRU/24-140 AC E7BND2.1
#=GS Q911I3_9VIRU/2-118 AC Q911I3.1
#=GS Q7T470_9VIRU/2-116 AC Q7T470.1
#=GS X2J0V8_9VIRU/2-118 AC X2J0V8.1
C9XIB2_9VIRU/20-104 .......TIKHTTNKGIKFTIDAKLNE--CFKIIVQVTRTNRNIITKHTYTMYYGYGAILVP....FDFNGLETQIRNTIEVMFHD--IDHFKPEDMI------------------------------gg............
I3QBA1_9VIRU/2-117 .......TINYRNSKGVEFKIEVHLIT-ETVRCIIRVATTREPNMMNRRFIIPYSYDQIIAP....FDFNGTEEEIKTALINRYRDTGYSAIREEDIVEIVDMVIAENTGLHGLQIIEPYQFRQNFG-v.............
A7M6K4_9VIRU/2-116 .......TITYNNGKGIKFIVDVRLHQ--LLKVIVQVYSTNKPVLTGFKCHIPYTYVQMVPP....FDFNGAEELIRETLELMYEDSDISNFKQEEMIDSIDMVMMHWLGHMGVDTVDRYTIRCRNTV..............
A9QXD0_9VIRU/2-116 .......TIKYVNRNGLMFIINVRLKGDDSIKVHIQLTSTRSPALVKRKFVIPYGHNGLIPP....FDFNNLEEGIRNILTIMYRDTMFDEFKHEDMTELIDMLIMTEAPVV----------------isgfddmmfvlcvc
E5Q3H4_9VIRU/2-117 .......TITYKNNRGVTFKINVYLQE-ARINCDIQVTANKEAYVSTSTYNIPYSFEEVIIP....FDFNGTEEQIANAIAQIFNGLHYREMRQEDIVEAIDMIMAENENVLGIQIIEPHRVKIKISV..............
A0A224AXT8_9VIRU/2-118 .......TRSGTNKQGVRFTVDVRIMENMKIFIHMRLVSTKSPALSTYEGIVKYTYENMHVP....FDFNGFEGNIIANFLFAYNGAKIEEIEIEDIVQRLDIIVLENPEILGMDVIEPYVFNKKFTV..............
Q2VU50_9VIRU/2-89 .......TRSGTNKQGVKFTVDVRIMENMKIFIHIRIVSTMSPALIRYEGIVKYTYGDMHVP....FDFNGFEGNIIANFLFANNGAKIEEIEIEDIVQ-----------------------------..............
Q7T476_9VIRU/33-149 .......TIKYNNEKGMEFRIDVKINEDNSILVLVELCSTRSPALAKKTFMIPYGHDGIIPP....FDFNILEEGIHNILKVMYKDSRIGEFRQEDMVETIDMLMMHEASVIDIRIADEYDVCTNVCV..............
A0A0M4ARA7_9VIRU/2-118 .......TRSGTTKEAVRFTVDVRIMENMKIFIHMSLVSTKSPAIIKYEGIVKYTYGDMHVP....FDFNGFEGNIIANFLFAYNGAKIQEIEIEDIVQRLDIIVLENPEILGMDVIEPYVFNKKFTV..............
E7BNB1_9VIRU/2-118 .......TRFSKNREGIVFKVDVRLMQQQRISVHMQISSTRSPAISTRTFIIDYTYQQLHIP....FDFNGLEGTITSTFKFHYWGSIAEEILDEDVIHMTDIITTENEDIMGMDVNPPVTIDNKII-i.............
A7LIE3_9VIRU/2-117 .......TITFRSTKGVHFRVDVFLKD-DHIDCRIEVTATKEAYLRKSTFIIPYNFADVFIP....FDFNGSEEEIMNGLKNMFKDTTHQMIKTEELVEVVDMIMAENLNILGMELINHYRIINKSSV..............
Q4VZ15_9VIRU/2-118 .......TISYTNDKGMLFIINVKFRSEIKFRVDVEVFSTKSPALVKNKFSIPYGHNGIIPP....FNFNALEEGIKNILRIMYRDSTIEEFKSEDMVEIIDIMMQEEAPVIDIQVNDEYHVYKNVTV..............
A0A1P8JPQ3_9VIRU/2-118 .......TIEYRNNKGLGFIIDVRRQGAKFVMVKIRFSSTRSPALIKRRINIPYGHDGIIIP....FDFNGLETGIRDMIETLFKDTAMEEFRVEEMIEMIDLLMMQDANVENINLDVEYDVTNNTS-a.............
A5H1F9_9VIRU/2-120 .......TIRYQTSKNIHFTIDVHLKN--RVTVTIRLIYTRSPVMTAITYNIPYTAEENIPPpiitSERDGAEDHIHHILYAIYDDVDIKDFKPEMMLDAVDIMMMDRFDHIGIDTDGSCRIRTIHNV..............
