#=GF ID Phage_T7_55
#=GF AC PF11247.12
#=GF DE Bacteriophage T7, gene 5.5
#=GF PI DUF2675;
#=GF AU Pollington J;0000-0002-8158-8998
#=GF AU Finn RD;0000-0001-8626-2148
#=GF SE PRODOM
#=GF GA 25.00 25.00;
#=GF TC 26.70 26.60;
#=GF NC 24.70 23.90;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP Family
#=GF RN [1]
#=GF RM 21764926
#=GF RT The 5.5 protein of phage T7 inhibits H-NS through interactions
#=GF RT with the central oligomerization domain.
#=GF RA Ali SS, Beckett E, Bae SJ, Navarre WW;
#=GF RL J Bacteriol. 2011;193:4881-4892.
#=GF DR INTERPRO; IPR022611;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC This family of phage proteins include Bacteriophage T7 gene 5.5
#=GF CC (also known as Protein suppressor of silencing) which plays a
#=GF CC role in the inhibition of gene silencing by the host
#=GF CC nucleoid-associated protein H-NS/hns. It disrupts higher-order
#=GF CC H-NS-DNA complexes [1].
#=GF SQ 55
#=GS A0A5B9NFI3_9CAUD/1-93 AC A0A5B9NFI3.1
#=GS A0A0E3JTA0_9CAUD/1-99 AC A0A0E3JTA0.1
#=GS A0A3G8F379_9CAUD/1-99 AC A0A3G8F379.1
#=GS A0A8E5FRX7_9CAUD/1-97 AC A0A8E5FRX7.1
#=GS A0A2H1UJJ6_9CAUD/1-102 AC A0A2H1UJJ6.1
#=GS A0A7G9IRD8_9CAUD/1-93 AC A0A7G9IRD8.1
#=GS W6PP61_9CAUD/1-100 AC W6PP61.1
#=GS A0A192Y7W1_9CAUD/1-98 AC A0A192Y7W1.1
#=GS I6Q9A6_9CAUD/1-94 AC I6Q9A6.1
#=GS Q778K6_BPT3/1-98 AC Q778K6.1
#=GS A0A385IGM1_9CAUD/1-96 AC A0A385IGM1.1
#=GS A0A6M5CC53_9CAUD/1-99 AC A0A6M5CC53.1
#=GS SGS_BPT7/1-99 AC P0DJY3.1
#=GS E1XUA2_9CAUD/1-99 AC E1XUA2.1
#=GS A0A1V0E6A5_9CAUD/1-99 AC A0A1V0E6A5.1
#=GS B6Z9G3_9CAUD/1-94 AC B6Z9G3.1
#=GS A0A385IF52_9CAUD/1-96 AC A0A385IF52.1
#=GS A0A6B9RGU6_9CAUD/1-100 AC A0A6B9RGU6.1
#=GS A0A1I9SE89_9CAUD/1-98 AC A0A1I9SE89.1
#=GS A0A1J0MEI5_9CAUD/1-95 AC A0A1J0MEI5.1
#=GS A0A088F7Y9_9CAUD/1-99 AC A0A088F7Y9.1
#=GS A0A4Y5TWI6_9CAUD/1-94 AC A0A4Y5TWI6.1
#=GS A0A4P6PMU3_9CAUD/1-99 AC A0A4P6PMU3.1
#=GS A0A514U6B7_9CAUD/1-99 AC A0A514U6B7.1
#=GS B3VCJ8_9CAUD/1-94 AC B3VCJ8.1
#=GS V5557_BPT7/1-99 AC P03787.2
