#=GF ID   TraD_N
#=GF AC   PF12615.12
#=GF DE   F sex factor protein N terminal
#=GF AU   Gavin OL;
#=GF SE   Prosite
#=GF GA   25.00 25.00;
#=GF TC   25.40 27.50;
#=GF NC   24.70 24.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   2680768
#=GF RT   Nucleotide sequence of the traD region in the Escherichia coli F
#=GF RT   sex factor.
#=GF RA   Jalajakumari MB, Manning PA;
#=GF RL   Gene. 1989;81:195-202.
#=GF DR   INTERPRO; IPR022585;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This domain family is found in bacteria, and is typically
#=GF CC   between 96 and 107 amino acids in length. The family is found in
#=GF CC   association with Pfam:PF10412. TraD is a cytoplasmic membrane
#=GF CC   protein with possible DNA binding domains. It is part of the
#=GF CC   bacterial F sex factor complex.
#=GF SQ   40
#=GS A0A0F3QKP4_RICAM/28-136   AC A0A0F3QKP4.1
#=GS A0A1Y3ASG8_EURMA/141-239  AC A0A1Y3ASG8.1
#=GS A0A0F3MPM7_9RICK/29-109   AC A0A0F3MPM7.1
#=GS Q93GL8_SALTY/32-128       AC Q93GL8.1
#=GS Q6LW78_PHOPR/35-128       AC Q6LW78.1
#=GS A0A378BVW9_KLEPR/32-128   AC A0A378BVW9.1
#=GS A0A0F3MKF7_9RICK/29-120   AC A0A0F3MKF7.1
#=GS A0A378JR59_9GAMM/34-126   AC A0A378JR59.1
#=GS A0A0F3MIU4_9RICK/29-136   AC A0A0F3MIU4.1
#=GS A0A378P2U8_9GAMM/34-126   AC A0A378P2U8.1
#=GS A0A859RTI1_9ENTR/32-128   AC A0A859RTI1.1
#=GS W1DNB1_KLEPN/12-108       AC W1DNB1.1
#=GS A0A859QYE8_9ENTR/32-128   AC A0A859QYE8.1
#=GS W1EBN3_KLEPN/32-128       AC W1EBN3.1
#=GS D4EA28_SEROD/32-130       AC D4EA28.1
#=GS A0A653CIP1_CALMS/32-128   AC A0A653CIP1.1
#=GS A0A0H3GZJ9_KLEPH/32-128   AC A0A0H3GZJ9.1
#=GS A0A859PWR9_9ENTR/32-128   AC A0A859PWR9.1
#=GS A6TIJ1_KLEP7/32-128       AC A6TIJ1.1
#=GS A0A078KYH4_9GAMM/34-126   AC A0A078KYH4.1
#=GS W0BF53_9GAMM/34-126       AC W0BF53.1
#=GS D2U4N8_9GAMM/32-129       AC D2U4N8.1
#=GS A0A0M2K3W1_9GAMM/32-128   AC A0A0M2K3W1.1
#=GS A0A2A2GQD2_9GAMM/32-129   AC A0A2A2GQD2.1
#=GS A0A4R6E198_9ENTR/31-128   AC A0A4R6E198.1
#=GS A0A2U8I570_9GAMM/28-121   AC A0A2U8I570.1
#=GS G2H1R5_9ENTR/32-130       AC G2H1R5.1
#=GS A0A653CJ95_CALMS/1-60     AC A0A653CJ95.1
#=GS A0A0F3MJM2_9RICK/29-78    AC A0A0F3MJM2.1
#=GS A0A1E7YYN0_9GAMM/32-128   AC A0A1E7YYN0.1
#=GS A0A2V1HBW5_9GAMM/29-128   AC A0A2V1HBW5.1
#=GS A5CC23_ORITB/30-137       AC A5CC23.1
#=GS A0A3S1D2T5_9GAMM/12-104   AC A0A3S1D2T5.1
#=GS A0A377YVY0_KLEPO/32-128   AC A0A377YVY0.1
#=GS J2DEY8_KLEPN/32-128       AC J2DEY8.1
#=GS A0A085FZ03_9ENTR/32-136   AC A0A085FZ03.1
#=GS A0A1I5BAE3_9GAMM/32-128   AC A0A1I5BAE3.1
#=GS A0A5Q2KCU2_9ENTR/32-137   AC A0A5Q2KCU2.1
#=GS A0A0F3QEK4_RICAM/28-136   AC A0A0F3QEK4.1
#=GS A0A0J8Y9G8_9ENTR/32-136   AC A0A0J8Y9G8.1
A0A0F3QKP4_RICAM/28-136              ....na--LTIGLIF.TVVWLMWRIYQKLSLVSLYYFIIERYAG...L.KLAI..GE-..HFYPT----......NQIGIKFYYLEQKAWVYRNAEEFVhkfwhitphshninqfgQFLLHSAWQEGIITFTAF-m......................
