#=GF ID   Poty_PP
#=GF AC   PF08440.14
#=GF DE   Potyviridae polyprotein
#=GF AU   Wuster A;0000-0003-4162-5931
#=GF SE   Pfam-B_237 (release 18.0)
#=GF GA   23.40 23.40;
#=GF TC   23.70 52.90;
#=GF NC   22.80 22.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 --cpu 4 -E 1000 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR013648;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This domain is found in polyproteins of the viral Potyviridae
#=GF CC   taxon.
#=GF SQ   12
#=GS POLG_BVY3/1852-2133         AC A0AUJ5.1
#=GS K4PBT6_9POTY/1523-1796      AC K4PBT6.1
#=GS POLG_RGMVD/1502-1776        AC O11436.1
#=GS A0A1L3KNT4_9VIRU/1020-1269  AC A0A1L3KNT4.1
#=GS POLG_SBMVN/1549-1821        AC P21231.2
#=GS A0A1W6GVB0_9POTY/971-1234   AC A0A1W6GVB0.1
#=GS POLG_BSTV1/1529-1801        AC Q65730.1
#=GS POLG_PVYN/1542-1814         AC P18247.2
#=GS POLG_TRMVU/1598-1842        AC A4KZ49.3
#=GS POL1_BAYMY/796-1039         AC Q9YJW3.1
#=GS POLG_TUMVJ/1613-1894        AC P89509.2
#=GS POLG_SPMMV/1930-2196        AC P89201.1
POLG_BVY3/1852-2133                    .SALMCFAANVPP.IF.DN.VDPALFGQVTRPQVQTAQMFELPIYITTPMISDAGALQSDIYQVIKKFVLREGSIQLTQDATYLSNMSNW...KTIADYFP...DI.SDTHA...M-R..HEKVPFFVKDFGENSYIALAEAIRKARNKSLGARGKLYGDVDATALLLQTDPGSLDRSIMIVETELVAQRSK.L..EDLNHHVHESTGMFQRYVSHLNHCL.RGRY..QTDQIQKNIEVLSNMRSTLVGYRQ.VVDKV....EPEEIp.hFVQQNPNITMIid..fqSDRTKADGFVKHGINGIYNYTKIASD........................................................
K4PBT6_9POTY/1523-1796                 .AALKSFVFNVPP.CL.IN.VDTELIDQITRPQATTASMFELDLVYFSHFIRQDGKIPKAIYHEFRHLMLRDTKLEIIDKYSTSVASRGW...KTVGFYSV...SG.HTRLD...EHH..NTFIPFHSHIISDEALSRIAQAMKDSDPGRGRGFALPADQLYQAVYKISYEQDKIGSILNVIEGLRQREQEK.L..DSLRTSTSILTSQSLLNILNCRFLAnKEKL..EQQYL-TSLTTLNNVEQTLRSIPS.GSSDE....TILEY...LRENPMTAQCVlfegaiSEQIDEQ-------------------illkkkfvlg..............................................
POLG_RGMVD/1502-1776                   .AAFQCFMYDLPV.MT.GQ.VSVSLLSKCTREQARTMAAFELSPFTMSNLVAFDGTMHPAIHDLLKKFKLRDSTVVLRRTALPLRASASW...YTVREYET...II.GDLHI...ENK..DVRIPFVANDLSNSLLEGLWDAIQCNRSDVSTT-KLTTVSANKIAYTLKTDTSSIQRTISIIDDLLAEERKK.Q..EMFTHHLSTTSGGYTFGLNAIAMCI.KSRY..AKGYCIENIATLTNVRNQLTEFSG.MSEDQ....YTSEI...-IQNYPDLTLV......HHQSKQEIIRNLKLKAKYDQTLIASD........................................................
A0A1L3KNT4_9VIRU/1020-1269             .AALLSFVYNLDV.YInAH.FDHSWLAGITRAQARTMLSFRMNSFFMRDLVFADGSLRPEMLQALKGNVQRSANIRTSTMQCISHVYESW...PVLGAYAP...SA.DNMND...QLA..RSRVPFVTHDLFDLDIDAIAMAVKAYRTPVKSRWGKPVKEVANV--IMYANQNNIHDAIRVAQSMRAEAKKQiLekERVQNMHRESPLACLFSKSTI-RDL.EKKLgeQIQMARRNLDKLNKFISNLEIFAS.SQE--....-----...-----------......--------------------------idddidmtpddlge..........................................
POLG_SBMVN/1549-1821                   .AAFLSFAYGLPV.TT.QS.VSTNILSRCTVKQARVALNFELTPFFTTNFIKYDGSMHPEIHRLLKSYKLRESEMLLTKIAIPYQFVGQW...VTVKEYER...QG.IHLNC...P-E..KVKIPFYVHGIPDKLYEMLWDTVCKYKNDAGFG-SVKSVNATKISYTLSTDPTAIPRTLAILDHLLSEEMTK.K..SHFDT-IGSAVTGYSFSLAGIADGF.RKRY..LKDYTQHNIAVLQQAKAQLLEFDCnKVDIN....NLHNV...--EGIGILNAV......QLQSKHEVSKFLQLKGKWDGKKFM--nd......................................................
