#=GF ID SH3_16
#=GF AC PF18348.5
#=GF DE Bacterial dipeptidyl-peptidase Sh3 domain
#=GF AU El-Gebali S;0000-0003-1378-5495
#=GF SE ECOD:EUF03549
#=GF GA 25.80 25.80;
#=GF TC 25.80 25.80;
#=GF NC 25.70 25.70;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -E 1000 --cpu 4 -Z 75585367 HMM pfamseq
#=GF TP Domain
#=GF CL CL0010
#=GF RN [1]
#=GF RM 20944232
#=GF RT Structure of the gamma-D-glutamyl-L-diamino acid endopeptidase
#=GF RT YkfC from Bacillus cereus in complex with L-Ala-gamma-D-Glu:
#=GF RT insights into substrate recognition by NlpC/P60 cysteine
#=GF RT peptidases.
#=GF RA Xu Q, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X,
#=GF RA Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC,
#=GF RA Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A,
#=GF RA Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P,
#=GF RA Krishna SS, Kumar A, Lam WW, Marciano D, Miller MD, Morse AT,
#=GF RA Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ,
#=GF RA Trame CB, van den Bedem H, Weekes D, Wooten T, Yeh A, Hodgson
#=GF RA KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA,
#=GF RA Wilson IA;
#=GF RL Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010;66:1354-1364.
#=GF DR INTERPRO; IPR041382;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC This is the first of two N-terminal bacterial SH3 (SH3b) domains
#=GF CC found in bacterial dipeptidyl-peptidases VI such as
#=GF CC gamma-D-glutamyl-L-diamino acid endopeptidases. The first SH3b
#=GF CC domain plays an important role in defining substrate specificity
#=GF CC by contributing to the formation of the active site, such that
#=GF CC only murein peptides with a free N-terminal alanine are allowed
#=GF CC [1].
#=GF SQ 2333
#=GS A0A6I4TQE2_9SPHN/62-110 AC A0A6I4TQE2.1
#=GS A0A1I2RMM8_9HYPH/49-97 AC A0A1I2RMM8.1
#=GS A0A8G2EWE2_9PROT/49-97 AC A0A8G2EWE2.1
#=GS A0A1N7FVQ3_9SPHI/13-58 AC A0A1N7FVQ3.1
#=GS A0A1G9Q414_9SPHI/114-158 AC A0A1G9Q414.1
#=GS J0QYA4_9HYPH/44-92 AC J0QYA4.1
#=GS A0A0Q1A2I3_9SPHI/14-62 AC A0A0Q1A2I3.1
