LinkDB: Raf1_HTH
Original site: Raf1_HTH
Gene (2278) KEGG GENES (2278) Protein sequence (1031) UniProt (1022) SWISS-PROT (9) Protein domain (2) InterPro (1) NCBI-CDD (1) All databases (3311)
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#=GF ID Raf1_HTH #=GF AC PF18579.5 #=GF DE Rubisco accumulation factor 1 helix turn helix domain #=GF AU El-Gebali S;0000-0003-1378-5495 #=GF SE ECOD:EUF07884 #=GF GA 27.30 27.30; #=GF TC 27.30 35.40; #=GF NC 26.90 21.40; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq #=GF TP Domain #=GF CL CL0123 #=GF RN [1] #=GF RM 26237510 #=GF RT Structure and mechanism of the Rubisco-assembly chaperone Raf1. #=GF RA Hauser T, Bhat JY, Milicic G, Wendler P, Hartl FU, Bracher A, #=GF RA Hayer-Hartl M; #=GF RL Nat Struct Mol Biol. 2015;22:720-728. #=GF DR INTERPRO; IPR040781; #=GF DR SO; 0000417; polypeptide_domain; #=GF CC This is helix turn helix domain found in alpha helical region of #=GF CC Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis #=GF CC thaliana consists of an N-terminal alpha-domain, a flexible #=GF CC linker segment and a C-terminal beta-sheet domain that mediates #=GF CC dimerization. The alpha-domains mediate the majority of #=GF CC functionally important contacts with RbcL (Rubisco large #=GF CC subunits) by bracketing each RbcL dimer at the top and bottom. #=GF CC The alpha-domain alone is essentially inactive [1]. #=GF SQ 388 #=GS A0A7T5JG52_9CYAN/23-83 AC A0A7T5JG52.1 #=GS A0A445EAZ5_ARAHY/85-145 AC A0A445EAZ5.1 #=GS A0A397Z278_BRACM/78-138 AC A0A397Z278.1 #=GS A0A0V7ZR71_9CYAN/18-78 AC A0A0V7ZR71.1 #=GS A0A7J0GUQ4_9ERIC/72-132 AC A0A7J0GUQ4.1 #=GS A0A1Z4UN21_9CYAN/18-78 AC A0A1Z4UN21.1 #=GS A0A8B8MBU4_ABRPR/73-133 AC A0A8B8MBU4.1 #=GS A0A6P5SB98_PRUAV/83-143 AC A0A6P5SB98.1 #=GS A0A1Z4RRN2_9CHRO/25-85 AC A0A1Z4RRN2.1 #=GS A0A073CE96_PLAAG/21-81 AC A0A073CE96.1 #=GS A0A078GWV1_BRANA/84-144 AC A0A078GWV1.1 #=GS A0A0D2TZT3_GOSRA/216-276 AC A0A0D2TZT3.1 #=GS I1NIM2_SOYBN/71-131 AC I1NIM2.2 #=GS A0A2A2TM98_9CYAN/18-78 AC A0A2A2TM98.1 #=GS