#=GS W6PPM5_9CAUD/1-100 AC W6PPM5.1
#=GS A0A2P1CKY1_9CAUD/1-99 AC A0A2P1CKY1.1
#=GS A0A7S6R9E5_9CAUD/1-99 AC A0A7S6R9E5.1
#=GS K4P012_9CAUD/1-99 AC K4P012.1
#=GS A0A0E3GMQ9_9CAUD/1-99 AC A0A0E3GMQ9.1
#=GS A0A2S1GSQ2_9CAUD/1-96 AC A0A2S1GSQ2.1
#=GS A0A219YHB4_9CAUD/1-93 AC A0A219YHB4.1
#=GS A0A0D3QHF4_9CAUD/1-97 AC A0A0D3QHF4.1
#=GS D1L2V6_9CAUD/1-94 AC D1L2V6.1
#=GS A0A7G7YB66_9CAUD/1-105 AC A0A7G7YB66.1
#=GS A0ZXI4_9CAUD/1-94 AC A0ZXI4.1
#=GS B3VD02_9CAUD/1-93 AC B3VD02.1
#=GS A0A2S1GTD0_9CAUD/1-104 AC A0A2S1GTD0.1
#=GS A0A2Z5H4D0_9CAUD/10-107 AC A0A2Z5H4D0.1
#=GS I6Q9S0_9CAUD/1-99 AC I6Q9S0.1
#=GS A0A2D0PEA3_9CAUD/1-102 AC A0A2D0PEA3.1
#=GS A0A385IFF2_9CAUD/1-96 AC A0A385IFF2.1
#=GS Q9T119_9CAUD/1-100 AC Q9T119.1
#=GS A0A4D6DTD3_9CAUD/1-100 AC A0A4D6DTD3.1
#=GS A0A898KAI9_9CAUD/1-99 AC A0A898KAI9.1
#=GS A0A249Y2W6_9CAUD/1-99 AC A0A249Y2W6.1
#=GS A0A7D5KUN9_9CAUD/1-98 AC A0A7D5KUN9.1
#=GS A0A7S6U1V2_9CAUD/1-98 AC A0A7S6U1V2.1
#=GS A0A5P8NK75_9CAUD/8-105 AC A0A5P8NK75.1
#=GS A0A5J6T9G5_9CAUD/1-99 AC A0A5J6T9G5.1
#=GS A0A0P0LM25_9CAUD/1-97 AC A0A0P0LM25.1
#=GS L0HSJ8_9CAUD/1-98 AC L0HSJ8.1
#=GS Q9T120_9CAUD/1-100 AC Q9T120.1
#=GS A0A7G9UTQ4_9CAUD/1-100 AC A0A7G9UTQ4.1
A0A5B9NFI3_9CAUD/1-93 MGINKQFRVSFDVTATMSNEQ----EQEFLKELKELAKGP--....R.N......PRQDNILVQALTFGPEGAIVAILKDGLREAIKDL.GHE..V.qQ..S..EIN.......IRFAPAEVR---vk...
A0A0E3JTA0_9CAUD/1-99 MAMTKKFKVSFDVTAKMPSDVQAALEKDILHLCKQVGSGAIV....P.N......GKQKEMIVQFLTYGMEGVMAFIVRSSFREAIKDM.HKE..Y..S..D..KDC.......FKLSPATVREVF.....
A0A3G8F379_9CAUD/1-99 MAITKRFKVTFEVTSVIDSESEKNLSETVLRVARMVANGEKV....D.N......FKLG-FLEAALNGGPDEAAAYCIRHGLRSMVKEA.HDDlsF..N..E..KKH.......MRFSPAIVR---vt...
A0A8E5FRX7_9CAUD/1-97 MAITKRFKVSFEMTVKVDSETEDRIQEHILDLARSVCDGEKV....S.-......AQDKELLVQALTYGVDGAVTFAVKQVVRNEIREM.GIE..H..H..-..GEG.......IKFSPATIREV-k....
A0A2H1UJJ6_9CAUD/1-102 MSITKRYKVTFEFTHVIDSECLTQLDKRVLEAAQVVTGKLTV....Q.DspfnsyGFAKGLVLAALNGGQEAAAAFLVKSGMREFLR--.-YE..L..T..S..EDG.......LKIAPAYVREV-r....
