#=GF ID RepA_C
#=GF AC PF04796.16
#=GF DE Plasmid encoded RepA protein
#=GF AU Waterfield DI;0000-0003-2885-5126
#=GF AU Finn RD;0000-0001-8626-2148
#=GF SE Pfam-B_6223 (release 7.5)
#=GF GA 26.00 26.00;
#=GF TC 27.40 26.20;
#=GF NC 25.90 25.80;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP Family
#=GF CL CL0123
#=GF RN [1]
#=GF RM 11914352
#=GF RT Origin binding activity of the Mycobacterial plasmid pAL5000
#=GF RT replication protein RepB is stimulated through interactions with
#=GF RT host factors and coupled expression of repA.
#=GF RA Basu A, Chawla-Sarkar M, Chakrabarti S, Das Gupta SK;
#=GF RL J Bacteriol 2002;184:2204-2214.
#=GF DR INTERPRO; IPR006881;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC Family of plasmid encoded proteins involved in plasmid
#=GF CC replication. The role of RepA in the replication process is not
#=GF CC clearly understood [1].
#=GF SQ 414
#=GS A0A2S4HCB5_9GAMM/201-364 AC A0A2S4HCB5.1
#=GS A0A7W8LMS7_9SPIR/168-255 AC A0A7W8LMS7.1
#=GS A0A4R5QCY0_9PROT/95-249 AC A0A4R5QCY0.1
#=GS A0A1M6SQ38_9PROT/94-247 AC A0A1M6SQ38.1
#=GS A0A2T4V0Y1_VITXG/131-299 AC A0A2T4V0Y1.1
#=GS A0A086ZTN3_9BIFI/58-219 AC A0A086ZTN3.1
#=GS A0A369HXQ3_9BACT/88-248 AC A0A369HXQ3.1
#=GS A0A2R7TD33_9BURK/80-239 AC A0A2R7TD33.1
#=GS A0A2Z5GBL0_9BACT/84-251 AC A0A2Z5GBL0.1
#=GS A0A077FM32_9RICK/65-226 AC A0A077FM32.1
#=GS B9TQS5_RICCO/1-114 AC B9TQS5.1
#=GS A0A5C8WT03_9HYPH/135-299 AC A0A5C8WT03.1
#=GS A0A2A4FP30_9SPHN/106-267 AC A0A2A4FP30.1
#=GS A0A085G7S6_9ENTR/89-266 AC A0A085G7S6.1
#=GS Q2RMM0_RHORT/89-246 AC Q2RMM0.1
#=GS A0A512E466_9PROT/123-276 AC A0A512E466.1
#=GS A0A5M6IU90_9PROT/101-254 AC A0A5M6IU90.1
#=GS A0A2U8WF28_9HYPH/135-293 AC A0A2U8WF28.1
#=GS A0A0L0MF53_9BURK/108-261 AC A0A0L0MF53.1
#=GS A0A261EPU8_9BIFI/76-244 AC A0A261EPU8.1
#=GS A0A0Q4C5V3_9SPHN/106-267 AC A0A0Q4C5V3.1
#=GS A0A4R0Y6T6_9PROT/133-278 AC A0A4R0Y6T6.1
#=GS A0A212RV81_9PROT/93-252 AC A0A212RV81.1
#=GS A0A5M6II63_9PROT/91-244 AC A0A5M6II63.1
