GenomeNet

Database: Pfam
Entry: Plasmo_rep
LinkDB: Plasmo_rep
Original site: Plasmo_rep 
#=GF ID   Plasmo_rep
#=GF AC   PF12135.12
#=GF DE   Plasmodium repeat family
#=GF PI   Sialidase_penC;
#=GF AU   Mistry J;0000-0003-2479-5322
#=GF AU   Gavin OL;
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Gavin OL
#=GF GA   23.00 23.00;
#=GF TC   23.20 29.90;
#=GF NC   21.30 22.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 --cpu 4 -E 1000 HMM pfamseq
#=GF TP   Repeat
#=GF DR   INTERPRO; IPR021984;
#=GF DR   SO; 0001068; polypeptide_repeat;
#=GF CC   This repeat is found in plasmodia. This entry contains two
#=GF CC   copies of the repeat.  The function of these proteins is
#=GF CC   unknown.
#=GF SQ   7
#=GS A0A509ASE5_PLABA/2706-2729  AC A0A509ASE5.1
#=GS A0A509ASE5_PLABA/2730-2754  AC A0A509ASE5.1
#=GS Q7RTC2_PLAYO/979-1002       AC Q7RTC2.1
#=GS Q7RTC2_PLAYO/1029-1052      AC Q7RTC2.1
#=GS Q7RTC2_PLAYO/954-978        AC Q7RTC2.1
#=GS A0A509ASE5_PLABA/2655-2679  AC A0A509ASE5.1
#=GS Q7RTC2_PLAYO/1053-1077      AC Q7RTC2.1
A0A509ASE5_PLABA/2706-2729             -SNSEVYSSEHEIEQNDETYSLTGI
A0A509ASE5_PLABA/2730-2754             FSDNEVYNPKREVEQNDEIYSLNGI
Q7RTC2_PLAYO/979-1002                  YQDREIYNYD-QIYQNREIYNYDQI
Q7RTC2_PLAYO/1029-1052                 -SNSEVYSSEHEIEQNDEVYSLSGI
Q7RTC2_PLAYO/954-978                   FPNPQLYAFDNEIYQNREIYNYDQM
A0A509ASE5_PLABA/2655-2679             FPNPQLYASNNEIDQNREIYNYNQI
Q7RTC2_PLAYO/1053-1077                 FSDNEIRSSEHEIEQSDEVYSLNGI
#=GC seq_cons                          asssElYus-pEI-QNcElYshstI
//
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