#=GF ID Sm_like
#=GF AC PF16243.9
#=GF DE Sm_like domain
#=GF AU Chang Y;0000-0002-2418-3433
#=GF SE Jackhmmer JCSG target GN7729A and PDB 3BY7
#=GF GA 29.40 29.40;
#=GF TC 29.40 29.60;
#=GF NC 29.00 28.70;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 75585367 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF RN [1]
#=GF RM 19173316
#=GF RT Crystal structure of a novel Sm-like protein of putative
#=GF RT cyanophage origin at 2.60 A resolution.
#=GF RA Das D, Kozbial P, Axelrod HL, Miller MD, McMullan D, Krishna SS,
#=GF RA Abdubek P, Acosta C, Astakhova T, Burra P, Carlton D, Chen C,
#=GF RA Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Elsliger MA,
#=GF RA Ernst D, Farr C, Feuerhelm J, Grzechnik A, Grzechnik SK, Hale J,
#=GF RA Han GW, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW,
#=GF RA Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E,
#=GF RA Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R,
#=GF RA Rife CL, Sefcovic N, Sudek S, Tien H, Trame C, Trout CV, van den
#=GF RA Be, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Deacon AM,
#=GF RA Godzik A, Lesley SA and Wilson IA.
#=GF RL Proteins 75 (2), 296-307 (2009)
#=GF DR INTERPRO; IPR032600;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC This domain, approximately 150 residues, is mainly found in
#=GF CC several uncharacterized proteins in various Prochlorococcus and
#=GF CC Synechococcus species. The crystal structure of ECX21941 reveals
#=GF CC unexpected similarity to Sm/LSm proteins, which are important
#=GF CC RNA-binding proteins, despite no detectable sequence similarity
#=GF CC [1]. The specific function of this family is unknown, but the
#=GF CC structure analysis of ECX21941 indicates nucleic acid-binding
#=GF CC capabilities and suggests a role in RNA and/or DNA processing
#=GF CC [1].
#=GF SQ 60
#=GS Q0QZ83_BPSYS/14-98 AC Q0QZ83.1
#=GS H6BI80_9CAUD/14-98 AC H6BI80.1
#=GS V5UUF3_9CAUD/14-98 AC V5UUF3.1
#=GS E3SSX8_9CAUD/26-106 AC E3SSX8.1
#=GS Q58LI1_BPPRS/19-103 AC Q58LI1.1
#=GS E3SMV9_9CAUD/26-106 AC E3SMV9.1
#=GS A0A345AWJ7_9CAUD/14-98 AC A0A345AWJ7.1
#=GS F5B3R8_9CAUD/10-97 AC F5B3R8.1
#=GS A0A222YY30_9CAUD/9-90 AC A0A222YY30.1
#=GS E3SJ19_9CAUD/9-91 AC E3SJ19.1
#=GS E3SQ95_9CAUD/14-98 AC E3SQ95.1
#=GS G8EXL8_9CAUD/14-98 AC G8EXL8.1
#=GS A0A6G8R7E2_9CAUD/14-97 AC A0A6G8R7E2.1
#=GS E3SM34_9CAUD/14-98 AC E3SM34.1