A0A1Z4NGE1_9CYAN/19-79 AC A0A1Z4NGE1.1 #=GS A0A803MZ30_CHEQI/89-149 AC A0A803MZ30.1 #=GS A0A1Q3BFS5_CEPFO/44-104 AC A0A1Q3BFS5.1 #=GS A0A150GZ28_GONPE/14-74 AC A0A150GZ28.1 #=GS A0A252CR55_9NOSO/18-78 AC A0A252CR55.1 #=GS A0A7J6UX72_THATH/1-49 AC A0A7J6UX72.1 #=GS A0A166GZ34_DAUCS/31-91 AC A0A166GZ34.1 #=GS A0A0M1JKQ6_9CYAN/18-78 AC A0A0M1JKQ6.1 #=GS A0A835VUT9_CHLIN/84-144 AC A0A835VUT9.1 #=GS A0A0D3DCB7_BRAOL/78-138 AC A0A0D3DCB7.1 #=GS A0A4P1RLN4_LUPAN/71-123 AC A0A4P1RLN4.1 #=GS A0A0D8ZSI2_9CYAN/16-76 AC A0A0D8ZSI2.1 #=GS L8N1R4_9CYAN/11-71 AC L8N1R4.1 #=GS A0A5J5BCV6_9ASTE/80-140 AC A0A5J5BCV6.1 #=GS A0A1L9QQC9_9CYAN/15-75 AC A0A1L9QQC9.1 #=GS RAF2_ARATH/83-143 AC Q9SR19.1 #=GS K9RJV2_9CYAN/19-79 AC K9RJV2.1 #=GS A0A2J8AD52_9CHLO/119-179 AC A0A2J8AD52.1 #=GS K9RRY9_SYNP3/12-72 AC K9RRY9.1 #=GS A0A1S4BJ58_TOBAC/84-144 AC A0A1S4BJ58.1 #=GS A0A445EA68_ARAHY/84-144 AC A0A445EA68.1 #=GS K9T911_9CYAN/16-76 AC K9T911.1 #=GS A0A1S3UXX4_VIGRR/82-142 AC A0A1S3UXX4.1 #=GS A0A1Y0RRJ5_9CYAN/17-76 AC A0A1Y0RRJ5.1 #=GS A0A6A2YIV3_HIBSY/76-136 AC A0A6A2YIV3.1 #=GS A0A7J7H6I5_CAMSI/83-143 AC A0A7J7H6I5.1 #=GS A0A2T1C9F7_9CYAN/16-76 AC A0A2T1C9F7.1 #=GS A0A5A7PU79_STRAF/81-141 AC A0A5A7PU79.1 #=GS A0A6J5XU83_PRUAR/85-145 AC A0A6J5XU83.1 #=GS A0A1U8KSU1_GOSHI/80-140 AC A0A1U8KSU1.1 #=GS M1WZ50_9NOST/19-79 AC M1WZ50.1 #=GS A0A6J0JQ35_RAPSA/81-141 AC A0A6J0JQ35.1 #=GS A0A3N6NNH7_9CYAN/20-80 AC A0A3N6NNH7.1 #=GS A0A392MRV9_9FABA/1-49 AC A0A392MRV9.1 #=GS A9TW19_PHYPA/103-163 AC A9TW19.1 #=GS F4XTT8_9CYAN/21-81 AC F4XTT8.1 #=GS A0A1Z3HLK8_9CYAN/15-75 AC A0A1Z3HLK8.1 #=GS A0A314LE86_NICAT/84-144 AC A0A314LE86.1 #=GS U9VVM5_9CYAN/12-72 AC U9VVM5.1 #=GS K9X6P7_9NOST/18-78 AC K9X6P7.1 #=GS A0A540M2D9_MALBA/84-144 AC A0A540M2D9.1 #=GS K7WHP0_9NOST/18-78 AC K7WHP0.1 #=GS A0A8J5WNG5_ZIZPA/94-154 AC A0A8J5WNG5.1 #=GS A0A2K1IZW7_PHYPA/102-162 AC A0A2K1IZW7.1 #=GS K9Z7E0_CYAAP/15-75 AC K9Z7E0.1 #=GS A0A1U8B287_NELNU/83-143 AC A0A1U8B287.1 #=GS A0A8J7G2G3_9CYAN/22-82 AC A0A8J7G2G3.1 #=GS A0A5N6Q8Q0_9ASTR/88-148 AC A0A5N6Q8Q0.1 #=GS