Q2PWY3_9VIRU/2-118 .......TRSGTNKQGVRFTVDVRIMEDMKIFIHMRLISTKSPALIKYEGIIKYTYGDIQVP....FDFNGFEGNIIANFLFAYYGANIEEIELEDIVQRLDIIVLENPEILGMDVIEPYVFNKKFTV..............
D3HTY4_9VIRU/2-118 .......TTSGTNKEGVRFIVDVRIMENMKIFIHMRILSTKSPSLIKYEGIVQYTYEDIHVP....FDFNGFEGSIIANFLFAYNGAKIEEIEIEDIVHRLDILVLENPEILGMDVIEPYIFNKKFTV..............
A9NJ54_9VIRU/2-118 .......TIKYNNKRGMEFTIDVKINEDNSILVHIELFSTQSPALVKKNFMIPYGHDGIIPP....FDFNALEEGIQNLLQIMYKDSDIGEFRQEDMVETIDLLMMEEAPLVDIRIGDEYDVCTKVCV..............
C3VIY0_9VIRU/5-119 .......TITYKNTKGVKFIIDVRLCP--RLNVQVTMISTKEPILSKATYTLPYNHNEIEEP....FDFNGTEEAIRNTIQVMVHDIPFNDIKSEDILDSIDITMMDRFVFIDLDTGGTCKTRCICT-l.............
A0A0M4ARL0_9VIRU/33-149 .......TRSGTNKQGVKFTVDVRIMENMKIFIHIRIISTMSPALIKYEGIVKYTYGDMQVP....FDFNGFEGNIIANFLFANNGAKIEEIEIEDIVQRLDILVLENPEILGMDVIEPYVFNKKFTV..............
A4F1V1_9VIRU/2-116 .......TIIYNNGKGIKFIIDVRLQQ--FIRVQVQVYSTNQPVLTGIRCNIPYTYVHMNPP....FDFNGTEELVRDTLELMYDESDISNFKQEEMIDSIDIVMMHWLSDMGVDTVDKYVVRNRYTV..............
Q68V41_9VIRU/2-118 .......TIKYTTTKGLSFIINVRLRSDREISTEIQFFSTRTPFLQKQHFRIPYTHQGTIAP....FDFNALEEGIKNLLRLMYRDSPQADFRYEDMIEAIDILMMQEAPVLDINLGEEYQVYSSTT-m.............
Q7T471_9VIRU/2-117 .......TITLRNTKGVHFRVDVFLKD-DHIDCKIEVTATKESYLRKSTFIIPYHFADVFIP....FDFNGSEEEIMHGLRNMFKDTTHQMIRTEELVDVVDMVMAENVNVLGMELINHYRIINKSSV..............
Q2PAY5_9VIRU/2-118 .......TIKYTTRKGLSFIINVRLEPHREVSTEIQFYSTKTPFLQKQYFRIPYTHQGIITP....FNFNALEEGIKNLIHIMYTDSHHEDFRYEDLIEAIDILMMHEAPVLHINLGEEYQVYSSTT-m.............
A0A0U1VML0_9VIRU/2-118 .......TRSGTNKQGVRFTVDVRIMEGMKIFIHMRLVSTKSPALIKYEGIVKYTYGDMHVP....FDFNGFEGNIIANFLFAYNGAKIQEIEIEDIVQRLDIIVLENPEILGMDVIEPYTFNKKFTV..............
Q8AYW8_9VIRU/2-116 .......TITYNNGWGLKFIIDVRLQP--TLRVMVKVFSTNQPVMSCYNCTIPYTYVEIQPP....FDFNGTEEAIKNRLEVMYRESNIFDFKEEEMLDTIDDLMLDTFNHIGIDTLGHCFIRCKYAV..............
A9YRY2_9VIRU/2-118 .......TRSGTTKEAVRFTVDVRIMENMKIFIHMSLVSTKSPAIIKYEGIVKYTYGDMHVP....FDFNGFEGNIIANFLFAYNGAKIQEIEIEDIVQRLDIIVLENPEILGMDVIEPYVFNKKFTV..............
K4JBA9_9VIRU/13-128 .......TIRYTNKKGLSFIIDVRLRGPNFVLVKIQFFSNRAPALIRRRFSIPYGHDGIIVP....FDFNGLEEGIQTTLEVMYKDATYEEFKREEMVEMIDIIMLQEARVRNINLDVNYD-------dsgnss........
G1C5E5_9VIRU/14-129 .......TITHTTNKGIRFVFSLQKKQ-EHFLVTVKVINTSSPVLSKHTYKIRYDYQWNAVP....FDFNGLETSMKNTIEVLYHDSSYNDFKEENMIDAIDTIMFDTNMILGVEIIEPHTCTT----srii..........
Q8JJD6_9VIRU/2-117 .......TITLRNTKGVHFRVDVFLKD-DHIDCKIEVTATKESYLRKSTFIIPYHFADVFIP....FDFNGSEEEIMHGLRNMFKDTTHQMIRTEELVDVVDMVMAENVNVLGMELINHYRIINKSSV..............
