#=GF ID   RHH_7
#=GF AC   PF16777.9
#=GF DE   Transcriptional regulator, RHH-like, CopG
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   pdb_2k1o
#=GF GA   27.00 27.00;
#=GF TC   28.10 32.90;
#=GF NC   26.70 26.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP   Domain
#=GF CL   CL0057
#=GF RN   [1]
#=GF RM   18623065
#=GF RT   Structure of HP0564 from Helicobacter pylori identifies it as a
#=GF RT   new transcriptional regulator.
#=GF RA   Borin BN, Krezel AM;
#=GF RL   Proteins. 2008;73:265-268.
#=GF DR   INTERPRO; IPR031895;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   RHH_7 is a ribbon-helix-helix protein family expressed by
#=GF CC   Helicobacter species. These proteins bind to specific DNA
#=GF CC   sequences with high affinity and usually act as repressors. Many
#=GF CC   are putatively named CopG [1].
#=GF SQ   6
#=GS E7G2C0_9HELI/12-81     AC E7G2C0.1
#=GS S5Z6D0_9CREN/1-44      AC S5Z6D0.1
#=GS H5VDY9_HELBI/13-87     AC H5VDY9.1
#=GS O25010_HELPY/1-73      AC O25010.1
#=GS A0A4U8UEM8_9HELI/6-75  AC A0A4U8UEM8.1
#=GS O25288_HELPY/1-41      AC O25288.1
E7G2C0_9HELI/12-81                ................itq----ENTFQSKEQP.ERKKPGRKKVpTEELKKNYTVQLYFSKEEYEKLGKLAYEEAESVSSYIKRQIVKMLR----..
S5Z6D0_9CREN/1-44                 ..................m--------------.----------.-------RQVKFYIDEEHYEELKKLAQEQGLTVPGYVKRLVLKHLGEIEG..
H5VDY9_HELBI/13-87                ................lkn---ASNTQENTFKAkDKAKPGRKPL.PAHLKQNHTITFYLSQEEYNTLKSLADKEADSVSFFVKRYVLKHLVKGEG..
O25010_HELPY/1-73                 ...................MEKTENTDETRLRG.TKNKLGRKPK.ADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSYIKRYILKALRKIE-..
A0A4U8UEM8_9HELI/6-75             sknkeikesevenfinkkv--------------.--ANKGRKPI.NEEKKKTKLVSLYFSESDYQIIKETADRKRLSVSQYIVSKI---------fe
O25288_HELPY/1-41                 ..................m--------------.----------.----------TFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTIIYKKG..
#=GC seq_cons                     ....................................tp.GRK.h.stt.Kps+tVohYhScE-YppL++LAsEEs-SVuuYlKRhILKtLh.hc...
//