#=GF ID   Peptidase_C31
#=GF AC   PF05410.17
#=GF DE   Porcine arterivirus-type cysteine proteinase alpha
#=GF AU   Studholme DJ;0000-0002-3010-6637
#=GF SE   Manual
#=GF GA   25.00 25.00;
#=GF TC   26.30 87.00;
#=GF NC   23.20 18.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0125
#=GF RN   [1]
#=GF RM   10725411
#=GF RT   Virus-encoded proteinases and proteolytic processing in the
#=GF RT   Nidovirales. 
#=GF RA   Ziebuhr J, Snijder EJ, Gorbalenya AE; 
#=GF RL   J Gen Virol 2000;81:853-879.
#=GF DR   INTERPRO; IPR008741;
#=GF DR   MEROPS; C31;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   Corresponds to Merops family C31. These peptidases are involved
#=GF CC   in viral polyprotein processing in replication.
#=GF SQ   10
#=GS A0A0B5JKI4_9NIDO/61-164  AC A0A0B5JKI4.1
#=GS A0A0B5JQL5_9NIDO/79-182  AC A0A0B5JQL5.1
#=GS A0A1Z2RX52_9NIDO/54-153  AC A0A1Z2RX52.1
#=GS A0A1Z2RX77_9NIDO/54-153  AC A0A1Z2RX77.1
#=GS RPOA_PRRSL/57-161        AC Q04561.3
#=GS RPOTF_PRRSL/57-161       AC P0DJZ9.1
#=GS A0A2H4MWN4_9NIDO/57-161  AC A0A2H4MWN4.1
#=GS A0A6B9PQ75_9NIDO/57-161  AC A0A6B9PQ75.1
#=GS Q9ENK6_PRRSV/57-161      AC Q9ENK6.1
#=GS RPOA_PRRSB/57-161        AC Q8B912.3
A0A0B5JKI4_9NIDO/61-164             lppwansgvnpsd---------------ISGHCWLGAIFPIARSTAGNGgSFLHRLATVATACYLEGCLSAAALERLRVYEYSCRWFACDGPIPGVAVYANAWHVSESWFTEATHVLSN
#=GR A0A0B5JKI4_9NIDO/61-164  pAS   ................................*......................................................................*...............
A0A0B5JQL5_9NIDO/79-182             lppwansgvnpsd---------------ISGHCWLGAIFPIARSTAGNGgSFLHRLATVATACYLEGCLSAAALERLRVYEYSCRWFACDGPIPGVAVYANAWHVSESWFTEATHVLSN
#=GR A0A0B5JQL5_9NIDO/79-182  pAS   ................................*......................................................................*...............
A0A1Z2RX52_9NIDO/54-153             .........rfln---------PSKMRRKADLCWLSAIFPLARSTSGNF.NFRPRIRTVAEFLFNQWEFNIIAWDKLECYAKGMKIFPCVGPVPGVALYFNRAHCSDRYFPGAMWVTTN
#=GR A0A1Z2RX52_9NIDO/54-153  pAS   ................................*......................................................................*...............
A0A1Z2RX77_9NIDO/54-153             .........rfln---------PSKMRRKADLCWLSAIFPLARSTSGNF.NFRPRIRTVAEFLFNQWEFNIIAWDKLECYAKGMKIFPCVGPVPGVALYFNRAHCSDRYFPGAMWVTTN
#=GR A0A1Z2RX77_9NIDO/54-153  pAS   ................................*......................................................................*...............
RPOA_PRRSL/57-161                   .............LHWKVPIGIPQVECTPSGCCWLSAVFPLARMTSGNH.NFLQRLVKVADVLYRDGCLAPRHLRELQVYERGCNWYPITGPVPGMGLFANSMHVSDQPFPGATHVLTN
#=GR RPOA_PRRSL/57-161        AS    ................................*......................................................................*...............
RPOTF_PRRSL/57-161                  .............LHWKVPIGIPQVECTPSGCCWLSAVFPLARMTSGNH.NFLQRLVKVADVLYRDGCLAPRHLRELQVYERGCNWYPITGPVPGMGLFANSMHVSDQPFPGATHVLTN
#=GR RPOTF_PRRSL/57-161       pAS   ................................*......................................................................*...............
A0A2H4MWN4_9NIDO/57-161             .............LPWTLPQGYPTSECSPAGCCWLAAIFPLARMTSGNS.NFERRMEIVASTLYRDGVLKSRHLDSLQVYDRGCSWYPITGPVPGVAVYANSMHVSDAPFPGATHVLTN
#=GR A0A2H4MWN4_9NIDO/57-161  pAS   ................................*......................................................................*...............
A0A6B9PQ75_9NIDO/57-161             ............i-SWTCPQGWPTPECSPAGCCWLAAIFPIARMTSGNG.NFQQRMEHVAQVIYSTSKQNPHVLNRLQVYDRGCDWFPIVGPVPGVAVYANSMHVSDTPFPGATHVLTN
#=GR A0A6B9PQ75_9NIDO/57-161  pAS   ................................*......................................................................*...............
Q9ENK6_PRRSV/57-161                 .............LRWTLPRAFPTVECSPAGACWLSAIFPIARMTSGNL.NFQQRMVRVAAELYRAGQLTPAVLKALQVYERGCRWYPIVGPVPGVAVFANSLHVSDKPFPGATHVLTN
#=GR Q9ENK6_PRRSV/57-161      pAS   ................................*......................................................................*...............
RPOA_PRRSB/57-161                   .............LRWTLPRAFPTVECSPTGACWLSAIFPIARMTSGNL.NFQQRMVRVAGEIYRAGQLTPTVLKTIQVYERGCRWYPIVGPVPGVGVYANSLHVSDKPFPGATHVLTN
#=GR RPOA_PRRSB/57-161        pAS   ................................*......................................................................*...............
#=GC seq_cons                       ...............WphP.uhPosECoPuGsCWLSAIFPlARMTSGNt.NFppRlspVAssLYpsGpLsstsLccLQVYERGC+WaPIsGPVPGVAVYANShHVSDpPFPGATHVLTN
//