A0A1U8I7D1_GOSHI/80-140 AC A0A1U8I7D1.1 #=GS A0A1S4AF99_TOBAC/81-141 AC A0A1S4AF99.1 #=GS I1LBR6_SOYBN/78-138 AC I1LBR6.1 #=GS A0A5N5KGJ5_9ROSI/85-145 AC A0A5N5KGJ5.1 #=GS A0A484KDD1_9ASTE/79-139 AC A0A484KDD1.1 #=GS A0A2I4E982_JUGRE/75-135 AC A0A2I4E982.2 #=GS A0A6J0NHR4_RAPSA/76-136 AC A0A6J0NHR4.1 #=GS A0A7J9AUW2_9ROSI/166-226 AC A0A7J9AUW2.1 #=GS A0A0D9XK58_9ORYZ/101-161 AC A0A0D9XK58.1 #=GS K9W5B5_9CYAN/21-81 AC K9W5B5.1 #=GS B4WLN0_SYNS7/26-86 AC B4WLN0.1 #=GS A0A834YV89_9MAGN/85-145 AC A0A834YV89.1 #=GS B1X0I3_CROS5/16-76 AC B1X0I3.1 #=GS A0A251SQ47_HELAN/77-137 AC A0A251SQ47.1 #=GS A0A2P6TTV6_CHLSO/115-175 AC A0A2P6TTV6.1 #=GS A0A098TKN9_9CYAN/11-71 AC A0A098TKN9.1 #=GS A0A2T1EJK4_9CYAN/18-78 AC A0A2T1EJK4.1 #=GS A0A1Q4RU88_9CYAN/18-78 AC A0A1Q4RU88.1 #=GS A0A4S4DWL1_CAMSI/81-141 AC A0A4S4DWL1.1 #=GS A0A8J7DJ17_9CYAN/18-78 AC A0A8J7DJ17.1 #=GS A0A0E0EYF0_9ORYZ/44-104 AC A0A0E0EYF0.1 #=GS A0A2T1M1R6_9CHRO/16-76 AC A0A2T1M1R6.1 #=GS K8GFS8_9CYAN/17-77 AC K8GFS8.1 #=GS A0A2P5Y9B3_GOSBA/80-140 AC A0A2P5Y9B3.1 #=GS A0A1Z4N8E7_9CYAN/18-78 AC A0A1Z4N8E7.1 #=GS A0A3B5ZTJ0_WHEAT/109-169 AC A0A3B5ZTJ0.1 #=GS A0A103YBY5_CYNCS/80-140 AC A0A103YBY5.1 #=GS A0A452YBJ3_AEGTS/95-155 AC A0A452YBJ3.1 #=GS A0A388JWD6_CHABU/220-280 AC A0A388JWD6.1 #=GS A0A5B8MN98_9CHLO/97-157 AC A0A5B8MN98.1 #=GS B7JYJ8_RIPO1/11-71 AC B7JYJ8.1 #=GS A0A2U1NWW3_ARTAN/80-140 AC A0A2U1NWW3.1 #=GS A0A1Z4RBV1_9CYAN/18-78 AC A0A1Z4RBV1.1 #=GS A0A2T1DFU5_9CYAN/28-88 AC A0A2T1DFU5.1 #=GS A0A8J7B0T9_9CYAN/13-73 AC A0A8J7B0T9.1 #=GS K9SE74_9CYAN/17-77 AC K9SE74.1 #=GS A0A2G2VFE2_CAPBA/82-142 AC A0A2G2VFE2.1 #=GS A0A1U7J984_9CYAN/14-74 AC A0A1U7J984.1 #=GS A0A7J9FF65_9ROSI/131-191 AC A0A7J9FF65.1 #=GS A0A6I9T2Q2_SESIN/82-142 AC A0A6I9T2Q2.1 #=GS A0A0E0M855_ORYPU/59-119 AC A0A0E0M855.1 #=GS A0A5A7VA63_CUCME/81-141 AC A0A5A7VA63.1 #=GS W1NHC9_AMBTC/74-134 AC W1NHC9.1 #=GS A0A0S3SQ12_PHAAN/83-143 AC A0A0S3SQ12.1 #=GS A0A833R0W3_9POAL/84-144 AC A0A833R0W3.1 #=GS G6FZS9_9CYAN/19-79 AC G6FZS9.1 #=GS A0A2G4F6G6_9CYAN/21-81 AC A0A2G4F6G6.1 #=GS