#=GS A0A0E3FDD8_9CAUD/14-98 AC A0A0E3FDD8.1
#=GS A0A482MPE6_9CAUD/14-98 AC A0A482MPE6.1
#=GS R9S5C1_9CAUD/14-98 AC R9S5C1.1
#=GS H8ZNB9_9CAUD/14-98 AC H8ZNB9.1
#=GS M4QDZ9_9CAUD/14-98 AC M4QDZ9.1
#=GS E3SR20_9CAUD/14-98 AC E3SR20.1
#=GS A0A1D8KKE5_9CAUD/8-89 AC A0A1D8KKE5.1
#=GS A0A127KLT3_9CAUD/14-98 AC A0A127KLT3.1
#=GS A0A1D8KS28_9CAUD/14-98 AC A0A1D8KS28.1
#=GS A0A0E3F1V6_9CAUD/14-98 AC A0A0E3F1V6.1
#=GS M4SK26_9CAUD/14-98 AC M4SK26.1
#=GS A0A6G8R626_9CAUD/9-92 AC A0A6G8R626.1
#=GS A0A0E3HUU6_9CAUD/14-100 AC A0A0E3HUU6.1
#=GS A0A873W9Z9_9CAUD/14-99 AC A0A873W9Z9.1
#=GS M1UG04_9CAUD/14-99 AC M1UG04.1
#=GS Q58ML1_BPPRM/8-89 AC Q58ML1.1
#=GS V5URD5_9CAUD/8-89 AC V5URD5.1
#=GS E3SNQ0_9CAUD/14-98 AC E3SNQ0.1
#=GS A0A0K0KVT4_9CAUD/9-90 AC A0A0K0KVT4.1
#=GS E3SKH7_9CAUD/14-98 AC E3SKH7.1
#=GS A0A1D7SLJ6_9CAUD/1-84 AC A0A1D7SLJ6.1
#=GS M1TVM7_9CAUD/14-99 AC M1TVM7.1
#=GS Q5GQM5_BPSYP/8-89 AC Q5GQM5.1
#=GS M4QHD7_9CAUD/9-89 AC M4QHD7.1
#=GS M4PY39_9CAUD/14-98 AC M4PY39.1
#=GS M4QHK7_9CAUD/8-89 AC M4QHK7.1
#=GS R9TQ41_9CAUD/14-98 AC R9TQ41.1
#=GS A0A482IE97_9CAUD/8-93 AC A0A482IE97.1
#=GS A0A0E3ETF8_9CAUD/14-98 AC A0A0E3ETF8.1
#=GS A0A127KMH7_9CAUD/8-89 AC A0A127KMH7.1
#=GS I3ULC5_9CAUD/14-102 AC I3ULC5.1
#=GS A0A514ABL0_9CAUD/9-90 AC A0A514ABL0.1
#=GS A0A2S1GL21_9CAUD/14-98 AC A0A2S1GL21.1
#=GS A0A1D7SBD8_9CAUD/14-98 AC A0A1D7SBD8.1
#=GS E3SIF2_9CAUD/14-98 AC E3SIF2.1
#=GS E3SPL5_9CAUD/8-89 AC E3SPL5.1
#=GS A0A879R3P3_9CAUD/8-87 AC A0A879R3P3.1
#=GS A0A1D8KSJ5_9CAUD/1-84 AC A0A1D8KSJ5.1
#=GS M4QRZ0_9CAUD/8-88 AC M4QRZ0.1
#=GS A0A873WAX1_9CAUD/8-89 AC A0A873WAX1.1
#=GS A0A0C5AB13_9CAUD/14-97 AC A0A0C5AB13.1
#=GS M4SQ50_9CAUD/14-101 AC M4SQ50.1
#=GS A0A3G3M692_9CAUD/14-98 AC A0A3G3M692.1
#=GS H8ZMM1_9CAUD/14-98 AC H8ZMM1.1
#=GS A0A4Y5P0P8_9CAUD/9-90 AC A0A4Y5P0P8.1
#=GS E3SK32_9CAUD/14-100 AC E3SK32.1
Q0QZ83_BPSYS/14-98 ..IFKLNNGEEVVGK..AV..LTDD..Q..GE.TLVFISNPVVIETYTR.EL.DSGKIS.R...GMGFSHWMQMSDEEFFILREKDIIALGTLQP.EYVIMYE........
H6BI80_9CAUD/14-98 ..VIKLTNGEEILAK..AV..LTED..E..GE.TLIFVSSPVLIQNVMK.EL.PDGKVL.K...AMGFARWMQMSDEDFFILREKDIITIASMSR.EVMFMYE........
V5UUF3_9CAUD/14-98 ..IFKLLNGEEVLGK..AV..LTED..D..GE.TLAFVQDPVCINLITK.EV.GEHKIV.R...GMGFSKWMQLSDEEFFILREKDILTVASMSK.EISILYD........
E3SSX8_9CAUD/26-106 .a-IKLVSGEELLSM..VT..SVHD..E..NG.DYIIVENPIEVEEVIM.PN.KQ----.A...GAKVQPWMKFSREEQFVIPKEHIITIVEVTE.EVAIFY-h.......