A0A7G9IRD8_9CAUD/1-93 MAMTKRMRVSFSLGVVFPTEHVENFKKTLCELSRKVLNGEK-....T.N......GFERKMVEVAVTEGPEAVVELVIKKATIEGLKED.PSS..Y..A..D..QPS.......FG----------nfrve
W6PP61_9CAUD/1-100 MAITKRLKVTFDATCVVDSDMLGQIDKLIVETARKLKAGEKV....-.N......PVHKEMVRRALTEGQEAAATFVLADGIREFIRSS.YNE..LrgS..E..KDV.......VKFSPATIRVV-k....
A0A192Y7W1_9CAUD/1-98 MAITKKFKVSFDVTLKLDSETEELMREKILDLAHRAGAGEEI....A.P......-VDREMLVQALTRGPDGAAAFAVRQGIRKAVKEM.FED..T..S..D..KSL.......FKLSPATVREVF.....
I6Q9A6_9CAUD/1-94 MAITKRFKVSFEVTAVITSEMEKQCTDALIQLAKKAAAGENL....S.-......PLDREFLVQALTHGVEGAISFSSKHGMREFIRKE.LPE..-..-..-..-AG.......LKISPATIREV-k....
Q778K6_BPT3/1-98 MAITKKFKVSFDVTLKLDSETEELMREKILDLAHRAGAGEEI....T.-......PMDRELLVQALTRGPDGAAAFAVRQGIRNAVKEM.FEE..T..S..D..KSL.......LKLSPATVREVF.....
A0A385IGM1_9CAUD/1-96 MALTIKQKVSFDVKFVVDSETEKTFEGNILEALRGFHAGTRE....L.D......GHERHVATVFLKEGLEAAIREILVGLYKGAVKEA.FLE..D..L..E..VSS.......--LSPVVVRNV-.....
A0A6M5CC53_9CAUD/1-99 MAMTKKFKVSFDVTAKMPSDVQAILEKDMLHLCKQVGSGAIV....P.D......GKQKEMIVQFLTHGMEGVMEFVVRTSFREAIKDM.HEE..Y..S..D..KDC.......FKLSPATVREVF.....
SGS_BPT7/1-99 MAMTKKFKVSFDVTAKMSSDVQAILEKDMLHLCKQVGSGAIV....P.N......GKQKEMIVQFLTHGMEGLMTFVVRTSFREAIKDM.HEE..Y..A..D..KDS.......FKQSPATVREVF.....
E1XUA2_9CAUD/1-99 MTMTKRFKVSFEVTAKLSSDVLEILEEDALLLCKQVDSGEVV....P.D......GKQRELLTQFLTHGMDGVMSYIVRTTFRRAIKEL.PEE..Y..N..D..RDS.......LRLSPATVREV-r....
A0A1V0E6A5_9CAUD/1-99 MAITKRFKVTFEVTSVIDSESEKNLGETVLRVARMVANGEKV....D.N......FKLG-FLEAALSGGPDAAAAYCIRHGLRSMVKEA.HDDlsF..N..E..KKR.......MRFSPAIVR---vt...
B6Z9G3_9CAUD/1-94 MAITKRFKVSFEVTAVINSEMEKGFTEELVHLAKKAAAGEKI....S.-......PRDRELLVQALTHGVEGAISFAAKQGMREFIRTE.L--..-..-..P..EDG.......LKVSPATIREV-k....
A0A385IF52_9CAUD/1-96 MALTIKQKVSFDVKFVVDSETEKTFESNILEAIRGFHAGTRE....L.E......GLERYVVTVFLKEGLEAAITAIIAGLYKGTIKEA.FLE..D..L..D..VSS.......--LSPVVVRNV-.....
A0A6B9RGU6_9CAUD/1-100 MAMTKKFKVSFDVTAVVTSEGEQNLRDCVMRVAKEVAAGEQV....D.D......FK-KELLVQALTHGPDGLATFLIKQGLRSFVKDN.YKD..L..S..EseRKL.......MRFSPATVREVF.....