#=GS A0A149VV96_9PROT/178-333 AC A0A149VV96.1
#=GS F9ZUV5_ACICS/113-266 AC F9ZUV5.1
#=GS W6MDK4_9GAMM/69-228 AC W6MDK4.1
#=GS A0A4R4DIR9_9PROT/95-253 AC A0A4R4DIR9.1
#=GS A0A239ML35_9BACT/92-247 AC A0A239ML35.1
#=GS A0A4Q0SUR3_9BACT/139-303 AC A0A4Q0SUR3.1
#=GS A0A6M0IT36_9BACT/85-243 AC A0A6M0IT36.1
#=GS A0A5B2TAE1_9PROT/93-250 AC A0A5B2TAE1.1
#=GS A0A259TU50_9BACT/125-293 AC A0A259TU50.1
#=GS A0A0P0SKK0_9PSEU/67-227 AC A0A0P0SKK0.1
#=GS A0A8J2Y4G3_9PROT/99-254 AC A0A8J2Y4G3.1
#=GS A0A239MQC0_9BACT/81-245 AC A0A239MQC0.1
#=GS B4S9R5_PROA2/55-214 AC B4S9R5.1
#=GS A0A4R4D4S4_9PROT/103-264 AC A0A4R4D4S4.1
#=GS A0A3A9J8R2_9PROT/62-219 AC A0A3A9J8R2.1
#=GS A0A512E4K4_9PROT/122-280 AC A0A512E4K4.1
#=GS M1PAV6_9CORY/63-239 AC M1PAV6.1
#=GS A0A1S8D3A3_9PROT/130-287 AC A0A1S8D3A3.1
#=GS K9SP45_9CYAN/76-244 AC K9SP45.1
#=GS A0A1G5UQP8_9SPHN/106-267 AC A0A1G5UQP8.1
#=GS A0A502EWM8_9PROT/94-252 AC A0A502EWM8.1
#=GS A0A161H862_9RALS/120-298 AC A0A161H862.1
#=GS A0A6N7ZR85_9HYPH/97-249 AC A0A6N7ZR85.1
#=GS A0A2C7ADS6_9PROT/133-290 AC A0A2C7ADS6.1
#=GS A0A840HYW9_9SPHN/100-255 AC A0A840HYW9.1
#=GS A0A261G0T6_9BIFI/86-263 AC A0A261G0T6.1
#=GS A0A345YJE3_9SPHN/105-285 AC A0A345YJE3.1
#=GS A0A3G3GZ45_9BACT/61-218 AC A0A3G3GZ45.1
#=GS A0A1Y0GCX9_9PROT/121-282 AC A0A1Y0GCX9.1
#=GS U7LG16_9CORY/9-172 AC U7LG16.1
#=GS A0A4V3A985_9PROT/78-237 AC A0A4V3A985.1
#=GS A0A0U5BFK9_9PROT/86-233 AC A0A0U5BFK9.1
#=GS G8AGE1_9PROT/93-247 AC G8AGE1.1
#=GS A0A848FJK2_9BURK/39-198 AC A0A848FJK2.1
#=GS A0A1V2H2Q0_9PROT/85-239 AC A0A1V2H2Q0.1
#=GS N1MG14_9SPHN/106-267 AC N1MG14.1
#=GS A0A5M6IK78_9PROT/93-248 AC A0A5M6IK78.1
#=GS A0A097ID36_9CORY/77-251 AC A0A097ID36.1
#=GS A0A2S2CWM2_9PROT/92-251 AC A0A2S2CWM2.1
#=GS A0A1X7PY07_AZOLI/92-249 AC A0A1X7PY07.1
#=GS A0A4V2Z2A2_9BACT/91-248 AC A0A4V2Z2A2.1
#=GS A0A2G1QGQ5_9HYPH/130-288 AC A0A2G1QGQ5.1
#=GS I2GU79_9BACT/87-244 AC I2GU79.1
#=GS A0A1V2H656_9PROT/145-302 AC A0A1V2H656.1
#=GS A0A239MPH5_9BACT/121-288 AC A0A239MPH5.1
