#=GF ID   SP2_C
#=GF AC   PF20752.1
#=GF DE   Structural protein 2 C-terminal domain
#=GF AU   Griffiths-Jones SR;0000-0001-6043-807X
#=GF SE   Pfam-B_1375 (release 6.4)
#=GF GA   25.00 25.00;
#=GF TC   30.80 89.40;
#=GF NC   24.60 20.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -E 1000 -Z 75585367 HMM pfamseq
#=GF TP   Domain
#=GF CL   CL0504
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This entry represents the third domain of structural protein 2
#=GF CC   of the hepatitis E virus. This domain has a RIFT-like fold. The
#=GF CC   high basic amino acid content of this protein has lead to the
#=GF CC   suggestion of a role in viral genomic RNA encapsidation.
#=GF SQ   3
#=GS F5BB18_9VIRU/347-552  AC F5BB18.1
#=GS CAPSD_HEVCH/536-604   AC Q81871.1
#=GS CAPSD_HEVCH/457-537   AC Q81871.1
F5BB18_9VIRU/347-552             .QPISQFTFHFKTGDVLVIQ-----------GSFKAPTSRPNNWNVQEFSISRILNITNGTSTTNILVFEKWTLDGNLPQIKNTYGLIGVHYFPASISPVGTSTFDNIIGDCKVFAGTATDSMLTPGPGSITVTFLSQTRGFLSQTELTQGLIAASSTMDTTDSS---LTRQASQPMEVDGFLSGLIPSTPLCNMVNNTFSCGNSDSQATSRSAVHSLGPN.
CAPSD_HEVCH/536-604              f-------------------------------------------------------------------------------------------------------------------------------------FVLPLRGKLSFWEAGTTKAGYPYNYNTTASDQLLVENAAGHRVAISTYTTSL-------------------GAGPVSISAVAVLAPH.
CAPSD_HEVCH/457-537              .APSRPFSV-LRANDVLWLSLTAAEYDQSTYGSSTGPVYVSD-------SVTLVNVATGAQAVARSLDWTKVTLDGR----------------PLSTTQQYSKTF--------------------------------------------------------------------------------------------------------------------f
#=GC seq_cons                    .tP.p.Foh.h+ssDVLhlp...........GS.puPs.hss.......Slohl.shTsupussp.LsapKhTLDGp................PhSho..hopTF.............................Fl..hRGhLS.hEhspshhuhs.shsTTsSs...lpptAup.htlssahouL...................sutssShSAVtsLuPp.
//