GenomeNet

Database: Pfam
Entry: Pesticin_RB
LinkDB: Pesticin_RB
Original site: Pesticin_RB 
#=GF ID   Pesticin_RB
#=GF AC   PF21613.1
#=GF DE   Pesticin, receptor binding domain
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF AU   Lazaro Pinto Beatriz;0000-0001-6837-2941
#=GF SE   ECOD:EF19592
#=GF GA   27.00 27.00;
#=GF TC   27.00 311.70;
#=GF NC   26.80 20.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP   Domain
#=GF RC   Paper describing PDB structure 4aqn
#=GF RN   [1]
#=GF RM   22593569
#=GF RT   Structural and mechanistic studies of pesticin, a bacterial
#=GF RT   homolog of phage lysozymes.
#=GF RA   Patzer SI, Albrecht R, Braun V, Zeth K;
#=GF RL   J Biol Chem. 2012;287:23381-23396.
#=GF RC   Paper describing PDB structure 4epf
#=GF RN   [2]
#=GF RM   22679291
#=GF RT   Structural engineering of a phage lysin that targets
#=GF RT   gram-negative pathogens.
#=GF RA   Lukacik P, Barnard TJ, Keller PW, Chaturvedi KS, Seddiki N,
#=GF RA   Fairman JW, Noinaj N, Kirby TL, Henderson JP, Steven AC,
#=GF RA   Hinnebusch BJ, Buchanan SK;
#=GF RL   Proc Natl Acad Sci U S A. 2012;109:9857-9862.
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This domain is found at the N-terminal end of Pesticin from
#=GF CC   Yersinia pestis (Pst). Pst is a toxin that kills related
#=GF CC   bacteria of the same niche as Y.pestis. It is organised into
#=GF CC   three domains: an N-terminal translocation domain, the
#=GF CC   intermediate receptor binding domain (RB, this entry), and a
#=GF CC   C-terminal activity domain (Pfam:PF16754). This domain shows a
#=GF CC   beta-sheet of seven anti-parallel beta-strands together with
#=GF CC   three helices. It is essential for the intimate contact with the
#=GF CC   outer membrane protein receptor [1,2].
#=GF SQ   1
#=GS Q57159_YERPE/17-152  AC Q57159.1
Q57159_YERPE/17-152             LFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDN
#=GC seq_cons                   LFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDN
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