#=GF ID   Pneumo_ncap
#=GF AC   PF03246.17
#=GF DE   Pneumovirus nucleocapsid protein
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_3020 (release 6.5)
#=GF GA   24.40 24.40;
#=GF TC   24.60 553.60;
#=GF NC   24.30 24.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0156
#=GF DR   INTERPRO; IPR004930;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF SQ   8
#=GS NCAP_BRSVA/1-390    AC P22677.1
#=GS NCAP_HRSVB/1-390    AC O42053.1
#=GS Q5MKP0_9MONO/1-391  AC Q5MKP0.1
#=GS NCAP_HMPVC/1-392    AC Q6WBA1.1
#=GS C0Z3X5_9MONO/1-388  AC C0Z3X5.1
#=GS NCAP_AMPV1/1-392    AC Q2Y2M6.1
#=GS NCAP_MPV15/1-391    AC P26589.1
#=GS NCAP_HRSVA/1-390    AC P03418.1
NCAP_BRSVA/1-390               MALSKVKLNDTFNKDQLLSTSKYTIQRSTGDNIDIPNYDVQKHLNKLCGMLLITEDANHKFTGLIGILYAMSRLGREDTLKILKDAGYQVRANGVDVITHR--QDVNGKEMKFEVLTLVSLTSEVQGNIEIESRKSYKKMLKE-MGEVAPEYRHDSPDCGMIVLCVAALVITKLAAGDRSGLTAVIRRANNVLRNEMKRYKGL-IPKDIANSFYEVIEKYPHYIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYGAGQVMLRWGVLAKSVKNIMLGHASVQAEMEQVVEVYEYAQKLGGEAGFYHILNNPKASLLSLTQFPNFSSVVLGNAAGLGIMGEYRGTPRNQDLYDAAKAYAEQLKENGVINYSVLDLTTEELEAIKNQLNPKDNDV--e..
NCAP_HRSVB/1-390               MALSKVKLNDTLNKDQLLSSSKYTIQRSTGDNIDTPNYDVQKHLNKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILKDAGYHVKANGVDITTYR--QDINGKEMKFEVLTLSSLTSEIQVNIEIESRKSYKKMLKE-MGEVAPEYRHDSPDCGMIILCIAALVITKLAAGDRSGLTAVIRRANNVLKNEIKRYKGL-IPKDIANSFYEVFEKHPHLIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYGSGQVMLRWGVLAKSVKNIMLGHASVQAEMEQVVEVYEYAQKLGGEAGFYHILNNPKASLLSLTQFPNFSSVVLGNAAGLGIMGEYRGTPRNQDLYDAAKAYAEQLKENGVINYSVLDLTAEELEAIKNQLNPKEDDV--e..
Q5MKP0_9MONO/1-391             MSLDRLKLNDVSNKDSLLSNCKYSVTRSTGDVTSVSGHAMQKALARTLGMFLLTAFNRCEEVAEIGLQYAMSLLGRDDSIKILREAGYNVKC--VDTQLKDFTIKLQGKEYKIQVLDIVGIDAANLADLEIQARGVVAKELKT-GARLPDNQRHDAPDCGVIVLCIAALVVSKLAAGDRGGLDAVERRALNVLKAEKARYPNMEVKQ-IAESFYDLFERKPYYIDVFITFGLAQSSVKGGSKVEGLFSGLFMNAYGAGQVMLRWGLLAKSVKNIMLGHASVQAEMEQVVEVYEYAQKQGGEAGFYHIRNNPKASLLSLTNCPNFTSVVLGNAAGLGIIGSYKGAPRNRELFDAAKDYAERLKDNNVINYSALNLTAEERELISQQLNIVDDTP--dd.
NCAP_HMPVC/1-392               MSLQGIHLSDLSYKHAILKESQYTIKRDVGTTTAVTPSSLQQEITLLCGEILYAKHADYKYAAEIGIQYISTALGSERVQQILRNSGSEVQV--VLTRTYSLGKVKNNKGEDLQMLDIHGVEKSWVEEIDKEARKTMATLLKESSGNIPQNQRPSAPDTPIILLCVGALIFTKLASTIEVGLETTVRRANRVLSDALKRYPRMDIPK-IARSFYDLFEQKVYYRSLFIEYGKALGSSSTGSKAESLFVNIFMQAYGAGQTMLRWGVIARSSNNIMLGHVSVQAELKQVTEVYDLVREMGPESGLLHLRQSPKAGLLSLANCPNFASVVLGNASGLGIIGMYRGRVPNTELFSAAESYAKSLKESNKINFSSLGLTDEEKEAAEHFLNVSDDSQND...