Q58LI1_BPPRS/19-103 ..VLKLVSGEEVLGK..AV..LTNE..G..NE.TLCFIQNPIAVQMVER.EL.DGDRLA.R...GIGFSKWMQLSDEDFYVIREKDILTISAMSK.QCIFMYE........
E3SMV9_9CAUD/26-106 .a-IKLVSGEELLSM..VT..SVHD..E..NG.DYLIVENPIEVEEVML.PN.KQ----.A...GAKVQPWMKFSREEQFVIPKEHIITIVEVAE.EVAVFY-h.......
A0A345AWJ7_9CAUD/14-98 ..IFKLVSGEEILAK..AV..MTED..R..GE.SLIFMSDPVSVLPITK.DV.GEQKIL.R...GMGFSKWIPMSDEEFFILREKDIMTMATMSR.PVKLMYD........
F5B3R8_9CAUD/10-97 .t-LKLTTGEEVLAE..VVheIDKN..T..GD.DFFVVSNPIVINETTKiDY.QRGAIV.S...GLVPKKWMLYANDDMAIVHKHHVISVSELDK.-------fgiefyf.
A0A222YY30_9CAUD/9-90 .t-LKLKSGEEIFAR..VA..ATEE..D..DR.TLLLVSNPVVVNEIKS.RM.----GV.V...GYKVEPWLKTTTEDMFILNISDVLTMSESSDiEMIMMY-q.......
E3SJ19_9CAUD/9-91 .t-VKLKSGEEIFAK..VA..ASDE..D..DR.TLLLVTNPVVVSEIKT.KT.GSPM--.-...GYRVEPWLKTTTDDMFVINIDNVLTMSESSDiEMIMMY-q.......
E3SQ95_9CAUD/14-98 ..IFKLVNGEEVLGK..AI..LTQD..E..TE.TLVFIQDPVCVQVVTR.ES.EDGKVT.R...GMGFTKWMQLSEEDFYIIREKDIITVSSMSK.EVIFMYE........
G8EXL8_9CAUD/14-98 ..IFKLLNGEEVLGK..AV..LTED..E..GQ.TLVFIQDPVCTQIVTK.ET.DDGKTI.R...GMGFAKWMQLSDEDFFILQEKDILTVTSMSK.EISYLYE........
A0A6G8R7E2_9CAUD/14-97 ..VFKLLNGEEVLGK..AV..LTED..N..EE.TLVFIQNPVCTQVITK.EI.E-GKTV.R...GVGFANWMQFSDEDFYIIREKDILTVTSMSR.EMTLLYE........
E3SM34_9CAUD/14-98 ..IFKLVSGEEILAK..AV..MTED..R..GE.SLIFMSDPVSVLPITK.DV.GEQKIL.R...GMGFSKWIPMSDEEFFILREKDIMTMATMSR.PVKLMYD........
A0A0E3FDD8_9CAUD/14-98 ..IFKLTSGEEILGK..AI..ITED..E..GE.SLVFISSPVSVQQIVK.ET.DGGKVI.K...GFGFSKWMQMSDEEFFILREKDILTVASMSK.EIIFMYE........
A0A482MPE6_9CAUD/14-98 ..IFKLTNGEEVLSK..AL..LADD..E..GE.TIIFLTNPVTLEIFTR.ET.DDGKVA.K...GMGFSHWMQLSDEDFFIVREKDIISLATMSR.ETIIMYE........
R9S5C1_9CAUD/14-98 ..VIKLVSGEEILGK..AV..LTDD..H..GE.SLCFIQNPVAVQMIER.DL.EGNRLG.R...GIGFSKWMQLSDEDFYVIREKDILTISAMSK.ECIFMYE........
H8ZNB9_9CAUD/14-98 ..IFKMTNGEEVLSR..AV..ITVD..Q..NE.SLIFLQDPVMVHVMTK.PM.SETKMV.R...GVGFVKWQQLSDEEFFVVKVKDVVCIATMSR.EVQLLYE........