#=GS A0A8G2CP56_ACIRU/92-244 AC A0A8G2CP56.1
#=GS A0A6M0HNX3_9HYPH/135-293 AC A0A6M0HNX3.1
#=GS A0A562BRH0_9BURK/125-307 AC A0A562BRH0.1
#=GS A0A2U1VZS5_9PROT/92-251 AC A0A2U1VZS5.1
#=GS A0A3S2YL45_9HYPH/135-292 AC A0A3S2YL45.1
#=GS A0A5M6IMZ8_9PROT/89-244 AC A0A5M6IMZ8.1
#=GS A0A1I2SI41_9HYPH/141-299 AC A0A1I2SI41.1
#=GS A4XE01_NOVAD/106-267 AC A4XE01.1
#=GS E8X7Y6_GRATM/156-320 AC E8X7Y6.1
#=GS A0A1G6ZQM2_9GAMM/102-264 AC A0A1G6ZQM2.1
#=GS A0A7W3WG42_9HYPH/77-235 AC A0A7W3WG42.1
#=GS A0A255Z6H7_9PROT/94-252 AC A0A255Z6H7.1
#=GS A0A5B2TDB6_9PROT/135-292 AC A0A5B2TDB6.1
#=GS I1YI26_METFJ/39-198 AC I1YI26.1
#=GS A0A512IU44_9HYPH/77-235 AC A0A512IU44.1
#=GS A0A7S7NYM3_9BACT/101-259 AC A0A7S7NYM3.1
#=GS A0A4Q7XXL9_9BACT/91-296 AC A0A4Q7XXL9.1
#=GS A6WB38_KINRD/129-223 AC A6WB38.1
#=GS A0A2W2A9M6_9MICO/96-257 AC A0A2W2A9M6.1
#=GS A0A519XFG5_9HYPH/17-123 AC A0A519XFG5.1
#=GS A0A1D8KD09_9GAMM/69-224 AC A0A1D8KD09.1
#=GS A0A239LAW0_9BACT/94-255 AC A0A239LAW0.1
#=GS A0A1E3LZ13_9SPHN/106-267 AC A0A1E3LZ13.1
#=GS A0A6M8I0U2_9PROT/102-256 AC A0A6M8I0U2.1
#=GS A0A5C1YT47_9PROT/91-246 AC A0A5C1YT47.1
#=GS A0A1M6S6T3_9PROT/95-253 AC A0A1M6S6T3.1
#=GS A0A7W7ZK72_9BACT/111-276 AC A0A7W7ZK72.1
#=GS A0A076MY33_AMYME/78-235 AC A0A076MY33.1
#=GS A0A4U8V553_9BURK/125-301 AC A0A4U8V553.1
#=GS A0A3N1PQ59_9MICO/112-275 AC A0A3N1PQ59.1
#=GS A0A0Q4XCZ4_9HYPH/135-294 AC A0A0Q4XCZ4.1
#=GS A6WAH4_KINRD/132-213 AC A6WAH4.1
#=GS A6WAH4_KINRD/4-120 AC A6WAH4.1
#=GS A0A7W8E6K7_9BACT/122-282 AC A0A7W8E6K7.1
#=GS A0A212RI10_9PROT/102-264 AC A0A212RI10.1
#=GS A0A848FFW9_9BURK/74-233 AC A0A848FFW9.1
#=GS A0A541C0K3_9PROT/89-247 AC A0A541C0K3.1
#=GS A0A261G142_9BIFI/59-220 AC A0A261G142.1
#=GS A0A2C7A6C3_9PROT/97-255 AC A0A2C7A6C3.1
#=GS A0A1C3RH06_9PROT/132-292 AC A0A1C3RH06.1
#=GS A1K752_AZOSB/85-140 AC A1K752.1
#=GS A0A370GBA9_9COXI/84-245 AC A0A370GBA9.1
#=GS A0A0G3XNF4_9SPHN/106-267 AC A0A0G3XNF4.1
#=GS A0A225DHI5_9BACT/3-94 AC A0A225DHI5.1
#=GS A0A1V2DVK1_9GAMM/66-219 AC A0A1V2DVK1.1