A0A1Y3ASG8_EURMA/141-239             ......CLFIAFFLV.AVSVMMWRVSMQNLTNGMIYWWVRMLES...W.PSVA..PSE..SVYHLDYYG......RELVYTGKQVLVDRYVVYCGQLVW.................REALFASGVALAACVV---ggiva..................
A0A0F3MPM7_9RICK/29-109              .....n-VLTIGFGL.SIFWILWRLYQKLFLSSLYYFAIERYVQ...L.KLAI..GE-..HFYDI----......DEIGIKFYSLMLKKWTYLNAQDFV.................YKFY---------------rttw...................
Q93GL8_SALTY/32-128                  ......CLFIFFWIL.VGLVLWVKLSWQTFVNGGIYWWCTTLEG...M.RDLI..KSQ..PVYEIRYYG......QTFRMNAAQVLQDKYTVWCGEQLW.................SAFVLAACVALVICLITFF.......................
Q6LW78_PHOPR/35-128                  ......WMGYGILLL.TALLCFSFIDQDTLKGTYYYWRYSMVGK...I.KPDT..HE-..-VFTL-WQG......VTYKSTLGQQRLNPVFIDANRQFW.................LSLQLYLLASLISGLTVFS.......................
A0A378BVW9_KLEPR/32-128              ......VLFILFWVL.CGLMLMYRLSWQTFVNGCVYWWCTTLGP...M.RDII..RSQ..PVYTIQYYG......QSLEYTSEQILADKYTIWCGEQLW.................TSFVFAAVVSLVICIVTFF.......................
A0A0F3MKF7_9RICK/29-120              .....n-VLTIGFGL.SIFWILWRLYQKLFLSSLYYFAIERYVQ...L.KLAI..GE-..HFYDI----......DEIGIKFYSLMLKKWIYLNAQDFV.................YKFYRTTWIENIQIMAIF-n......................
A0A378JR59_9GAMM/34-126              .....i-CLFLWIIF.TAFLTWLFIPLEKITHTAAF----YYAH...F.LRVV..GQN..HIFELSFHG......KTYKQTVDSILHYPYYQDTANQVI.................NSLGKSAFWAFCFSFILGL.......................
A0A0F3MIU4_9RICK/29-136              .....n-VLTIGFGL.SIFWILWRLYQKLFLSSLYYFAIERYVQ...L.KLAI..GE-..HFYDI----......DEIGIKFYSLMLKKWTYLNAQDFVykfyigqh.glriyklwQFLINSALLEGLVVFTIG-a......................
A0A378P2U8_9GAMM/34-126              .....v-YLFIWAGL.SIVLTCIFAPHGMIRQTVSY----HAAH...F.YHLA..GVP..HVFSIPVKG......GYASQTVEQLLHNHYFSATSDRLL.................TLLLQSTLWSFPLSLIVA-l......................
A0A859RTI1_9ENTR/32-128              ......VLFILFWVL.CGLMLMYRLSWQTFVNGCVYWWCTTLAP...M.RDII..RSQ..PVYTISYYG......KSLEYNAEQILADKYTIWCGEQLW.................TAFVFAAIVSLTVCVVTFF.......................
W1DNB1_KLEPN/12-108                  ......VLFILFWVL.CGLMLMYRLSWQTFVNGCVYWWCTTLGP...M.RDII..RSQ..PVYTIQYYG......QSLEYTSEQILADKYTIWCGEQLW.................TGFVFAAVVSLVICIVTFF.......................
A0A859QYE8_9ENTR/32-128              ......VLFIIFWVL.CGLMLMYRLSWQTFVNGCVYWWCTTLAP...M.RDII..RSQ..PVYTINYYG......KSLEYNSEQILADKYTIWCGEQLW.................TSFVFAAIVSLTVCIVTFF.......................