A0A1I9SE89_9CAUD/1-98 MAMTKRAIVSFNLKAVLPTDQEEFIIKGLRELAKDVHSGEIN....P.D......GKQRHMLTLWLTEGMDAVIEFVLRDSFRSTIKEA.VQE..Y..S..D..AEF.......FSVSPATVR---fk...
A0A1J0MEI5_9CAUD/1-95 MGMNKQFRVAFDVTATLSNEQEEALNAALVELAKMDKR----....-.T......PRQDNLLVQALTHGPEGAMVAIMKDELRTALREL.CQE..I.sC..D..VVN.......IKFSPATVREKF.....
A0A088F7Y9_9CAUD/1-99 MAMTKKFKVSFDVTAKMVSDVQVILEKDMLHLCKQVGSGAIV....P.N......GKQKEMIVQFLTHGMEGLMTFVVRTAFREAIKDM.HEE..Y..A..D..KDS.......FKLSPATVREVF.....
A0A4Y5TWI6_9CAUD/1-94 MGMNKKFRVTFDVTATMSNEQEQEFLKDLLELADSVGT----....-.D......KRQAHIVTEAITNGHEAALAFVLQSGLREAIKEL.GKE..V.nC..E..SVT.......VRFSPAIVR---vt...
A0A4P6PMU3_9CAUD/1-99 MAITKRFKVTFEVTSVIDSESEKNLSETVLRVARMVANGEKV....D.N......FKLG-FLEAALNGGPDEAAAYCIRHGLRSMVKEA.HDDlsF..N..E..KKL.......MRFSPAIVR---vt...
A0A514U6B7_9CAUD/1-99 MAITKRFKVTFEVTSVIDSESEKSLSEIVLRVARMVANGEKV....D.N......FKLGFLEV-ALSGGPDAAAAYCIRHGLRSMVKEA.HDD..L..SlnE..KKL.......MRFSPAIVR---vt...
B3VCJ8_9CAUD/1-94 MAITKRFKVSFEVTAVITSEMEKQCTDALIQLAKKAAAGENL....S.-......PLDREFLVQALTHGVEGAISFSSKHGMREFIRKE.LPE..-..-..-..-AG.......LKISPATIREV-k....
V5557_BPT7/1-99 MAMTKKFKVSFDVTAKMSSDVQAILEKDMLHLCKQVGSGAIV....P.N......GKQKEMIVQFLTHGMEGLMTFVVRTSFREAIKDM.HEE..Y..A..D..KDS.......FKQSPATVREVF.....
W6PPM5_9CAUD/1-100 MAITKRLKVTFDATCVVDSDMLGQIDKLIVETARKLKAGEKV....-.N......PVHKEMVRRALTEGQEAAATFVLADGIREFIRSS.YNE..LrgS..E..KDV.......VKFSPATIRVV-k....
A0A2P1CKY1_9CAUD/1-99 MAMTKRYKVTFEITAKLTTKDVDEFTKGLIETSRKIVEGKPV....-.N......PELRACVMAALEGGVEAAVECAYRRGVRELIRDA.YNE..M..CseE..RAA.......TKFSPATVE---vl...
A0A7S6R9E5_9CAUD/1-99 MAITKRFKVTFEVTSVIDSESEKNLSETVLRVARMVANGEKV....D.N......FKLG-FLEAALSGGPDAAAAYCIRHGLRSMVKEA.HDDlsF..N..E..KKL.......MRFSPAIVR---vt...
K4P012_9CAUD/1-99 MAMTKRYKVTFEITAKLSTKEVEAFTKGLIETSRKIVEGKPV....-.N......PELRACVMAALEGGVEAAVECAYRRGVRELIRDA.YNE..M..C..SeeRAV.......TKFSPATVE---vl...
A0A0E3GMQ9_9CAUD/1-99 MAMTKKFKVSFDVTAKMASDVQAILEKDILHLCKQVGSGAIV....P.N......GKQKEMIVQFLTYGMEGLMAFLVRTSFREAIKDM.HEE..Y..A..D..KDS.......FKLSPATVREVF.....