M4QDZ9_9CAUD/14-98 ..IFKLTNGEEVLAK..AV..VTQD..Q..NE.SLCFLQDPVMVHVINK.PM.SENKVM.R...GVGFVKWQQLSDEEFFVVKEKDVVCIATMSR.EVQMLYE........
E3SR20_9CAUD/14-98 ..VFKLLNGEEVLGK..AV..LTED..E..GE.TLVFLQDPVCTQVIHK.EL.EEGKMI.R...GVGFSKWMQFSNEDFFILREKDILTVTSMSK.EVSYLYE........
A0A1D8KKE5_9CAUD/8-89 .t-IKLVSGEELVSK..VC..YLTD..E..DS.--LLLDKPLLVDKVTQ.K-.KSGKVV.E...GFSLKEWIASTYDEMFIIEMNKVMTISELDK.KIEAYY-v.......
A0A127KLT3_9CAUD/14-98 ..VIKLTNGEEILAK..TV..LTED..E..GE.TLVFISSPVLIQHVMK.DL.PDGKTI.K...AMGFATWMQMSDEEFFILREKDIITIASMSK.EVIFMYE........
A0A1D8KS28_9CAUD/14-98 ..VFKLLNGEEVLGK..AV..LTED..N..GE.TLVFIQNPVCTQIITK.ET.DEGRTI.R...GVGFAKWMQFSDEDFFILREKDILTVTSMSK.QVTFMYE........
A0A0E3F1V6_9CAUD/14-98 ..VIKLLNGEEVLGK..AV..LTED..A..GE.SLCFISRPVQIQSVTK.EL.PDGKII.K...GMGFAEWMQLSDEDFFIIREKDIVAVASMSK.AVQMMYQ........
M4SK26_9CAUD/14-98 ..IFKLVNGEEVLGK..AI..LTQD..E..TE.TLVFIQDPVCVQVVTR.ES.EDGKVT.R...GMGFTKWMQLSEEDFYIIREKDIITVSSMSK.EVIFMYE........
A0A6G8R626_9CAUD/9-92 .t-IKMVTGEEVLAE..VM..HTEE..N..GA.RFLILHNPIVMEET-F.DN.EGGQFK.V...GQTARKWLQYATDDMVIVHFDKVLTMSEMNK.-------ygaeqyk.
A0A0E3HUU6_9CAUD/14-100 .s-IKLINGDELIAR..AL..VSLDdtT..NQ.ELVYLEDPLLVQTFTK.EI.DGEKAV.R...GLGFTKWQNFSDEDFYIISSDTILTMAALSK.EMVFVYE........
A0A873W9Z9_9CAUD/14-99 .n-VKLISGDEIIGKgfAS..VEEE..T..NE.TLVYIQDPLEITVVIK.E-.DEGKMS.K...GVGLNKWINFSDEDFFIVREKDVVCIAGCSQ.EVIMMYE........
M1UG04_9CAUD/14-99 .s-IKLMNGEEIIAR..AI..VTKD..V..DEkDIVYVEDPLVVQSFTK.EV.AGDKAI.K...GMGFTKWQNFSDEEFFIINAESILTMASLSK.EMVFVYE........
Q58ML1_BPPRM/8-89 ..VIKLVTGEEIFAL.iSV..EEND..H..GN.PVVLVQTPVVMKVLSH.AH.GQY---.-...-VKIKPWLELADEDMYLINYDRVVTMTQVKD.-------sdligfye
V5URD5_9CAUD/8-89 .t-IKLVSGEELVSK..VC..YLPD..E..DK.--IMLEKPLVVETARQ.KK.G-QVEV.S...GFQLKEWIQATFDQMFIIDRDKIITISEVEG.KISDFY-k.......
E3SNQ0_9CAUD/14-98 ..VFKLVSGEEVLGK..AV..LTED..S..GE.TLCFVQNPVSTVVINN.KD.DSGRNI.R...GVGFAKWMQFSDEDFYIIREKDVLTVSSMSK.EISFMYE........