W1EBN3_KLEPN/32-128                  ......VLFILFWVL.CGLMLMYRLSWQTFVNGCVYWWCTTLGP...M.RDII..RSQ..PVYTIQYYG......QSLEYTSEQILADKYTIWCGEQLW.................TSFVFAAVVSLVICIVTFF.......................
D4EA28_SEROD/32-130                  ......CLFIAFFLV.AVSVMMWRVSMQNLTNGMIYWWVRMLES...W.PSVA..PSE..SVYHLDYYG......RELVYTGKQVLVDRYVVYCGQLVW.................REALFASGVALAACVV---ggiva..................
A0A653CIP1_CALMS/32-128              ......CLVILFGII.VAITLSVKLTWQTFVNGMVYYWCQTLAP...M.RDIF..KSQ..PVYTIRYYG......HELKYNAQQILQDKYIQWCADQVW.................TAFILASIIAAVVCVITFF.......................
A0A0H3GZJ9_KLEPH/32-128              ......VLFILFWVL.CGLMLMYRLSWQTFVNGCVYWWCTTLGP...M.RDII..RSQ..PVYTIQYYG......QSLEYTSEQILADKYTIWCGEQLW.................TSFVFAAVVSLVICIVTFF.......................
A0A859PWR9_9ENTR/32-128              .....y-MIMSFMIM.TVATLFIRMSTQNIMNGLMYWYASTIAP...F.QKRM..VNP..TLYHLDYYG......KKLHYTAVQIVNDAYTSYCGLLLK.................QELIISALISMVVVF----lgal...................
A6TIJ1_KLEP7/32-128                  ......VLFILFWVL.CGLMLMYRLSWQTFVNGCVYWWCTTLGP...M.RDII..RSQ..PVYTIQYYG......QSLEYTSEQILADKYTIWCGEQLW.................TGFAFAAVVSLVICIVTFF.......................
A0A078KYH4_9GAMM/34-126              .....l-CLFLWLVF.TGIITWWVTSYEQIQQAIAY----YYAC...F.LHLV..GQK..QSFTLPFHG......QNYRQTVESLLHYSYFKSNANHMV.................ELLGKSALAGFALALFLG-l......................
W0BF53_9GAMM/34-126                  ......VCLFLWVVL.TGLITWLVTSPEKFYQAIAY----YYAS...F.LNLV..GQK..HTFTLHFHG......KNYQQNVDVILHYPYYKENATHMV.................DLLGKSSLAAFVLSFVLGL.......................
D2U4N8_9GAMM/32-129                  ......CLFISFWII.AALSMTIQLTWQTFVNGMVYWWCKTLVP...M.YSLF..RSE..PVYHLDYYG......QKLHYTPSQILMDRYTVYCGEKVL.................NTFIISGIIAIVVCVV---glfv...................
A0A0M2K3W1_9GAMM/32-128              .....y-VFIGWLAL.LGFILYLRLNTQTFLNGLVYWWSHTLIP...F.GSII..RKP..PVYPVRYYG......NILYYTYDKILTDKYTVWCGITLR.................NEIILSGLFASIITFTV--vm.....................
A0A2A2GQD2_9GAMM/32-129              ......CLFVSFWII.AALSMTVQLTWQTFVNGMVYWWCKTLVP...M.YSLF..RSE..PVYHLDYYG......QKLHYTPSQILMDRYTVYCGEKVL.................NTFIISGIIAIIVCVV---glfv...................
A0A4R6E198_9ENTR/31-128              ...fyi---IMFWIAsSIGILFMRVSVQNMMNGIIYWYVKAAWP...F.MKKM..HHQ..AVLHINYKD......ARLDYSPWQILHDAYTTWCGQTLK.................QELVISFTGSLILVFFL--tl.....................
A0A2U8I570_9GAMM/28-121              iifyyi--IMSFMVM.TIVNLFIRVSTQNIIDGLIYWYSWSVNP...L.LKNS..VNP..TCYTLNYYG......KKLNFTTDQIIND-----------.................-------------------ahdgvfsgntnagnhffflflfr
G2H1R5_9ENTR/32-130                  .....y-MIMSFMVI.TLVTLFIRVSTQNSINGLMYWYAWSINP...LlKNSV..NP-..TRYTLNYYG......KKLSYTTDQIINDAYTSYCGQLLK.................QELIISALISMIVVFL---aalff..................
