#=GF ID   Peptidase_C62
#=GF AC   PF12380.12
#=GF DE   Gill-associated viral 3C-like peptidase
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   MEROPS_C62.001
#=GF GA   19.20 19.20;
#=GF TC   19.30 19.60;
#=GF NC   19.00 18.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 --cpu 4 -E 1000 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0124
#=GF RN   [1]
#=GF RM   12502857
#=GF RT   The 3C-like proteinase of an invertebrate nidovirus links
#=GF RT   coronavirus and potyvirus homologs.
#=GF RA   Ziebuhr J, Bayer S, Cowley JA, Gorbalenya AE;
#=GF RL   J Virol. 2003;77:1415-1426.
#=GF DR   INTERPRO; IPR024348;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   a positive-stranded RNA virus of prawns, that has been called
#=GF CC   yellow head virus protease and gill-associated virus 3C-like
#=GF CC   peptidase. The GAV cysteine protease is predicted to be the key
#=GF CC   enzyme in the processing of the GAV replicase polyprotein
#=GF CC   precursors, pp1a and pp1ab. This protease employs a
#=GF CC   Cys(2968)-His(2879) catalytic dyad.
#=GF SQ   7
#=GS B3U1H5_YHV/2834-3117        AC B3U1H5.1
#=GS A0A650BL21_9NIDO/2116-2352  AC A0A650BL21.1
#=GS Q9IHZ8_GAVAU/2823-3106      AC Q9IHZ8.1
#=GS A0A1L3KIX8_9NIDO/2087-2230  AC A0A1L3KIX8.1
#=GS Q9WPZ7_GAVAU/2823-3106      AC Q9WPZ7.3
#=GS A0A650BL51_9NIDO/2116-2353  AC A0A650BL51.1
#=GS B3U1H4_YHV/2834-3117        AC B3U1H4.1
B3U1H5_YHV/2834-3117                   ...........FLVGLVTHEVNTGNNTRVEDLNKHPYNKYRSNIVRVYGERGDLNGFLSGKFLYFPRHIFDSCTDN.TLTRHIRVTKGEGTHD......IELLSEEYDA.....TPFIKTDSPFAEATVLKFGKLQRTQYAYFV..TADDIRVGSMSADGYHNISTKDGDCGSLLFDHLH..NVVGAHIVGIASIPPVNGALTWNAEKEMLCGPNDDYDYDPEKVGPPKVWPVESITALSTILNQLNYVTGDAFTTPKLPTNYQLIGCETLDQYVNARNLVTGQFPQIKEALDDFINGYVANLQRGTEAYN.............................................................
A0A650BL21_9NIDO/2116-2352             elevqrhlqqy-----------------------------------TYKNNTTLLGFTSGDKLYLQRHIFGRVEDDvALQKEIAEKIKNGTFQnelptpFKILSVEPSDnkmyyTFLIDAEFPEFEFGKSEYGNATLVGKDFKT..GKNVIQKTAMTPDNFHYSDTFAGECGSVLIQH-D..KIVGFHIGSLTF-TSVAPLDCGKQRVNLYINPDGTI---------------------------------------------------------------------------------------------rdelknldttknsglepkiacsgpyfnsvfvkwlsflyvankgksvqafthpnprdfktv.
Q9IHZ8_GAVAU/2823-3106                 ...........FLVGLVTHEVRTGNATTVEDLNKHPYNKYRKNIVRVYGERGDLNGFLSGKSLHFPRHIFDTCTDN.TLTRHIRVTKGEETHD......IELLSEEYDA.....TPFIKVESPFAEATELKFAKLQRTQHVYFV..TADDIRLGSMSTDGYHNISTKDGDCGSIIFDHLG..NVVGAHIVGISCIPPVNGALTWNPETELLCGPNADYDFDPTKVDPPKVWPVEPVTALSTVLNQLNYVTGDAFTTPKLPTNYQLVGCETLDQYVNACNLVTGQFPQIKEALDDFINGYVANLQRGAEAYN.............................................................
A0A1L3KIX8_9NIDO/2087-2230             ...pkaqdgli-----------------------------------------------------------------.----------------......----------.....-----------------PAKFNGTTHCYMYcqSSKTWRTGYISPDGTHSVSTQPGDSGSPIFIYDGkpRWVGIHVRG--GVDYYNSALTYDGYAWKDSPKHSE--FNSMVEKSDYVTPVEPTMAARILL--------------------------------------------------------------------htykgfgfrsaeeckqwyvigvtdinif.................................
Q9WPZ7_GAVAU/2823-3106                 ...........FLVGLVTHEVRTGNATTVEDLNKHPYNKYRKNIVRVYGERGDLNGFLSGKSLHFPRHIFDTCTDN.TLTRHIRVTKGEETHD......IELLSEEYDA.....TPFIKVESPFAEATELKFAKLQRTQHVYFV..TADDIRLGSMSTDGYHNISTKDGDCGSIIFDHLG..NVVGAHIVGISCIPPVNGALTWNPETELLCGPNADYDFDPTKVDPPKVWPVEPVTALSTVLNQLNYVTGDAFTTPKLPTNYQLVGCETLDQYVNACNLVTGQFPQIKEALDDFINGYVANLQRGAEAYN.............................................................
A0A650BL51_9NIDO/2116-2353             elevqrhlqqy-----------------------------------TYKNNTTLLGFTSGDKLYLQRHIFGRVEDDvALQKEIAEKIKNGTFQnelptpFKILSVEPSDnkmyyTFLIDAEFPEFEFGKSEYGNATLVGKDFKT..GKNVIQKTAMTPDNFHYSDTFAGECGSVLIQH-D..KIVGFHIGSLTF-TSVAPLDCGKQRVNLYINPDGTI---------------------------------------------------------------------------------------------rdelknldttknsglepkiacsgpyfnsvfvkwlsflyvankgksvqafthpnprdfktvg
B3U1H4_YHV/2834-3117                   ...........FLVGLVTHEVNTGNNTRVEDLNKHPYNKYRSNIVRVYGERGDLNGFLSGKFLYFPRHIFDSCTDN.TLTRHIRVTKGEGTHD......IELLSEEYDA.....TPFIKTDSPFAEATVLKFGKLQRTQYAYFV..TADDIRVGSMSADGYHNISTKDGDCGSLLFDHLH..NVVGAHIVGIASIPPVNGALTWNAEKEMLCGPNDDYDYDPEKVGPPKVWPVESITALSTILNQLNYVTGDAFTTPKLPTNYQLIGCETLDQYVNARNLVTGQFPQIKEALDDFINGYVANLQRGTEAYN.............................................................
#=GC seq_cons                          ..............................................sYtppssL.GFhSGc.Lah.RHIFspspDs.sLp+cIt.phtptTap......hclLS.E.ss.....T.hIcs-.P.hEhs..cauKhptTp+sYhs..oucsIRhGuMSsDGaHslSTpsGDCGSllFpH.s..plVGhHIsGlsslssVNuALTasscsphhssPsu-h.ass.h.tsshVhPVEshhAhphlL.................................................................................................................................
//