A0A2S1GSQ2_9CAUD/1-96 MALTIKQKVSFDVKFVVDSETEKTFESNILEAIRGFHAGTRE....L.E......GLERYVVTVFLKEGLEAAITAIIAGLYKGTIKEA.FLE..D..L..D..VSS.......--LSPVVVRNV-.....
A0A219YHB4_9CAUD/1-93 MGINKQFRVTFDVTATMSNDQEQEFLKDLLELAHGV------....D.D......KRQAHIVTEAVTNGHEAALALVLQSGLREAIKDL.GKE..V.nC..E..SVT.......VRFSPASVR---vt...
A0A0D3QHF4_9CAUD/1-97 MAITKRFKVSFEMTVKVDSETEDMIKERILDLARSVRDGESV....S.-......AQDKELLVQALTHGADGVVAFAVKQGIRNEIREM.GIE..H..H..-..GEG.......IKFAPATIREV-k....
D1L2V6_9CAUD/1-94 MGINKQFRVTFDVTATMSNEQ----EQEFLKELKELAKGPRD....P.-......-RQDNILVKALTFGPEGAIVAILKDGLRKAIKDLgHEV..Q..K..S..EIN.......IRFAPAEVR---vkv..
A0A7G7YB66_9CAUD/1-105 MAMTKRMRVSFSLCTVLSTKDIEGLNGALCKLSRKVLNGEK-....T.T......GFERKMVEVGVTEGMEAVVELVLKKGIVDGLKED.LTS..Y..S..N..KPSfgdfrveFKLSPATVREVF.....
A0ZXI4_9CAUD/1-94 MAITKRFKVSFEVTAVITSEMEKQCTDALIQLAKKAAAGENL....S.-......PLDREFLVQALTHGVEGAISFSSKHGMREFIRKE.LPE..-..-..-..-AG.......LKISPATIREV-k....
B3VD02_9CAUD/1-93 MGINKQFRVTFDVTATMSDDQEREFLEDLLSLAYG------V....D.D......KRQAHIVTEAITKGHEAALAFVMQSGLREAIKDI.GKE..L..S.cS..AVT.......VRFSPATVR---vt...
A0A2S1GTD0_9CAUD/1-104 MAITQKHKVEFMVTAVLPSDVEQELAQDLVKLAKAVMNGETHfkghPiD......GRQKHMLTVFVTEGMEGVAAFLIRQAMREAIKEM.REE..Y..A..D..GDC.......FKFSPASVRKV-s....
A0A2Z5H4D0_9CAUD/10-107 MAITKKFKVSFDVTVKLGSVEEEQLKETIQRIAKQVAAREDV....D.H......-TNKELLVQALTGGPDGAVAFIIRKSIREGVKEM.FEE..I..G..D..KRL.......FKASPATVRVV-k....
I6Q9S0_9CAUD/1-99 MAMTKKFKVSFDVTAKMSSDVQAILEKDMLHLCKQVGSGAIV....P.N......GKQKEMIIQFLTHGMEGLMTFVVRTSFREAIKDM.HEE..Y..A..D..KDS.......FKLSPATVREVF.....
A0A2D0PEA3_9CAUD/1-102 MSITKRYKVTFEFTHVIDSEGLTQLDKRVLEAAQVVTGKLTV....Q.DspfnsyGFAKGLVLAALNGGQEAAAAFLVKSGMREVLRD-.--E..L..T..S..EDG.......FKFAPAYVREV-r....
A0A385IFF2_9CAUD/1-96 MALTIKQKVSFDVKFVVDSETEKTFESNILEAIRGFHAGTRE....L.E......GLERYVVTVFLKEGLEAAITAIIAGLYKGTIKEA.FLE..D..L..D..VSS.......--LSPVVVRNV-.....