#=GS G2EHR2_9FLAO/13-60 AC G2EHR2.1
#=GS A0A6M4ITL4_9BACT/22-66 AC A0A6M4ITL4.1
#=GS W8IDB8_ENSAD/45-92 AC W8IDB8.1
#=GS A0A383TZK3_9FLAO/13-61 AC A0A383TZK3.1
#=GS A0A1Y5SBG3_9RHOB/41-87 AC A0A1Y5SBG3.1
#=GS Q1GLP0_RUEST/13-59 AC Q1GLP0.1
#=GS A0A1C1YX47_9HYPH/45-93 AC A0A1C1YX47.1
#=GS S5YYL7_PARAH/55-99 AC S5YYL7.1
#=GS U2P7P3_9BACT/47-93 AC U2P7P3.1
#=GS A0A8J8MTI8_9RHOB/42-88 AC A0A8J8MTI8.1
#=GS A0A2K2FTQ7_9SPHN/59-107 AC A0A2K2FTQ7.1
#=GS A0A3M8GE84_9FLAO/13-60 AC A0A3M8GE84.1
#=GS A0A654S7I7_9CYAN/25-73 AC A0A654S7I7.1
#=GS A0A179DFN2_9SPHI/16-63 AC A0A179DFN2.1
#=GS A0A2N4XA61_9BACT/119-166 AC A0A2N4XA61.1
#=GS A0A172T9H0_9DEIO/51-99 AC A0A172T9H0.1
#=GS A0A5D0RNY2_9RHOB/10-59 AC A0A5D0RNY2.1
#=GS A0A2P7TUQ6_9SPHI/16-63 AC A0A2P7TUQ6.1
#=GS E0U765_GLOV7/23-72 AC E0U765.1
#=GS A0A0M2XZ42_9SPHI/115-162 AC A0A0M2XZ42.1
#=GS A0A1G9BGK9_9SPHI/17-65 AC A0A1G9BGK9.1
#=GS A0A2S5AAF8_9FLAO/12-59 AC A0A2S5AAF8.1
#=GS A0A4R3P0T6_9HYPH/43-91 AC A0A4R3P0T6.1
#=GS A0A0W7WFQ5_9RHOB/41-87 AC A0A0W7WFQ5.1
#=GS A0A7C9BK56_9BACT/106-153 AC A0A7C9BK56.1
#=GS A0A4V1S9J1_9BACT/18-66 AC A0A4V1S9J1.1
#=GS H8XPC8_FLAIG/12-59 AC H8XPC8.1
#=GS A0A506UH40_9HYPH/43-91 AC A0A506UH40.1
#=GS K2KA54_9RHOB/40-86 AC K2KA54.1
#=GS A0A432VLV8_9SPHN/33-81 AC A0A432VLV8.1
#=GS A0A506UH97_9HYPH/45-93 AC A0A506UH97.1
#=GS A0A0M2PSC1_PROHO/16-65 AC A0A0M2PSC1.1
#=GS A0A6L5Z052_9RHOB/10-60 AC A0A6L5Z052.1
#=GS A0A0Q7SPP0_9CAUL/48-96 AC A0A0Q7SPP0.1
#=GS A0A4Q3Z2J2_9RHOB/40-85 AC A0A4Q3Z2J2.1
#=GS F0RMW6_DEIPM/9-56 AC F0RMW6.1
#=GS A0A6F8XJZ9_9ACTN/8-45 AC A0A6F8XJZ9.1
#=GS A0A2K9DWZ2_9FIRM/82-129 AC A0A2K9DWZ2.1
#=GS A0A844WA37_9RHOB/44-90 AC A0A844WA37.1
#=GS B2J9B4_NOSP7/33-81 AC B2J9B4.1
#=GS A0A085EPK8_9FLAO/12-60 AC A0A085EPK8.1
#=GS A0A176T4K7_9FLAO/13-60 AC A0A176T4K7.1
#=GS A0A4V2ML68_9SPHI/15-63 AC A0A4V2ML68.1
#=GS I9GHG7_9BACE/42-86 AC I9GHG7.1
#=GS A0A1G8P7Y6_9RHOB/42-90 AC A0A1G8P7Y6.1
#=GS A0A4Q1DCI9_9BACT/13-61 AC A0A4Q1DCI9.1
#=GS A0A1G4T5D0_9CAUL/63-111 AC A0A1G4T5D0.1
