#=GF ID   VLPT
#=GF AC   PF07122.15
#=GF DE   Variable length PCR target protein (VLPT)
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_15500 (release 10.0)
#=GF GA   27.00 27.00;
#=GF TC   28.30 63.50;
#=GF NC   24.10 17.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF RN   [1]
#=GF RM   12496165
#=GF RT   Molecular heterogeneity of Ehrlichia chaffeensis isolates
#=GF RT   determined by sequence analysis of the 28-kilodalton outer
#=GF RT   membrane protein genes and other regions of the genome. 
#=GF RA   Cheng C, Paddock CD, Reddy Ganta R; 
#=GF RL   Infect Immun 2003;71:187-195.
#=GF DR   INTERPRO; IPR009805;
#=GF DR   SO; 0001068; polypeptide_repeat;
#=GF CC   This family consists of a number of 29 residue repeats which
#=GF CC   seem to be specific to the Ehrlichia chaffeensis variable length
#=GF CC   PCR target (VLPT) protein. Ehrlichia chaffeensis is a
#=GF CC   tick-transmitted rickettsial agent and is responsible for human
#=GF CC   monocytic ehrlichiosis (HME). The function of this family is
#=GF CC   unknown [1]. 
#=GF SQ   3
#=GS Q2GHT8_EHRCR/41-70    AC Q2GHT8.1
#=GS Q2GHT8_EHRCR/71-100   AC Q2GHT8.1
#=GS Q2GHT8_EHRCR/101-130  AC Q2GHT8.1
Q2GHT8_EHRCR/41-70               DLQQSSNSDLHGSFSVELFDPFKEAVQLGN.
Q2GHT8_EHRCR/71-100              DLQQSSDSDLHGSFSVELFDPSKEEVQLE-s
Q2GHT8_EHRCR/101-130             DLQQSSNSDLHESSFVELPGPSKEEVQFED.
#=GC seq_cons                    DLQQSSNSDLHGSFSVELFDPSKEEVQLEs.
//