C0Z3X5_9MONO/1-388             MSLDSIRLSDLEYKHAILDDSQYTIRRDVGATTAVTPSELQPQVSTLCGMVLFTKHSDYEPAAEVGMQYISTALGADRTQQILRNSGSEVQG--VMTRTVMV--PTEGLIKRREVLDIHGVGVGWADEVEKAARETMGNMVRD-KAQIPKNQKPSAVDAPIILLCIGALIFTKLASTVEVGLETAIRRASRVLSDAISRFPRMDIPR-IAKSFFELFEKKVYYRNLFIEYGKALGSTSTGSRMESLFVNIFMQAYGAGQTMLRWGVVARSSNNIMLGHVSVQAELKQVSEVYDLVRKMGPESGLLHLRQSPKAGLLSLTSCPNFASVVLGNAAGLGIIGMYKGRAPNLELFAAAESYARTLKESNKINLAALGLTEDEREAATSYLGGEDE----rsp
NCAP_AMPV1/1-392               MSLQGIQLSDLSYKHAILKESQYTIKRDVGTTPAVTPSSLQREVSLLCGEILYAKHTDYSHAAEVGMQYVSTTLGAERTQQILKNSGSEVQA--VLTKTYSLGKGKNSKGEELQMLDIHGVEKSWVEEVDKEARKTMASATKDNSGPIPQNQRPSSPDAPIILLCIGALIFTKPASTIEVGLETAVRRANRVLNDALKRFPRIDIPK-IARSFYDLFEQKVYYRSLFIEYGKALGSSSTGSKAESLFVNIFMQAYGAGQTMLRWGAIARSSNNIMLGHVSVQAELKQVTEVYDLVREMGPESGLLHLRQSPKAGLLSLANCPNFASVVLGNASGLGILGMYRGRVPNTELFAAAESYARSLKESNKINFSSLGLTEEEKEAAENFLNINEEGQND...
NCAP_MPV15/1-391               MSLDRLKLNDVSNKDSLLSNCKYSVTRSTGDVTSVSGHAMQKALARTLGMFLLTAFNRCEEVAEIGLQYAMSLLGRDDSIKILREAGYNVKC--VDTQLKDFTIKLQGKEYKIQVLDIVGIDAANLADLEIQARGVVAKELKT-GARLPDNRRHDAPDCGVIVLCIAALVVSKLAAGDRGGLDAVERRALNVLKAEKARYPNMEVKQ-IAESFYDLFERKPYYIDVFITFGLAQSSVRGGSKVEGLFSGLFMNAYGAGQVMLRWGLLAKSVKNIMLGHASVQAEMEQVVEVYEYAQKQGGEAGFYHIRNNPKASLLSLTNCPNFTSVVLGNAAGLGIIGSYKGAPRNRELFDAAKDYAERLKDNNVINYSALNLTAEERELISQQLNIVDDTP--dd.
NCAP_HRSVA/1-390               MALSKVKLNDTLNKDQLLSSSKYTIQRSTGDSIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTHR--QDINGKEMKFEVLTLASLTTEIQINIEIESRKSYKKMLKE-MGEVAPEYRHDSPDCGMIILCIAALVITKLAAGDRSGLTAVIRRANNVLKNEMKRYKGL-LPKDIANSFYEVFEKHPHFIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYGAGQVMLRWGVLAKSVKNIMLGHASVQAEMEQVVEVYEYAQKLGGEAGFYHILNNPKASLLSLTQFPHFSSVVLGNAAGLGIMGEYRGTPRNQDLYDAAKAYAEQLKENGVINYSVLDLTAEELEAIKHQLNPKDNDV--e..
#=GC seq_cons                  MSLs+lKLNDlpNKDuLLSsSKYTIpRSTGDssuVosaslQKcls+LCGMlLlTcaucacasAEIGhQYAMStLGREDTlKILR-AGYcV+u..VDTpTach.pclNGKEhKhpVLDIsGlssuhhs-lEIEARKohuKhLK-.tGclPsNpRHDuPDCGlIlLCIAALVlTKLAAGDRuGL-AVlRRANNVL+sEhKRYPsh-IPK.IAcSFY-LFE+KPYYIDVFIcFGlAQSSo+GGS+VEGLFuGLFMNAYGAGQVMLRWGVLAKSVKNIMLGHASVQAEMEQVVEVYEYAQKhGGEAGFYHIRNNPKASLLSLTsCPNFoSVVLGNAAGLGIlGpYRGsPRNpELFDAAKuYAEpLKENNVINYSuLsLTsEE+EAIcpQLNspD-ss..-..
//