Q9T119_9CAUD/1-100 MAMTKHFKVTFDVTAVIDSESEKNLNELLVDLAKKAGAGEKL....N.P......FK-QELLIQGLTHGPEGAAAFCIKQGLREFIRDG.HSE..L..SstE..QKL.......MRFSPATVREVF.....
A0A4D6DTD3_9CAUD/1-100 MAITKRFKVSFEVTAVIDSESENNLNDVLVDIAKKAATGEEL....-.N......PFKRELLVQGLTYGPEGAATFCIKQALRNFIREG.HSE..M..SstE..RKL.......MRFSPATIREV-k....
A0A898KAI9_9CAUD/1-99 MAMTKKFKVSFDVTAKMASDVQAILEKDILHLCKQVGSGAIV....P.N......GKQKEMIVQFLTYGMEGLMAFLVRTSFREAIKDM.HEE..Y..A..D..KDS.......FKLSPATVREVF.....
A0A249Y2W6_9CAUD/1-99 MAMTKKFKVSFDVTAKMASDVQEILEKDILHLCKQAGSGAIV....P.D......GKQKEMIVQFLTYGMEGLMAFLVRTSFREAIKDM.HEE..Y..A..D..KDS.......FKLSPATVREVF.....
A0A7D5KUN9_9CAUD/1-98 MAMTKRAIVSFNLKAVLPTDQEEIIIKGLRELAKGVHSGEIN....P.D......GKQRHMLTMWLTVGMDAVIEFILRDNLRSMIKES.IQE..Y..S..D..SEF.......FSVSPATVR---fk...
A0A7S6U1V2_9CAUD/1-98 MAITKKFKVSFDVTLKLDSDTEELMRERILDLAHRAGAGEEI....A.P......-MDRELLVQALTSGPDGAAAFAVRQGLRNAIKEM.FEE..M..G..D..SSL.......FKASPATVREVF.....
A0A5P8NK75_9CAUD/8-105 MAMTLKGKVSFGVTYVIDSASEKALDDTVLSIARRVAKGETV....S.P......FK-RELLRVALEGGPEAAAKFCIKTGLRQGIKEM.HDD..L..N..S..EEQk.....lCRFSPAQ-----vvl..
A0A5J6T9G5_9CAUD/1-99 MAMTKKFKVSFDVTAKMSSDVQAILEKDMLHLCKQVGSGAIV....P.N......GKQKEMIVQFLTHGMEGLMTFVVRTAFREAIKDM.HEE..Y..A..D..KDS.......FKLSPATVREVF.....
A0A0P0LM25_9CAUD/1-97 MAITKKFKVSFDMTVKVDSETEQLLKERIRELAKQVGSGEKV....S.A......-ADRELLVRALTYGPDGVVAFCVQQGVRSAIKEL.GED..H..Q..-..GEG.......FVFSPATVRVV-s....
L0HSJ8_9CAUD/1-98 MTITKKFKVSFDVTLKLDSETEELMREKILDLAHRAGAGEEI....A.P......-MDRELLVQALTRGPDGAAAFAVRQGIRTNVKEM.FEE..S..G..D..KSM.......FKVSPATVREVF.....
Q9T120_9CAUD/1-100 MAMTKHFKVTFDVTAVIDSESEKNLNELLVDLAKKAGAGEKL....N.P......FK-QELLIQGLTHGPEGAAAFCIKQGLREFIRDG.HSE..L..SstE..QKL.......MRFSPATVREVF.....
A0A7G9UTQ4_9CAUD/1-100 MTMTKHFKVTFDVTAVIDSESEKNLNELLVDLAKKAGSGEKL....N.P......FK-QELLIQGLTHGPEGAAAFCIKQGLREFIRDG.HSE..L..SstE..QKL.......MRFSPATVREVF.....
#=GC seq_cons MAhTK+FKVSF-VTuslsS-sEctlpcslLcLA+pluuGcpl....s.s......scp+chllpuLTpG.EuAhsFsl+puhRcsIK-h.apE..h..s..-..ccs.......h+hSPATVRpV......
//