A0A1W6GVB0_9POTY/971-1234              .AALYAFLYDLDL.YA.DStLDTNYLGNITRQQAEVMLNFDIPMYVLRDLVDKDGSMQPIMVSLLKNHVVGDTQITTRDVRVSADKWASW...PNAHDLIMlclRG.SEDEE...MMKlaKEKIPFCAYQLLDVDLKSFTECCAKYEPYRAFQ-TITAKSMNKK-VLLRVDPENINICHSVASALLKQQNDV.L..SSLLN-MQTACRD-SKLLSCFRQTR.RFMS.dHQNRIEATKRNVSKIRDHLAKLER.YDTFV....RDKEI...-----------......--------------------------ngefshadfgsvfdhmslqmr...................................
POLG_BSTV1/1529-1801                   .AALLSFAMQVPP.VL.RN.VNLQIFQRITREQVVTAARFEHQLSYMVWMVNKDGSMPTKLYDLFSPLLLSQGNMRLSPYYSSLYDSDTF...MTVKNYVD...IG.YLKHD...RTT..NQRLPFHCHDVSTTFAMKVADRFEDSRAPSTYSIRVPAVNLRHTAVKLSTDPAQVGMILVVIGEALVHQKNI.L..EQLKS-TRTQLDNYNSCILVPNWNV.RGKLddAINRVERNVSILENQKNSVEKMSV.ARGYD....ELKEL...LEENHAVAAHV......MYQKGPQKFIDDV-------------llqkrdfs................................................
POLG_PVYN/1542-1814                    .AALACFAYNLPV.MT.GG.VSTSLIGNCTVRQVKTMQQFELSPFFIQNFVAHDGSMHPVIHDILKKYKLRDCMTPLCDQSIPYRASSTW...LSVSEYER...LG.VALEI...P-K..QVKIAFHIKEIPPKLHEMLWETVVKYKDVCLFP-SIRASSISKIAYTLRTDLFAIPRTLILVERLLEEERVK.Q..SQFRSLIDEGCSS-MFSIVNLTNTL.RARY..AKDYTAENIQKLEKVRSQLKEFSN.LDGSA....CEENL...-IKRYESLQFV......HHQAATSLAKDLKLKGIWNKSLVAKD........................................................
POLG_TRMVU/1598-1842                   a-ILMSFTLELAP.FI.SS.HLIDEVNFVTREQVRTAMKFSAPLLFMIHYVRRDGRMLNGYYQQLKGLLLQTSDVALCDTLVGDAETNSF...LTLRQYQL...RGiIEAQE...VLP..DLPIPFYSSEFALPFYLEIGQITKEAIRARSFTLRIKTPDVKKAVMRLSTSATQIDQTIGILRTRLQLTRER.L..SKFSELKATAH--------------.----..------------------------.-----....-----...-----------......--------------------------nlrltpifntcfdmgaaksestlrasltageellsalelarteksdkaleklildn
POL1_BAYMY/796-1039                    .AALLSFKHNVPFyMN.ET.FESSWLKGVTKAQADTMTIFKLPIFLTRDLINADGSVAKEFLDVLKKHQFTTSDIKQAPSITAKHIFPTWasyFSLHQALH...YG.DDKDEiphELR..YARVPFSVTTLSKFDWPALALACEKHRASMSNVF--AGIEEPARVVTLQTNPANIQASITHLMHMSKNYKTL.I..ENNQHVRQSMMTNVMYKWFSSTRIT.KDLD.rNLRRCTDNLAVVEATLSSLRQ---.-----....-----...-----------......--------------------------ilagntqvhat.............................................
POLG_TUMVJ/1613-1894                   .AALKCFTYGLPV.IT.NN.VSTSILGNVTVKQARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPHRGVNAW...LTASEYAR...LG.ANVED...R-R..DVRIPFMCRDIPEKLHLDMWDVIVKFKGDAGFG-RLSSASASKVAYTLQTDVNSIQRTVTIIDTLIAEERRK.Q..EYFKTVTSNCVSSSNFSLQSITNAI.KSRM..MKDHTCENISVLEGAKSQLLEFRN.LNADHsfatKTDGIsrhFMSEYGALEAV......HHQNTSDMSKFLKLKGKWNKTLITRD........................................................
POLG_SPMMV/1930-2196                   .SALLCFAHGIKP.VC.DR.VDVAAIGTLTRQQALVSGQFELNKLLVAHSATPSGQIPRVVYELFKPLLLRTDAVPICSSYNAI-AACNW...LPLSTYMR...R-.NEKNE...HVL..ATKIPWYCSDLSEDFNIKLAECVKSCMSTSNARFIVDNVNFITVAHKISVGEKTVGQAKLMVGELLENSKSW.R..DGLLHVQSSSVTRSLVGLCTSWYQR.RAKA..ALDRLDLQVNRLQLLYDQLGQVEI.TSDYD....KLVEF...FTENGECAAYL......ESQSKTDFLEKHVL------------elrq....................................................
#=GC seq_cons                          .AALhsFsaslPs.hh.ss.VssshluplTRpQAcThttFEls.ahhpphlptDGohtstlaplLKphhLRsuplhlsshhsshpssssW...holppY.h...hG.sphp-.....c..ps+IPFhsp-lscphh.tls-shpch+sssshs.tlsssshsphshpLpT-sssIspslsllpphLtpp+pp.h..-phpphhpsssss..hsl.sht.sh.+t+h..thshhpcNlshLpphcspLtphpt.hss......p..ph.....pt...hthl........p.t.p...........................................................................
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