A0A653CJ95_CALMS/1-60                ......---------.----------------------------...M.RDIF..KSQ..PVYTIRYYG......HELKYNAQQILQDKYIQWCADQVW.................TAFILAAIIAAVVCVITFF.......................
A0A0F3MJM2_9RICK/29-78               ......NVLTIGFGL.SIFWILWRLYQKLFLSSLYYFAIERYVQ...L.KLAI..GE-..HFYDI----......------------------------.................-------------------d......................
A0A1E7YYN0_9GAMM/32-128              ......CLVILFGVI.VALTLTVKLSWQTFVNGMVWYWCQTLAP...M.RDIF..RSQ..PVYTIRYYG......HELKYNAQQILQDKYIQWCADQVW.................TAFILAAIIAAVVCVITFF.......................
A0A2V1HBW5_9GAMM/29-128              ...vfyCVFLLFGVV.IVVTLLMRLSWQNFENGLIYWWCYLVEG...F.PTVS..PAQ..SIYHLNYYG......KTLRYTGQQILVDEYTTYCGELVR.................REFIFAAILGVVVCVIT--ag.....................
A5CC23_ORITB/30-137                  ......NVFTIGLGL.SIFWIICRLYQKVFLSSLYYFAIERYVQ...L.KLTI..GE-..HFYDI----......DQIGIVFYSLRFKKWIHLNAQDFLhefytgqh.gfkiqqlwEFLINSALLEGLIVFAIGV.......................
A0A3S1D2T5_9GAMM/12-104              .....i-CLFLWLVF.TGVIAFWVTSYEQLHQAIAY----YYAL...F.LNLV..GQK..HTFTVPFHG......KEYRQSVESILHYSYFKSNADHTV.................TLLGRSALAGFFIAFFLG-i......................
A0A377YVY0_KLEPO/32-128              ......CLFIFFWIL.VGLILWVKISWQTFVNGCIYWWCTTLEG...M.RDLI..KSQ..PVYEIQYYG......KTFQMNAAQVLHDKYMIWCGEQLW.................SAFVLASVVALVICLITFF.......................
J2DEY8_KLEPN/32-128                  ......CLFIFFWIL.VGLILWVKISWQTFVNGCIYWWCTTLEG...M.RDLI..KSQ..PVYEIQYYG......KTFRMNAAQVLHDKYMIWCGEQLW.................SAFVLASVVALVICLITFF.......................
A0A085FZ03_9ENTR/32-136              ......WIFILFAVL.ASAIFLWRIPQETLDNGSLWWFAWMNSS...F.FELM..PASapKLYDIHYWYaptqtvMVLKMTVVQIFTDPYMTAMGEQFL.................DYLQWAGLGSGVFSLAVFM.......................
A0A1I5BAE3_9GAMM/32-128              .....y-VFLGWLGL.LSFIVYIRLNTQTFLNGLVYWWSHTLIP...F.GSII..RKP..PVYPVRYYG......NTLYYTYDKILTDKYTAWCGITLR.................NELILSGLFASIITFIV--vi.....................
A0A5Q2KCU2_9ENTR/32-137              ......WIFILFALL.TTAIFLWRIPQEALDNGSLWWFASINSSfidL.MPAT..GTP..KIYDVHYWYaptatmMVLKMTLPQIYADPYMQAMGDQCL.................RELQWAAGASGLFSMVVFF.......................
A0A0F3QEK4_RICAM/28-136              ....na--LTIGLIF.TVVWLMWRIYQKLSLVSLYYFIIERYAG...L.KLAI..GE-..HFYPT----......NQIGIKFYYLEQKAWVYRNAEEFVhkfwhitphshninqfgQFLLHSAWQEGIITFTAF-m......................
A0A0J8Y9G8_9ENTR/32-136              ......WILILFIGL.GAIIFLLKTPQELLENGAWYWFANLNAT...F.ADLIpaGKG..KFYDIHYFYapanstLTLKMTLQQMLTDPYMQVMGERFA.................TNLEVAAIASGAFSLCVFF.......................
#=GC seq_cons                        .......lhhlFhll.sslhlhhRlohpshlNGhhYWaspphss...h.tsll..tsp..slYslpYaG......ppLchospQILtD+Yhhhsucplh.................pthlhuulhuhllshlhh........................
//