#=GS A0A2T7BI68_9BACT/13-62 AC A0A2T7BI68.1
#=GS A0A4Q1KKT9_9SPHN/67-115 AC A0A4Q1KKT9.1
#=GS A0A7W2FZE6_9FLAO/12-59 AC A0A7W2FZE6.1
#=GS A0A1I1JU69_9BACT/89-136 AC A0A1I1JU69.1
#=GS A0A558QU99_9SPHN/60-108 AC A0A558QU99.1
#=GS A0A1M6DF31_9RHOB/42-89 AC A0A1M6DF31.1
#=GS A0A418WNS8_9SPHN/93-141 AC A0A418WNS8.1
#=GS A0A1G9MYK1_9SPHI/15-62 AC A0A1G9MYK1.1
#=GS A0A1T5EXN4_9SPHI/23-71 AC A0A1T5EXN4.1
#=GS A0A401U6U7_9BACT/16-65 AC A0A401U6U7.1
#=GS A0A1B3MUF8_9SPHN/67-115 AC A0A1B3MUF8.1
#=GS A0A1G9IIG6_9SPHI/116-163 AC A0A1G9IIG6.1
#=GS A0A2K9MJ66_9RHOB/42-88 AC A0A2K9MJ66.1
#=GS A0A7X6JYY6_9RHOB/43-89 AC A0A7X6JYY6.1
#=GS A0A0M1JVD3_9CYAN/16-76 AC A0A0M1JVD3.1
#=GS A0A848K3U4_9HYPH/49-98 AC A0A848K3U4.1
#=GS A0A0N0JZV3_9CAUL/22-70 AC A0A0N0JZV3.1
#=GS A3JLP0_9RHOB/43-88 AC A3JLP0.1
#=GS A0A1Y4L0H2_9FIRM/207-253 AC A0A1Y4L0H2.1
#=GS A0A1H4HDQ9_9BACI/56-105 AC A0A1H4HDQ9.1
#=GS A0A4S5JH41_9HYPH/45-93 AC A0A4S5JH41.1
#=GS A0A1I0MZ96_9EURY/86-133 AC A0A1I0MZ96.1
#=GS A0A7D5RWC7_9BACT/16-65 AC A0A7D5RWC7.1
#=GS A0A502BQL3_9HYPH/44-92 AC A0A502BQL3.1
#=GS A0A1W2CMQ0_9FLAO/13-61 AC A0A1W2CMQ0.1
#=GS A0A367GT76_9SPHI/15-60 AC A0A367GT76.1
#=GS A0A0Q6ZBG4_9BRAD/42-91 AC A0A0Q6ZBG4.1
#=GS A0A1R3TP57_9HYPH/48-96 AC A0A1R3TP57.1
#=GS A0A1X7NLH9_AZOLI/17-63 AC A0A1X7NLH9.1
#=GS A0A2S0MN40_9RHOB/42-88 AC A0A2S0MN40.1
#=GS A0A1G4G4Z7_9BACT/87-132 AC A0A1G4G4Z7.1
#=GS F2ID16_FLUTR/15-63 AC F2ID16.1
#=GS A0A109QH31_9BACL/81-128 AC A0A109QH31.1
#=GS A0A433NK91_CHLFR/25-79 AC A0A433NK91.1
#=GS R7PMJ2_9CLOT/177-223 AC R7PMJ2.1
#=GS A0A1Y1CF41_9BACT/13-61 AC A0A1Y1CF41.1
#=GS A0A1D7QIA7_9SPHI/15-63 AC A0A1D7QIA7.1
#=GS A0A1X7IJY0_9SPHI/116-163 AC A0A1X7IJY0.1
#=GS A3UA94_CROAH/13-61 AC A3UA94.1
#=GS A0A7D4CGE7_9BACT/12-59 AC A0A7D4CGE7.1
#=GS A0A3E1NIE0_9BACT/13-61 AC A0A3E1NIE0.1
#=GS A0A1H6BXQ8_9RHOB/41-87 AC A0A1H6BXQ8.1
#=GS A0A8J7E1F9_9CYAN/18-65 AC A0A8J7E1F9.1
#=GS A0A1G7EHZ5_9PROT/44-91 AC A0A1G7EHZ5.1
#=GS A0A345ZY81_9HYPH/43-92 AC A0A345ZY81.1
#=GS A0A0A3HPU5_9BACL/12-59 AC A0A0A3HPU5.1