A0A1U7IJF8_9CYAN/19-79 AC A0A1U7IJF8.1 #=GS A0A1Z4JWH0_9CYAN/18-78 AC A0A1Z4JWH0.1 #=GS A0A2I0BF65_9ASPA/98-157 AC A0A2I0BF65.1 #=GS A0A2G9GVE9_9LAMI/79-139 AC A0A2G9GVE9.1 #=GS A0A1S2XXP0_CICAR/92-152 AC A0A1S2XXP0.1 #=GS A0A2V0P4U2_9CHLO/132-192 AC A0A2V0P4U2.1 #=GS B9I5M2_POPTR/84-144 AC B9I5M2.1 #=GS A0A7N2R1A3_QUELO/85-145 AC A0A7N2R1A3.1 #=GS A0A0T7BRW6_9CYAN/15-75 AC A0A0T7BRW6.1 #=GS A0A699Z9L3_HAELA/59-114 AC A0A699Z9L3.1 #=GS A0A836BW73_9CHLO/131-191 AC A0A836BW73.1 #=GS A0A0D2KB96_9CHLO/123-183 AC A0A0D2KB96.1 #=GS A0A498K8T8_MALDO/82-142 AC A0A498K8T8.1 #=GS A0A139X8X9_9CYAN/17-76 AC A0A139X8X9.1 #=GS A0A2I0VPE6_9ASPA/73-133 AC A0A2I0VPE6.1 #=GS A0A2S6CT22_9CYAN/15-75 AC A0A2S6CT22.1 #=GS A0A7I8L0Q1_SPIIN/82-142 AC A0A7I8L0Q1.1 #=GS A0A2R6PKR7_ACTCC/72-132 AC A0A2R6PKR7.1 #=GS A0A8J7EY94_9CYAN/23-83 AC A0A8J7EY94.1 #=GS A0YWA4_LYNSP/21-81 AC A0YWA4.1 #=GS A0A5N6QSA4_9ROSI/75-135 AC A0A5N6QSA4.1 #=GS A0A2G5DPA2_AQUCA/80-140 AC A0A2G5DPA2.1 #=GS A0A096P9A4_OSTTA/149-209 AC A0A096P9A4.1 #=GS A0A835W1R7_9CHLO/86-146 AC A0A835W1R7.1 #=GS A0A8R7K1C3_TRIUA/109-169 AC A0A8R7K1C3.1 #=GS A0A2I4EXP4_JUGRE/75-135 AC A0A2I4EXP4.2 #=GS E1ZGR5_CHLVA/112-172 AC E1ZGR5.1 #=GS A0A0A0LY43_CUCSA/81-141 AC A0A0A0LY43.1 #=GS A0A654SFC5_9CYAN/19-79 AC A0A654SFC5.1 #=GS K9PPR3_9CYAN/18-78 AC K9PPR3.1 #=GS RAF1_ARATH/73-133 AC Q9LKR8.1 #=GS A0A7J8T2D7_GOSDV/80-140 AC A0A7J8T2D7.1 #=GS A0A5D2WGL3_GOSMU/80-140 AC A0A5D2WGL3.1 #=GS RAF1_MAIZE/91-151 AC B4FR29.1 #=GS A0A6I9R1C1_ELAGV/78-138 AC A0A6I9R1C1.1 #=GS A0A699YNT7_HAELA/114-174 AC A0A699YNT7.1 #=GS A0A4V4H5I9_MUSBA/84-144 AC A0A4V4H5I9.1 #=GS A0A0D3AFM8_BRAOL/84-144 AC A0A0D3AFM8.1 #=GS A0A2P6VDB8_9CHLO/121-181 AC A0A2P6VDB8.1 #=GS A0A5J9SZW6_9POAL/191-240 AC A0A5J9SZW6.1 #=GS A0A1X4GAG5_9CYAN/19-79 AC A0A1X4GAG5.1 #=GS RAF1_NOSS1/18-78 AC Q8YLP6.1 #=GS A0A444DDR3_ENSVE/84-144 AC A0A444DDR3.1 #=GS A0A7J8VZG8_9ROSI/150-210 AC A0A7J8VZG8.1 #=GS A0A6J0JWY3_RAPSA/81-141 AC A0A6J0JWY3.1 #=GS A0A2R5FQR4_NOSCO/19-79 AC A0A2R5FQR4.1 #=GS A0A061F0U6_THECC/138-198 AC