#=GS A0A5R9J4X7_9PROT/87-240 AC A0A5R9J4X7.1
#=GS A0A1D8UYW0_9PROT/30-187 AC A0A1D8UYW0.1
#=GS A0A4Y3TYF6_9PROT/91-246 AC A0A4Y3TYF6.1
#=GS A0A1H9RJU0_9BURK/184-337 AC A0A1H9RJU0.1
#=GS A0A181C5V5_9PROT/91-246 AC A0A181C5V5.1
#=GS A0A5B2TC99_9PROT/89-245 AC A0A5B2TC99.1
#=GS A0A6P3Z7E2_ZIZJJ/95-253 AC A0A6P3Z7E2.1
#=GS Q1LJH8_CUPMC/94-258 AC Q1LJH8.1
#=GS A0A2A4I5X9_9SPHN/106-267 AC A0A2A4I5X9.1
#=GS A0A212RY65_9PROT/94-251 AC A0A212RY65.1
#=GS A0A5M6I707_9PROT/89-248 AC A0A5M6I707.1
#=GS A0A7C9FG03_9BACT/88-245 AC A0A7C9FG03.1
#=GS E3I760_RHOVT/123-281 AC E3I760.1
#=GS A1TJ61_ACIAC/85-238 AC A1TJ61.1
#=GS B8F0E5_THASP/145-305 AC B8F0E5.1
#=GS W2TIW4_NECAM/67-229 AC W2TIW4.1
#=GS A0A6B8W859_9CORY/75-249 AC A0A6B8W859.1
#=GS A0A519WZ39_9HYPH/135-231 AC A0A519WZ39.1
#=GS B1M9Q1_METRJ/188-346 AC B1M9Q1.1
#=GS A0A1R4B8A0_9VIBR/92-269 AC A0A1R4B8A0.1
#=GS A0A7S6WWL0_9MICC/74-250 AC A0A7S6WWL0.1
#=GS A0A1D8UY91_9PROT/81-239 AC A0A1D8UY91.1
#=GS A0A0J6T8I9_9HYPH/135-293 AC A0A0J6T8I9.1
#=GS A0A2U8VU53_9HYPH/136-295 AC A0A2U8VU53.1
#=GS C7JI89_ACEP3/90-246 AC C7JI89.1
#=GS A0A0Q8R4Q7_9SPHN/106-267 AC A0A0Q8R4Q7.1
#=GS A0A181C7D1_9PROT/86-233 AC A0A181C7D1.1
#=GS A0A0A1H7E4_9BURK/99-252 AC A0A0A1H7E4.1
#=GS A0A1I6N2C0_9BACT/80-244 AC A0A1I6N2C0.1
#=GS A0A2Z5EHQ8_9SPHN/107-268 AC A0A2Z5EHQ8.1
#=GS A0A177ILS5_9CORY/74-250 AC A0A177ILS5.1
#=GS A0A494W6V1_9SPHN/90-251 AC A0A494W6V1.1
#=GS A0A248JT01_9PROT/93-249 AC A0A248JT01.1
#=GS A0A1I7FWH5_9BURK/76-227 AC A0A1I7FWH5.1
#=GS A0A418NPQ8_9SPHN/106-267 AC A0A418NPQ8.1
#=GS A0A316EQC5_9BURK/134-316 AC A0A316EQC5.1
#=GS C7JJ54_ACEP3/91-247 AC C7JJ54.1
#=GS A0A0D6JB10_9HYPH/128-288 AC A0A0D6JB10.1
#=GS A0A840YD30_9PROT/95-252 AC A0A840YD30.1
#=GS A0A6M1T9L9_9BACT/66-230 AC A0A6M1T9L9.1
#=GS A0A1L6JHG1_9SPHN/106-267 AC A0A1L6JHG1.1
#=GS A0A840YAU5_9PROT/63-207 AC A0A840YAU5.1
#=GS A0A845BKF6_9PROT/92-248 AC A0A845BKF6.1
#=GS A0A509EFK7_9HYPH/145-305 AC A0A509EFK7.1
#=GS G7Z3N5_AZOL4/92-249 AC G7Z3N5.1