Q2WCL1_9VIRU/2-118 .......TIKYSNKKGMKFNIDVRLKEDDSILVQIRLFSTRSQALTRRDIHIPYAYGRIIAP....FDFNSLEEGIKNIIDSMYRDSGINEFRQEDLVEAVDILMIQQAPVEDIDLVIGYDVYTHSSV..............
E3U9R6_9VIRU/2-118 .......TIKYNNEKGMEFSIDVKITEDNSILVRIELCSTRSAALAKKTFTIPYGHDGMIPP....FNFNNLEEGIHNILKVMYRDCHIGEFRQEDMVEAIDMMMMHEAPVIDIRIGDEYDVCTTVCV..............
A0A1L4AB17_9VIRU/3-117 htattlt--------MIKFTTNTTLPSPNICIIKLEITSANQPYLVKHKISIPYTYRDIITP....FDLQGNDTLISLALRFAFNAKEYGELKIEDIIELVDLMVLQNDSFVDIDVEASYTNRR----tit...........
A5H1F4_9VIRU/6-122 .......TIQYRNKKGLRFMIDVRLQGERFVMVKIRFSSTRAPALIKRRFNIPYGHDGIIAP....FDFNGLETEIKDMMEILFKDASLETFKPEEMVQTIDIIMMHEANVMDINLDVDYDVANNV--ga............
E7BNB9_9VIRU/2-118 .......TRFSRTREGIVIREDVRDKQQQRASVHKYISSAKWSSHITKAFIVDYAYQQLHIP....FDFTGVEGEITSTFKFHYWGSKAEEILEEDIIHVVDIIIMENPDIMVMEVNEPVIIDSNII-i.............
M1KJU3_9VIRU/2-118 .......TISYSNSKGMIFIINIKFRSEIQFTVEVEVFSTKSPALVKHKFSIPYGHNGIIPP....FNFNALEEGIKNLLRIMYRDSTIEEFKSEDMVEIIDMMIQQEAPVIDIQVNDEYHVYKNVTV..............
A0A2U8UW19_9VIRU/2-118 .......TIKYNNKNGLEFTIDVRLEEHTSFIVQVKIWSTRAPALAKKKFMIPYRHNGIVAP....VDFNSLEEGIKHCIKIMYKNSTIWEFKQEDMIDVIDMLMMEEAPVEDMDVGDEYDVIIG---ssv...........
Q70UF1_9VIRU/2-118 .......TIKYSNKKGMSFIIDVRLRTTRRVSVEIDLFSTTTPFLHKQRYIIPYGHQGLIGP....FDFNGLEESIKNIFKVMYEDSPTGGFKAEDMIELVDILMMQEAHVIEINLDEEYKVSKHTSV..............
C9DRK0_9VIRU/2-118 .......TIKYNNKKGMEFIIDVKLKEDDSIIVQVKLFSTKSPTLARQKFNIPYDHSGFIPP....FDFNSLEEGIKEIIQHMYEESTIKDFKQENIVEAIDILMMHEAPVIDINLDRGYDVYGSVSV..............
B0JEU4_9VIRU/3-117 ....itk--KTSSGKLLQLSVNVF---DSKFIVLLHITDTKSPQIQLQKIKLPYSFNSDDLL....INVTGLEEELMQHLSLICDEHVPSKVYTDYLISAIDILILENSQELGLQVLEPCVVTITYTV..............
E7BND2_9VIRU/24-140 .......TRFSKNREGIVFKVDVRLMQQQRISVQMQISSTRSPAISTKTFIIDYTYQQLHIP....FDFNGLEGTITSTFKFHYWGSKAEEILEEDIIHMVDIIIIENPEIMGMDVNEPVTIDNKII-i.............
Q911I3_9VIRU/2-118 .......TTSGTNKEGVRFIVDVRIMKNMKIFIHMRILSTKSPSLIKYEGIVQYTYEDIHVP....FDFNGFEGSIIANFLFAYNEAKIEEIEIEDIVHRLDILVLENPEILGMDVNEPYVFNKKFTV..............
Q7T470_9VIRU/2-116 .......TIIYNNGNGIKFIIDVRLQQ--FIRVQVQVYSTNQPVLTGIRCNIPYTYVQMVPP....FDFNGTEELVRDTLELMYDDSDISNFKQEEMIDSIDMVMMHWLSDMGVDTVDRYVVRNTYTV..............
X2J0V8_9VIRU/2-118 .......TIRYKNTKGVSFVINVRLRKENSISVEIDLFSQKTPYLHKQQFVIPYSHQGIITP....FNFNDLEEGIKGLMNVMYAESPADEFRHEDMIEAIDILMMQEAHVIDINLGDKFNMNSCT--si............
#=GC seq_cons .......TIpasNp+GlcFhlDVRlppp.plhlclclhST+oPsLhKpcahIPYsasslhsP....FDFNGhE-sIpsslphhYc-uphp-h+pEDhl-tlDllhhcpssllshclh-.YplppphsV..............
//