A0A061F0U6.1 #=GS A0A6P5YRA1_DURZI/80-140 AC A0A6P5YRA1.1 #=GS A0A2I0HKB4_PUNGR/127-187 AC A0A2I0HKB4.1 #=GS A0A261KKS2_9CYAN/20-80 AC A0A261KKS2.1 #=GS A0A7J6G379_CANSA/81-141 AC A0A7J6G379.1 #=GS A0A835CB56_9POAL/92-152 AC A0A835CB56.1 #=GS A0A7J7P760_9MAGN/80-140 AC A0A7J7P760.1 #=GS A0A1Z4IMG6_9CYAN/16-76 AC A0A1Z4IMG6.1 #=GS S8DRZ4_9LAMI/70-130 AC S8DRZ4.1 #=GS A0A176W0J1_MARPO/163-223 AC A0A176W0J1.1 #=GS D7DWK7_NOSA0/18-78 AC D7DWK7.1 #=GS A0A445F8T9_GLYSO/43-103 AC A0A445F8T9.1 #=GS A0A4U5MNZ8_POPAL/85-145 AC A0A4U5MNZ8.1 #=GS A0A2J6L5C1_LACSA/77-137 AC A0A2J6L5C1.1 #=GS A0A7N2M8E0_QUELO/85-145 AC A0A7N2M8E0.1 #=GS A0A6P3ZB03_ZIZJJ/93-153 AC A0A6P3ZB03.1 #=GS B0JQM2_MICAN/16-76 AC B0JQM2.1 #=GS A0A3S3QYF2_9MAGN/72-133 AC A0A3S3QYF2.1 #=GS A0A7J7DKV3_TRIWF/62-122 AC A0A7J7DKV3.1 #=GS D8RN09_SELML/1-56 AC D8RN09.1 #=GS A0A5C7IAC3_9ROSI/72-132 AC A0A5C7IAC3.1 #=GS A0A398AU98_BRACM/81-141 AC A0A398AU98.1 #=GS A0A835B4P4_9POAL/93-153 AC A0A835B4P4.1 #=GS A0A0H3K0Z0_SYNP6/18-78 AC A0A0H3K0Z0.1 #=GS A0A834T998_9FABA/1-49 AC A0A834T998.1 #=GS A0A835I5T6_9MAGN/84-144 AC A0A835I5T6.1 #=GS A0A2T1F7A6_9CYAN/21-81 AC A0A2T1F7A6.1 #=GS A0A200PW58_9MAGN/34-94 AC A0A200PW58.1 #=GS A4SAD1_OSTLU/64-124 AC A4SAD1.1 #=GS A0A7J8N9M4_9ROSI/166-226 AC A0A7J8N9M4.1 #=GS A0A218QS11_9CYAN/17-77 AC A0A218QS11.1 #=GS A0A6A5NAR7_LUPAL/70-130 AC A0A6A5NAR7.1 #=GS A0A6A4P1P0_LUPAL/68-128 AC A0A6A4P1P0.1 #=GS B7K7W5_GLOC7/16-76 AC B7K7W5.1 #=GS A0A2D0HB54_9NOSO/19-79 AC A0A2D0HB54.1 #=GS D8RLJ2_SELML/1-61 AC D8RLJ2.1 #=GS A0A2P5C364_PARAD/84-144 AC A0A2P5C364.1 #=GS D8G818_9CYAN/21-81 AC D8G818.1 #=GS A0A1R3HNU1_COCAP/98-158 AC A0A1R3HNU1.1 #=GS A0A811QSQ3_9POAL/2-45 AC A0A811QSQ3.1 #=GS A0A176WR82_MARPO/43-103 AC A0A176WR82.1 #=GS A0A835U890_VANPL/77-136 AC A0A835U890.1 #=GS A0A1J0ADD3_9CYAN/8-68 AC A0A1J0ADD3.1 #=GS A0A7J9CU89_GOSGO/166-226 AC A0A7J9CU89.1 #=GS A0A067JUQ5_JATCU/84-144 AC A0A067JUQ5.1 #=GS C1FI81_MICCC/145-205 AC C1FI81.1 #=GS A0A0K9PXV6_ZOSMR/83-143 AC A0A0K9PXV6.1 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A0A1J7G3X7_LUPAN/70-130 ......DTPSRLQILSDRLGLWHQYTPLIPFLLNQ.GFSPPSIEEQTGISAIQQNRLVVAAQVRDSL-i.... A0A3Q7JHP4_SOLLC/84-144 ......DTNSKLEVLANRLGLWYEYAPLIPSLTSE.GFTPSTLEEITGITGVEQNRLVVAAQVRETLV..... A0A0D6AAM1_9CHRO/12-72 .....e-KENIMTSLLHKEGCWVDWGKACQRLQQG.GINSQEIFEGTGLQTSQQNLVIVGAQVYDSLV..... W9RQR4_9ROSA/65-125 ......DVKSRLEVLADRLGLWFEYAPLIPSLIQE.GFTPPSLEEATGISGIEQNHLVVAAQVRDSL-i.... K9TXK8_CHRTP/10-70 ......DIEATLTSLRQKQGSWVEWGQAIAQLQKA.GQTPQQIFEATGFEPVQQNQVIVGAQVYTSL-e.... K8EPM5_9CHLO/208-268 ......DTNQMIMMLRQRAGHWFQLAKYIPALQKA.GYIPDQIFDETGIENKEQVLWQTWLSTYASLK..... A0ZI62_NODSP/19-79 ....vv--KELLRKLRQKQGNWVEWGVAIASLQKS.GYNPQQIFEETGFEPIQQNQVIVGSQVYNSLA..... A0A175YI77_DAUCS/71-131 .....d-APARLDILSNRLGLWFDYAPLIPSLTQE.GFSAPTIEEITGLTGVEQNQLIVGAQVRDSLV..... A0A367QUQ2_9NOSO/18-78 .....v-AQELLRKLRQKQGNWVEWGVAIASLQKA.GYNPQEIFEATGFEPIQQNQVIVGAQVYNSL-e.... K9VQM5_9CYAN/21-81 ......DAEKLIRSLRRKEGTWVEWGQACTALLKA.GYNSQRIFEETGFEPIQQNQVSVAAQVYTSMV..... 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A2Z7X6_ORYSI/2-50 ....is--------------TWHEYAPLISALSRE.GFTPSSIEEATGISGVEQNRVVVATQVRDSLV..... A0A087G0N4_ARAAL/69-129 ......DAAGKIEVLADRLGIWFEYAPLISSLYTE.GFTPPTIEELTGISGVEQNRLIVGAQVRDSLV..... A0A2K3DRH6_CHLRE/86-146 ......DPQEMLNKLRARAGHWHELAKLMAPLNSS.GYSSSAIDELTGITPLEQSKWVVAATVYESV-k.... A0A251W888_9CYAN/23-83 ......DAEALLTAMRRKQGTWVEWAEACQTLQKA.GQTDQAIFEATGFEPIQQNQIIVAMQVYKSIV..... A0A0E0BB37_9ORYZ/52-112 ....dl--GQRLAVLRDRLGLWHEYAPLISALSRE.GFTPSSIEEATGISGVEQNRVVVATQVRDSLV..... A0A3S0ZL82_CHLFR/17-77 .....v-AQELLRKLRQKQGNWVEWGQGCAYLQKA.GYSPQAIFEATGFEPSQQNQVIVGSQVYNSL-e.... V4KM35_EUTSA/78-138 ......DAAGKIEVLADRLGLWFEYAPLISSLYTE.GFTPPTIEELTGISGVEQNCLIVGSQVRDSLV..... A0A452YBH0_AEGTS/109-169 .....d-LTERLAVLRDRMGRWYEYAPLISSLSRE.GFTPASIEEATGMSGVEQNRLVVASQVRDSL-i.... K9YDY9_HALP7/14-74 .....q-AQELFRQLRQKEGNWVEWGKSCQQLQKA.GYNTQTIFEGTGFEPIHQNQVIVAAQVYDSL-l.... A0A5N5HT41_9ROSA/84-144 ......DANGRLEILANRLGLWFEYAPLIPSLTQE.GFTPPTIEEITGISNVEQNRLVVAAKVRDSL-i.... 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