#=GS A0A1K0GTB5_9ACTN/82-247 AC A0A1K0GTB5.1
#=GS A0A7W6NNG2_9HYPH/138-296 AC A0A7W6NNG2.1
#=GS A0A2S6NHX8_RHOGL/91-248 AC A0A2S6NHX8.1
#=GS A0A7W8E875_9BACT/82-247 AC A0A7W8E875.1
#=GS A0A2N8KN11_9BURK/107-260 AC A0A2N8KN11.1
#=GS A0A5B2TEB4_9PROT/95-254 AC A0A5B2TEB4.1
#=GS A0A0Q4V3L2_9MICO/97-258 AC A0A0Q4V3L2.1
#=GS A0A1E1F851_9SPHN/90-251 AC A0A1E1F851.1
#=GS A0A4R5QGD6_9PROT/116-278 AC A0A4R5QGD6.1
#=GS A0A5R9J2K8_9PROT/91-244 AC A0A5R9J2K8.1
#=GS A0A5R9J2U2_9PROT/138-293 AC A0A5R9J2U2.1
#=GS A0A386EB41_9HYPH/135-293 AC A0A386EB41.1
#=GS B3EBU8_TRIL1/154-312 AC B3EBU8.1
#=GS A0A7Y9XY14_9SPHN/106-267 AC A0A7Y9XY14.1
#=GS A0A126Z7X0_9MICO/70-233 AC A0A126Z7X0.1
#=GS A0A087CF63_9BIFI/73-240 AC A0A087CF63.1
#=GS A0A4V6P639_9PROT/161-320 AC A0A4V6P639.1
#=GS A0A509EL53_9HYPH/67-223 AC A0A509EL53.1
#=GS A0A7W6BP19_9SPHN/121-274 AC A0A7W6BP19.1
#=GS A0A431VEN7_9PROT/95-259 AC A0A431VEN7.1
#=GS A0A8K1DD22_9ARCH/73-240 AC A0A8K1DD22.1
#=GS A0A1G7E3W8_9PROT/95-253 AC A0A1G7E3W8.1
#=GS A0A1X9LTM0_9MICO/90-252 AC A0A1X9LTM0.1
#=GS A0A7X4GHW8_9SPHN/106-267 AC A0A7X4GHW8.1
#=GS E8X7M4_GRATM/80-244 AC E8X7M4.1
#=GS A0A517R1A5_9BACT/90-256 AC A0A517R1A5.1
#=GS A0A212RLI4_9PROT/89-236 AC A0A212RLI4.1
#=GS A0A6M8I0V6_9PROT/61-218 AC A0A6M8I0V6.1
#=GS A0A087VW45_9BIFI/74-246 AC A0A087VW45.1
#=GS A0A6L9Y811_9BURK/51-207 AC A0A6L9Y811.1
#=GS A0A255Z932_9PROT/50-204 AC A0A255Z932.1
#=GS Q63PV2_BURPS/91-250 AC Q63PV2.1
#=GS A0A519Y5J1_9HYPH/95-253 AC A0A519Y5J1.1
#=GS A0A512E3H6_9PROT/79-248 AC A0A512E3H6.1
#=GS A0A430DKJ7_9SPHN/106-267 AC A0A430DKJ7.1
#=GS A0A840ZMI7_9HYPH/136-293 AC A0A840ZMI7.1
#=GS A0A1M5JBS6_9BACT/85-242 AC A0A1M5JBS6.1
#=GS A0A142XAE1_9BACT/85-242 AC A0A142XAE1.1
#=GS A0A6C2YUD3_9BACT/87-244 AC A0A6C2YUD3.1
#=GS A0A1M4YMQ3_9ACTN/16-147 AC A0A1M4YMQ3.1
#=GS A0A0K6H9K3_9NEIS/190-349 AC A0A0K6H9K3.1
#=GS A0A2S3ZTI7_ARTGL/119-280 AC A0A2S3ZTI7.1
#=GS A0A0C4YIB1_9BURK/108-290 AC A0A0C4YIB1.1
#=GS A0A255Z5Y3_9PROT/100-257 AC A0A255Z5Y3.1