#=GS A0A370GQF5_9BACI/54-103 AC A0A370GQF5.1
#=GS K9PKU7_9CYAN/24-72 AC K9PKU7.1
#=GS A0A6I4IN23_9SPHI/13-65 AC A0A6I4IN23.1
#=GS A0A3M0MU81_9RHOB/43-89 AC A0A3M0MU81.1
#=GS A0A3P5WV69_9RHOB/40-86 AC A0A3P5WV69.1
#=GS A0A7K0E7B7_9FLAO/16-61 AC A0A7K0E7B7.1
#=GS A0A398B8L1_9BACI/54-103 AC A0A398B8L1.1
#=GS A0A5C7BDX7_9FLAO/13-61 AC A0A5C7BDX7.1
#=GS F2I3N4_PELSM/14-61 AC F2I3N4.1
#=GS A0A7W9A4V5_9CAUL/46-89 AC A0A7W9A4V5.1
#=GS A0A1G6EFE8_9HYPH/45-94 AC A0A1G6EFE8.1
#=GS A0A4S8RJQ0_9FLAO/13-60 AC A0A4S8RJQ0.1
#=GS A0A1W2DI75_9SPHI/15-63 AC A0A1W2DI75.1
#=GS A0A3E1NIJ9_9BACT/68-114 AC A0A3E1NIJ9.1
#=GS G5ZZV5_9PROT/156-203 AC G5ZZV5.1
#=GS A0A512DY17_9PROT/47-94 AC A0A512DY17.1
#=GS A0A1H7FZS3_9RHOB/44-90 AC A0A1H7FZS3.1
#=GS A0A0Q4CBD6_9SPHN/47-95 AC A0A0Q4CBD6.1
#=GS A0A1M5BGX0_9RHOB/47-92 AC A0A1M5BGX0.1
#=GS A0A1H9DRK0_9RHOB/41-87 AC A0A1H9DRK0.1
#=GS A0A0H4VSH4_9BACT/119-166 AC A0A0H4VSH4.1
#=GS A0A5D0S0M9_9RHOB/42-88 AC A0A5D0S0M9.1
#=GS A0A6G7ZN15_9SPHN/29-77 AC A0A6G7ZN15.1
#=GS A0A142HLS6_9BACT/9-56 AC A0A142HLS6.1
#=GS A0A8J7DHV0_9CYAN/25-73 AC A0A8J7DHV0.1
#=GS A0A4R1M1W5_9SPHI/14-62 AC A0A4R1M1W5.1
#=GS A0A8J7IKY8_9RHOB/42-88 AC A0A8J7IKY8.1
#=GS A0A1X4J2C4_9RHOB/21-67 AC A0A1X4J2C4.1
#=GS H1Y7K0_9SPHI/13-59 AC H1Y7K0.1
#=GS A0A0Q6KG87_9HYPH/45-93 AC A0A0Q6KG87.1
#=GS A0A841C047_9ACTN/49-97 AC A0A841C047.1
#=GS A0A2H6BIE4_9HYPH/45-93 AC A0A2H6BIE4.1
#=GS A0A519LLB6_9FLAO/13-61 AC A0A519LLB6.1
#=GS A0A4Z0LCW1_9FLAO/12-60 AC A0A4Z0LCW1.1
#=GS A0A8J7G0S5_9CYAN/27-79 AC A0A8J7G0S5.1
#=GS A0A142ELM8_9BACT/25-75 AC A0A142ELM8.1
#=GS A0A285PG69_9HYPH/42-91 AC A0A285PG69.1
#=GS A0A1I5NU01_9BACT/119-167 AC A0A1I5NU01.1
#=GS A0A222FB69_9HYPH/45-94 AC A0A222FB69.1
#=GS A0A521E3Y7_9BACT/13-59 AC A0A521E3Y7.1
#=GS A0A839YYA6_9SPHN/44-92 AC A0A839YYA6.1
#=GS D0LKD0_HALO1/846-891 AC D0LKD0.1
#=GS A0A1Q8ZTL9_9HYPH/47-95 AC A0A1Q8ZTL9.1
#=GS A0A1E3H7T8_9HYPH/15-64 AC A0A1E3H7T8.1
#=GS A0A1J1DYU0_9FLAO/23-70 AC A0A1J1DYU0.1
#=GS F4XQW0_9CYAN/22-71 AC F4XQW0.1
#=GS G2Z0I0_FLABF/12-60 AC G2Z0I0.1