A0A0K0KVT4_9CAUD/9-90 .t-IKLKTGEELFAR..VS..ASDE..E..DR.IVLLVSHPIIIEQVKI.K-.---NSL.H...CYKFEPWLKSSNEDLFIINLDDILTLTESDNiEMIMF--yq......
E3SKH7_9CAUD/14-98 ..IFKLVSGEEILAK..AV..LTED..K..GE.SLIFISDPVSVQAITK.EI.GNEKVV.R...GMGFTKWIPMSEEDFYILREKDIMTIATMSK.PIVLMYE........
A0A1D7SLJ6_9CAUD/1-84 mk-----YGAEILAV..AM..VSHD..EdtNT.DVVYVQNPVEVNVMIH.ER.PDGKSV.R...GMGFSKWCAFSNEEFYIINGNDILTMSALSN.EIIILYE........
M1TVM7_9CAUD/14-99 .s-IKLMNGEEIIAR..AI..VTKD..V..DEkDIVYVEDPLVVQSFTK.EV.AGDKAI.K...GMGFTKWQNFSDEEFFIINAESILTMASLSK.EMVFVYE........
Q5GQM5_BPSYP/8-89 .t-IKLKSGEEIIAK..VS..YMSE..E..D-.S-LLVEKPLLVESHTQ.K-.KNGKRL.E...GFVLKEWIRSSYEDMFIIRMEQVITMSELDD.RIKNFY-v.......
M4QHD7_9CAUD/9-89 .a-IKLVSGEELLSM..VT..SVHD..E..NG.DYLIVENPIEVEEVIL.PN.KQ----.A...GAKVQPWMKFSREDQFVIPKDKVITIVEVAE.DVEVFY-h.......
M4PY39_9CAUD/14-98 ..VFKLLNGEEVLGK..AV..LTED..N..GE.TLVFIQSPVCTQVVTK.ET.EDGRTV.R...GVGFAKWMQFSDEDFFILREKDILTVTSMSK.QVSFMYE........
M4QHK7_9CAUD/8-89 .t-VKLTSNEEIIAK..VC.yLTEE..-..--.DCLLVEKPLLVTRANQ.-K.RNGRLV.E...GFSLSDWVVSSYEELFIIKMNQVVTLTESDE.RIVGFYE........
R9TQ41_9CAUD/14-98 ..IFKLLNGEEVLGK..AV..LTED..D..GE.SLVFIQDPVCLQMITK.EL.DEGKVI.R...GIGFSKWMTLSDEEFFILREKDIVTVASMNK.ETIFMYE........
A0A482IE97_9CAUD/8-93 .t-VKLLSGEEVLCQ..AI..HVEE..E..GQ.ELYLLSDPIIIDESSR.LDpERGIAM.S...GMAPRMWMMYSNDDLVAVRKEHVISISEMDK.FGK----sfyk....
A0A0E3ETF8_9CAUD/14-98 ..IFKLLNGEEVLGK..AV..LTED..D..GE.TLAFVQDPVCINLITK.EV.GEHKIV.R...GMGFSKWMQLSDEEFFILREKDILTVASMSK.EISILYD........
A0A127KMH7_9CAUD/8-89 .s-IKLRSGEEILAK..VS..YLRE..E..D-.-SLLIEKPLLVEHHFS.K-.KNGKNV.S...GFILKEWMKATYEDMFIIRMEQVITMTELDE.KIKNFY-l.......
I3ULC5_9CAUD/14-102 ..VVKLTTREEIVCK..CI..VTDE..D.dDT.SVVVISDPVVVETIKK.KV.ESEQGT.RevvAVTFNKWMQHSDSEFFILKETDVITVAPVSD.EMKNYY-t.......
A0A514ABL0_9CAUD/9-90 .t-IKLKCGDEIFCK..VA..ASDE..D..DR.TMLLISHPICVQPIKT.R-.---GSI.T...GYKFEPWLKTSHEDLFVINLEDVLTMSESEN.-------iemimnyq
A0A2S1GL21_9CAUD/14-98 ..IFKLVNGEEVCGR..AV..ITED..Q..GE.SIIFLTNPVTIEIFTK.ET.EDGRVA.R...GMGFAHWMQLSDEDFFIVREKDVISLASMSK.EYIFMYE........