#=GS G8ASS9_9PROT/95-259 AC G8ASS9.1
#=GS A0A0M2HYS4_9MICO/89-248 AC A0A0M2HYS4.1
#=GS F6IDQ2_9SPHN/106-267 AC F6IDQ2.1
#=GS C5ANU2_BURGB/101-265 AC C5ANU2.1
#=GS A0A3P0XJ09_9BACT/101-277 AC A0A3P0XJ09.1
#=GS A0A327LWR7_9PROT/103-262 AC A0A327LWR7.1
#=GS A0A4V2SJK1_9BURK/141-325 AC A0A4V2SJK1.1
#=GS A0A1G5IXT4_9HYPH/135-294 AC A0A1G5IXT4.1
#=GS I4YWW4_9HYPH/135-294 AC I4YWW4.1
#=GS A0A021X2T7_9HYPH/137-297 AC A0A021X2T7.1
#=GS A0A1X7Q9R7_AZOLI/93-250 AC A0A1X7Q9R7.1
#=GS A0A850H5K7_9SPHN/106-267 AC A0A850H5K7.1
#=GS A0A0B6TJP4_9CORY/70-244 AC A0A0B6TJP4.1
#=GS A0A5M6IPW8_9PROT/91-244 AC A0A5M6IPW8.1
#=GS A0A518U8D4_9PROT/68-228 AC A0A518U8D4.1
#=GS Q0K5B7_CUPNH/125-307 AC Q0K5B7.1
#=GS A0A8G2EYJ3_9PROT/72-223 AC A0A8G2EYJ3.1
#=GS Q93MJ1_CORJK/56-231 AC Q93MJ1.1
#=GS A0A239K0T5_9BACT/139-306 AC A0A239K0T5.1
#=GS V5SDM4_9HYPH/122-280 AC V5SDM4.1
#=GS A0A259TUW2_9BACT/121-288 AC A0A259TUW2.1
#=GS A0A270B2L7_9SPHN/106-267 AC A0A270B2L7.1
#=GS A0A845BJ51_9PROT/89-244 AC A0A845BJ51.1
#=GS B1M5G2_METRJ/135-294 AC B1M5G2.1
#=GS A0A6S6XVW9_9PROT/68-228 AC A0A6S6XVW9.1
#=GS Q5HXJ6_GLUOX/91-247 AC Q5HXJ6.1
#=GS A5FTW2_ACICJ/97-254 AC A5FTW2.1
#=GS A0A225E1C0_9BACT/85-242 AC A0A225E1C0.1
#=GS B1ZEV9_METPB/136-293 AC B1ZEV9.1
#=GS A0A653J0S4_9SPHN/106-267 AC A0A653J0S4.1
#=GS A0A0L0ME55_9BURK/107-238 AC A0A0L0ME55.1
#=GS A0A175R6U8_9HYPH/133-291 AC A0A175R6U8.1
#=GS A0A839V3M6_9PROT/46-208 AC A0A839V3M6.1
#=GS A0A7Y0BR89_9SPHN/106-267 AC A0A7Y0BR89.1
#=GS A0A4R5Q5U2_9PROT/97-252 AC A0A4R5Q5U2.1
#=GS A0A239F5Z8_9PROT/100-257 AC A0A239F5Z8.1
#=GS A1A2T9_BIFAA/65-234 AC A1A2T9.1
#=GS A0A250KN30_9GAMM/111-267 AC A0A250KN30.1
#=GS B3GW42_CORA7/74-250 AC B3GW42.1
#=GS A0A327LWL1_9PROT/96-253 AC A0A327LWL1.1
#=GS A0A387BM12_9MICO/69-217 AC A0A387BM12.1
#=GS A0A1L3ZX81_9SPHN/106-267 AC A0A1L3ZX81.1
#=GS A0A2C7A8U4_9PROT/89-246 AC A0A2C7A8U4.1
#=GS A0A327LXF8_9PROT/117-276 AC A0A327LXF8.1
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