#=GS A0A0P6YJB0_9CHLR/92-134 AC A0A0P6YJB0.1
#=GS A0A395JZX0_9FLAO/112-159 AC A0A395JZX0.1
#=GS A0A1I7IZA6_9FLAO/13-60 AC A0A1I7IZA6.1
#=GS A0A4R6IM27_9SPHI/15-63 AC A0A4R6IM27.1
#=GS W4V043_9BACE/43-87 AC W4V043.1
#=GS A0A1W2H5V6_9BACT/125-172 AC A0A1W2H5V6.1
#=GS A0A1E5UFI9_9FLAO/1-39 AC A0A1E5UFI9.1
#=GS E4T4A0_PALPW/12-60 AC E4T4A0.1
#=GS A0A1Z4IWC1_9CYAN/25-79 AC A0A1Z4IWC1.1
#=GS A0A1H8T232_9SPHI/13-58 AC A0A1H8T232.1
#=GS A0A4U1C5B1_9SPHI/106-153 AC A0A4U1C5B1.1
#=GS W4V5T8_9FIRM/1-37 AC W4V5T8.1
#=GS A0A368JRX9_9BACT/104-151 AC A0A368JRX9.1
#=GS A0A7D4AB44_9BACT/6-53 AC A0A7D4AB44.1
#=GS A0A328VG26_9CHLR/14-60 AC A0A328VG26.1
#=GS A0A3T0MXL7_9RHOB/13-59 AC A0A3T0MXL7.1
#=GS L8JMF7_9BACT/16-65 AC L8JMF7.1
#=GS A0A2S8WA26_9CAUL/54-98 AC A0A2S8WA26.1
#=GS A0A076HTB0_9BACT/3-50 AC A0A076HTB0.1
#=GS A0A0M0GPU9_9BACI/53-101 AC A0A0M0GPU9.1
#=GS A0A257KCZ7_9FLAO/12-60 AC A0A257KCZ7.1
#=GS A0A6N6M9X5_9FLAO/13-60 AC A0A6N6M9X5.1
#=GS A0A3G2LBM6_9FLAO/13-61 AC A0A3G2LBM6.1
#=GS A0A5M6ZJ63_9PROT/13-61 AC A0A5M6ZJ63.1
#=GS A0A1D7Y0W7_9FLAO/13-61 AC A0A1D7Y0W7.1
#=GS A0A074KY56_9BACT/25-74 AC A0A074KY56.1
#=GS A0A1M6C4F7_9BACT/47-94 AC A0A1M6C4F7.1
#=GS A0A2T0XN12_9BACT/13-59 AC A0A2T0XN12.1
#=GS A0A0Q9JA18_9HYPH/45-93 AC A0A0Q9JA18.1
#=GS A0A1H4CTA8_BIZPA/13-60 AC A0A1H4CTA8.1
#=GS Q5LBQ9_BACFN/117-162 AC Q5LBQ9.1
#=GS A0A2T0U602_9SPHI/113-159 AC A0A2T0U602.1
#=GS A0A238IZ15_9RHOB/26-72 AC A0A238IZ15.1
#=GS A0A3N5B2P5_9THEO/13-60 AC A0A3N5B2P5.1
#=GS A0A4Y8LG06_9BACL/50-100 AC A0A4Y8LG06.1
#=GS Q7V9Z6_PROMA/27-82 AC Q7V9Z6.1
#=GS A0A4Y8RUZ0_9HYPH/45-94 AC A0A4Y8RUZ0.1
#=GS A0A401ZGZ8_9CHLR/18-64 AC A0A401ZGZ8.1
#=GS A0A2T1DTM6_9CYAN/29-84 AC A0A2T1DTM6.1
#=GS A0A519QXI5_9SPHN/65-99 AC A0A519QXI5.1
#=GS A0A8K0Y0Z5_9RHOB/42-88 AC A0A8K0Y0Z5.1
#=GS E3I6V7_RHOVT/44-92 AC E3I6V7.1
#=GS D7VME7_SPHSI/13-61 AC D7VME7.1
#=GS A0A3N4PH08_9BACT/13-62 AC A0A3N4PH08.1
#=GS A0A1H5WUN1_9SPHI/111-158 AC A0A1H5WUN1.1
#=GS A0A369PXU7_9SPHI/105-152 AC A0A369PXU7.1
#=GS A0A2K3UTW4_9DEIO/49-98 AC A0A2K3UTW4.1
