#=GF ID   Tospo_nucleocap
#=GF AC   PF01533.20
#=GF DE   Tospovirus nucleocapsid protein
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_950 (release 4.0)
#=GF GA   24.10 24.10;
#=GF TC   24.60 31.00;
#=GF NC   20.00 24.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -E 1000 -Z 75585367 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   8429298
#=GF RT   Classification of tospoviruses based on phylogeny of
#=GF RT   nucleoprotein gene sequences. 
#=GF RA   de Avila AC, de Haan P, Kormelink R, Resende R, Goldbach RW,
#=GF RA   Peters D; 
#=GF RL   J Gen Virol 1993;74:153-159.
#=GF DR   INTERPRO; IPR002517;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   The tospovirus genome consists of three linear ssRNA segments,
#=GF CC   denoted L, M and S complexed with the nucleocapsid protein. The
#=GF CC   S RNA encodes the nucleocapsid protein and another
#=GF CC   non-structural protein [1].
#=GF SQ   9
#=GS Q89266_WASMV/1-250  AC Q89266.1
#=GS NCAP_TSWV1/1-246    AC P25999.1
#=GS I3PCS9_9VIRU/3-247  AC I3PCS9.1
#=GS A4GW61_9VIRU/1-250  AC A4GW61.1
#=GS Q9YUD5_9VIRU/1-206  AC Q9YUD5.1
#=GS Q84403_9VIRU/1-250  AC Q84403.1
#=GS Q5G1B2_9VIRU/1-251  AC Q5G1B2.1
#=GS F5B5Y0_9VIRU/1-246  AC F5B5Y0.1
#=GS A9QW69_9VIRU/1-246  AC A9QW69.1
Q89266_WASMV/1-250             ....MSNVKqLTEKKIKELLAGGtA.DVEIETEDSTPGFSFKAFFYNNKN-I-EITFTNCLNILKCRKQIFAAC.KSGKYN.F.CG.KNIVATSVDVGPEDWTFKRTEAFIRTKI...VsmvEKS.....KNE..AAR...QE.MYGKIMELPLVAAYGLNVpasY...DS...CALRMMLCIGGPLPLLSSIRGLAPIIFPLAYYQNIKKEKLGI--KNFSTYEQVCKVAKVLSASQVEFKDDLDVMFKQAVKILSESNPGTASSISLKKYEDQVK------ymdrvf......
NCAP_TSWV1/1-246               ....MSKVK.LTKESIVALLTQG.K.DLEFEEDQNLVAFNFKTFCLENIDQIKKMSVISCLTFLKNRQSIMKVI.KQSDFT.F.GK.ITIKKTSDRIGGTDMTFRRLDSLIRVRL...V...EET.....GNS..ENL...NT.IKSKIASHPLIQAYGLPL...D...DA...KSVRLAIMLGGSLPLIASVDSFEMISVVLAIYQDAKYKDLGIDPKKYDTKEALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSSNPNAKGSVAMEHYSETLNKFYEMF............
I3PCS9_9VIRU/3-247             .sna---LK.LNAENLKKLLLFN.D.EVEFE--QQSTGFKFVDFCKA--HEKDKFNPTSALTFLKNRKAIYSLC.KASTFN.Y.GV.YEIKK-GDKATDTDFTFKRLDAFLRVKL...L...THCtkiwdGTD..PNA...QTaLCSELAKIPIVKAYGLEV...S...DK...QKCYIAIVLGGNLSLLASLPGCEVACFALAIFQDLKKNELGIKS-DFDTKDQAGRVAAVLDAKNFVFGEPENEKLKKIAGILKEMTPTRRGHAALTKYAEQLS------iisgv.......
A4GW61_9VIRU/1-250             ....MSTTG.LSKENVEKLLAGG.DaDVEIEAE-ETAGFNFKQFVTDNSK--MKMTFNNGFTILRNRAAIYKMV.KAGHFK.FqGKsIVVPSSTSSPGQDDWTFRRLEGFIRAKM...F...MEL.....INM..ENAveqQK.MYEKLCELPMVNAYGLKP...SskfDP...TTARVVLTLGGPLPLMASLDKFAAAAFPLAYFQNVKKEALGIN--KFSTYEQLCKIARVMATKEFTFTGASKAIFEETIKILNDCTPGTAGAASLNKFNEQIKA-----leavf.......