A0A1D7SBD8_9CAUD/14-98 ..VIKLTNGEEILAK..AV..LTED..E..GE.TLIFVSSPVLIQNVMK.EL.PDGKVL.K...AMGFARWMQMSDEDFFILREKDIITIASMSR.EVMFMYE........
E3SIF2_9CAUD/14-98 ..IFKLVSGEEILAK..AV..LTDD..N..GE.TLCFISDPVMIQTITK.EI.DDTKVL.R...GMGFTKWMPMSDEEFYILREKDIMTIASMSS.PVVLMYE........
E3SPL5_9CAUD/8-89 .s-IKLRSGEEIVAK..VS..YLED..E..DS.L--LIEKPLLVENHHT.-K.KNGKNV.S...GFILKEWMKATYEDMFIIRMEQVITMTELDD.KIKNFY-l.......
A0A879R3P3_9CAUD/8-87 .a-IKLVTGEEIFSL..IS..VDEN..D..GD.PIIILQNPVIMKVFAN.QT.GTY---.-...-MKIKPWMEIPDDDLFLIKLDKIVTMTEIKN.QS-----tidfy...
A0A1D8KSJ5_9CAUD/1-84 ..---MITGEEILGE..VL..VSEDpdT..KQ.DLIFIQNPAKTKIVEL.DA.EEEQQR.V...AMGFIRWMNFSEEDFYVVDEKSVISIAPMSK.EAVLMY-k.......
M4QRZ0_9CAUD/8-88 ..IIKLVSGEEVLSL..VS..IDEN..D..GD.PLVVMQNPITMKLLHS.RN.GM----.-...HVKVKSWMELASDDFFIVRPDKILTMTETHD.E------rmieiyt.
A0A873WAX1_9CAUD/8-89 .s-IKLRSGEEILAK..VS..YLRE..E..D-.-SLLIEKPLLVETHN-.SK.KNGKSV.S...GFILKEWMKATYEEMFIIRMEQVITMTELDE.KIKNFY-l.......
A0A0C5AB13_9CAUD/14-97 ..VIKLTSGEELLGP..MI..ATDD..H..GD.TLIFVSNPAKPH--ST.PV.SDGKAQgL...AVGFTKWMMFSEEDFYLIREPDVICVAPMSD.DSIAMY-r.......
M4SQ50_9CAUD/14-101 .t-VKLITGEEILGE..VL..LTKDpeS..KE.DLLFIQHPAKTKIVEM.EG.PNQSDQ.K..iAVGFIKWVNFSDEEFYVLEERSVISIAPMSK.DAIRMY-k.......
A0A3G3M692_9CAUD/14-98 ..IFKLVSGEEVLGK..AV..ITDD..E..NE.TLVFIQDPVAVQVITK.EI.DEQKVA.R...GMGFAPWMQMSDEDFFIIREKDIIAVASMKK.EMIILYE........
H8ZMM1_9CAUD/14-98 ..IFKLVNGEDVLGK..SL..ITED..N..GE.SIVFIQDPVTLEIFTK.DL.DDGKVA.R...GMGFAKWMQMSDEEFFMQREKDIISLATMSK.ETIFLYE........
A0A4Y5P0P8_9CAUD/9-90 .t-IKLKCGDEIFCK..VA..ASDE..D..DR.TMLLISHPICVQPIKT.R-.---GSI.T...GYKFEPWLKTSHEDLFVINLEDVLTMSESEN.-------iemimnyq
E3SK32_9CAUD/14-100 si--RMKYGAEILAV..AM..VSHD..EdtNT.DVVYVQNPVEVNVMIH.ER.PDGKSV.R...GMGFSKWCAFSNEEFYIINGNDILTMSALSN.EIIILYE........
#=GC seq_cons ...hKLhsGEElLuK..ul..lT-D..c..s-.ollalpsPlhlphlp+.-h.pps+sl.+...GhGFs+WMphS-EDFFIl+ccDIlTlushS+.-hhhhYp........
//