#=GS A0A0B1ZQ63_9SPHN/50-98 AC A0A0B1ZQ63.1
#=GS A0A1D7W7I1_9MICO/106-158 AC A0A1D7W7I1.1
#=GS A0A1G6VHD9_NIADE/13-62 AC A0A1G6VHD9.1
#=GS A0A380MM24_9GAMM/33-81 AC A0A380MM24.1
#=GS A0A344PH35_9RHOB/42-88 AC A0A344PH35.1
#=GS A0A7T1HW67_9SYNE/40-93 AC A0A7T1HW67.1
#=GS A0A841LCR6_9SPHN/55-103 AC A0A841LCR6.1
#=GS A0A1T4R7X2_9BACT/13-61 AC A0A1T4R7X2.1
#=GS A0A841H409_9BACT/94-139 AC A0A841H409.1
#=GS A0A4D7BTP4_9SPHN/24-72 AC A0A4D7BTP4.1
#=GS A0A5Q0JYR7_9FLAO/13-60 AC A0A5Q0JYR7.1
#=GS R6KQ93_9BACE/117-162 AC R6KQ93.1
#=GS A0A316BZZ6_PSESE/44-92 AC A0A316BZZ6.1
#=GS Q3SVY1_NITWN/42-91 AC Q3SVY1.1
#=GS B9JYU6_AGRVS/43-91 AC B9JYU6.1
#=GS A0A316JJI5_9HYPH/44-92 AC A0A316JJI5.1
#=GS M5RIA6_9BACT/108-155 AC M5RIA6.1
#=GS A0A2N3IIF8_9BACT/15-65 AC A0A2N3IIF8.1
#=GS A0A5Q0JT11_9FLAO/116-162 AC A0A5Q0JT11.1
#=GS A0A3N4MMK2_9BACT/13-62 AC A0A3N4MMK2.1
#=GS A0A1S1T4W3_9HYPH/45-93 AC A0A1S1T4W3.1
#=GS A0A0Q9I4R0_9HYPH/45-93 AC A0A0Q9I4R0.1
#=GS A0A8J7FS15_9FLAO/13-61 AC A0A8J7FS15.1
#=GS A0A369TRI1_9RHOB/41-89 AC A0A369TRI1.1
#=GS A0A2K8VAI2_9FLAO/12-59 AC A0A2K8VAI2.1
#=GS A0A1W2GRX2_9BACT/112-158 AC A0A1W2GRX2.1
#=GS A0A4Z0YA45_9FIRM/13-59 AC A0A4Z0YA45.1
#=GS Q2CCU9_OCEGH/46-92 AC Q2CCU9.1
#=GS A0A4Q1ISF9_9FLAO/13-61 AC A0A4Q1ISF9.1
#=GS D5ANE4_RHOCB/43-88 AC D5ANE4.1
#=GS A0A1K2IPG9_9FLAO/13-60 AC A0A1K2IPG9.1
#=GS A0A1H9RFN4_9BACI/281-328 AC A0A1H9RFN4.1
#=GS A0A1L7I8K2_9FLAO/13-60 AC A0A1L7I8K2.1
#=GS A0A370LA81_9HYPH/45-93 AC A0A370LA81.1
#=GS A0A1N6EYZ1_9BACT/13-62 AC A0A1N6EYZ1.1
#=GS A0A6G6FGW2_9RHOB/42-88 AC A0A6G6FGW2.1
#=GS A0A8J3DQN6_9HYPH/44-91 AC A0A8J3DQN6.1
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A1UU61_BARBK/44-92 ........lfkdks------T.T.SE..MQTECLF.GEELL..IFE...........QG..ET..R.............SWG........Q.......S.......L.......K........D........G....YVGYIDTQAL...............
#=GC seq_cons ..............lptpPp..s.up..hsoQlLh.G-thp..Vl-...........pp..ss..W.............shl........p.......s.......s.......h........D........G....YsGWlstpt................
//