Q9YUD5_9VIRU/1-206             mskt--KVK.NDKELFES-LSRN.A.--KIELSQEQANFTFKKFFSENNSKVE-ISDENMILFINNSNK-MKAIgRESSVSkY.LG.HSIVKSSP--GVNEFTWSRMDSLIRMKY...I...ERV.....KDYgdDRM...KA.ENAKLT-NWLLEVFNLHT...D...AMsprDEVIFKVVTGGNLNHLMGFKTTFAHAFAIANYQHKRSEELGI--KNFDTKAQLDRMVV---------------------------------------------------igercsllpspt
Q84403_9VIRU/1-250             ....MSNVKqLTEKKIKELLAGGsA.DVEIETEDSTPGFSFKAFYDTNKN--LEITFTNCLNILKCRKQIFAAC.KSGKYV.F.CG.KTIVATNTDVGPDDWTFKRTEAFIRTKMasmV...EKS.....KND..AAK...QE.MYNKIMELPLVAAYGLNV...PasfDT...CALRMMLCIGGPLPLLSSMTGLAPIIFPLAYYQNVKKEKLGI--KNFSTYEQVCKVAKVLSASQIEFKNELEEMFKSAVKLLSESNPGTASSISLKKYDEQVK------ymdkaf......
Q5G1B2_9VIRU/1-251             ....MSNVRgLTQQKIKDLLAGG.KaDVEIDSEEQTLGFNFSTFYESNK-TGAEFTFTTGINILKCRKQVFAAC.KSGKYE.F.CG.KKVVATTDEVSATDWTFKRTEAFIRAKLismV...EHT.....TDE..ATK...KL.MYTKAMELPLVVAYGLNV...PaefHY...AALRLMLCIGGPLPLLSSLPGLAPVCFPLAYFQNVKKEQLGI--KNFSTYEQICKVAKVLSAASVEFADKTKELFDSTVKLLGDSSPGTAGAISLHKYNSQLKQM----eaaf........
F5B5Y0_9VIRU/1-246             ....MSKVK.LTKENIVSLLTQS.E.DVEFEEDQNQVAFNFKTFCQENLDLIKKMSITSCLTFLKNRQSIMKVV.NQSDFT.F.GK.VTIKKNSERVGAKDMTFRRLDSMIRVKL...I...EET.....ANN..ENL...AI.IKAKIASHPLVQAYGLPL...A...DA...KSVRLAIMLGGSIPLIASVDSFEMISVVLAIYQDAKYKELGIEPTKYNTKEALGKVCTVLKSKGFTMDDAQINKGKEYAKILSSCNPNAKGSIAMDYYSDNLDKFYEMF............
A9QW69_9VIRU/1-246             ....MSKVK.LTKDNIIKLLSSN.A.EIEFEEEQNQSTFQFDTFFDANVEKLKNMTVMSCLTFLKNRQSIMKVV.KQADFT.F.NG.ITIKKSKPKIEPKDMTFRRLDAMIRAKM...I...EFT.....AKD..EAL...EI.IKVKISSHPLVMAYSLDV...N...DA...KSARIACLLGGSLPLLASIPHYEAICLVLAVYQDAKSQELGIDQKKYDTKEAIGKVCTVLKSKGYVMDNDQLEKAKMYAQILSKCDPKLKGDMAMNHYEAGLKQIYEIF............
#=GC seq_cons                  ....MSpVK.LTc-pIccLLutu.s.DVEhEp-pppsuFsFKsFhpsNhp.htchohsssLshLKNRppIhpss.Kpucas.F.ss.hsIhpoosclGssDaTF+Rh-uhIRsKh...l...Eco.....tsp..tsh...pt.hhsKlsphPLVtAYGLsl...s...Ds...pulRlhlslGGsLPLLuSlsuhtslsFsLAhYQssKpccLGI..KpFsThEQlsKVspVLpupthphsssp.phhKphspILucssPsstGuhuhp+Ys-plc........th........
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