#=GF ID   Trp_leader2
#=GF AC   PF08056.15
#=GF DE   Tryptophan operon leader peptide
#=GF AU   Lee SC;0000-0002-0504-0859
#=GF SE   Short protein clustering
#=GF GA   27.00 27.00;
#=GF TC   27.90 27.60;
#=GF NC   24.80 24.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -E 1000 -Z 75585367 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   12213655
#=GF RT   Transcription attenuation. 
#=GF RA   Gollnick P, Babitzke P; 
#=GF RL   Biochim Biophys Acta 2002;1577:240-250.
#=GF DR   INTERPRO; IPR012639;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of the tryptophan operon  leader peptides.
#=GF CC   The tryptophan operon is regulated  by transcription attenuation
#=GF CC   in response to changes  in the level of tryptophan. The
#=GF CC   transcript of the  leader peptide can adopt alternative
#=GF CC   mutually-exclusive  secondary structures that would either
#=GF CC   result in  termination of transcription of the tryptophan
#=GF CC   structural  genes or in transcription of the entire operon [1].
#=GF SQ   12
#=GS A7MRZ4_VIBC1/1-41       AC A7MRZ4.1
#=GS A0A090P3V1_9VIBR/1-41   AC A0A090P3V1.1
#=GS LPW_VIBPA/1-41          AC P22100.2
#=GS A0A3R9L1B0_9VIBR/1-41   AC A0A3R9L1B0.1
#=GS F9RF81_VIBSN/1-41       AC F9RF81.1
#=GS Q9KST0_VIBCH/10-45      AC Q9KST0.1
#=GS A0A0F4FJB5_VIBCL/10-45  AC A0A0F4FJB5.1
#=GS A0A0M0HNH0_VIBNE/1-41   AC A0A0M0HNH0.1
#=GS A0A090RJ00_9VIBR/1-39   AC A0A090RJ00.1
#=GS A0A7X4RUV6_9VIBR/1-36   AC A0A7X4RUV6.1
#=GS Q7MM51_VIBVY/1-41       AC Q7MM51.1
#=GS A0A0F4NPP7_9VIBR/1-41   AC A0A0F4NPP7.1
A7MRZ4_VIBC1/1-41                  MLQEFNQNQKAKVALRLNKMNSADLAWWRTWTSSWWANVYF.....
A0A090P3V1_9VIBR/1-41              MLQEFNQKQKTKVALTSPEREMSELAWWRTWTSSWWANVYF.....
LPW_VIBPA/1-41                     MLQEFNQNQKAKVAVCLNKTNSTDLAWWRTWTSSWWANVYF.....
A0A3R9L1B0_9VIBR/1-41              MLQEFNSNQKANLAVNGQYAVSENIACWRTWTSSRWADRYF.....
F9RF81_VIBSN/1-41                  MLQEFNQKQKTKVTLHSPKREQVELSWWRTWNSSWWASVYF.....
Q9KST0_VIBCH/10-45                 MLQEFNPNHKPNFS-----PADAELAWWRTWTSSWWAHVYF.....
A0A0F4FJB5_VIBCL/10-45             MLQEFNPNHKPNFS-----PADAELAWWRTWTSSWWAHVYF.....
A0A0M0HNH0_VIBNE/1-41              MLQEINHNQKAKVAVCSMSTTASDLSWWRTWTSSWWANVYF.....
A0A090RJ00_9VIBR/1-39              MLQEINQKQSIKVITTASQAAMVAGSWWRSWTLS-------sglnc
A0A7X4RUV6_9VIBR/1-36              MLQEFNLNHKP-----LNESVRKELAWWRTWSMTWWADV--cl...
Q7MM51_VIBVY/1-41                  MLQEFNHNQKAKLALHNENVNAAELAWWRTWTSSWWANVYF.....
A0A0F4NPP7_9VIBR/1-41              MLQDINQNHKAKVVGGDSNYRSADLAWWRTWTSSWWANVYF.....
#=GC seq_cons                      MLQEFNpNQKsKluhp..pssss-LAWWRTWTSSWWAsVYF.....
//