#=GF ID   VP9
#=GF AC   PF09625.14
#=GF DE   VP9 protein
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   pdb_2gj2
#=GF GA   27.00 27.00;
#=GF TC   27.60 27.00;
#=GF NC   25.60 18.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   16956937
#=GF RT   Identification of a novel nonstructural protein, VP9, from white
#=GF RT   spot syndrome virus: its structure reveals a ferredoxin fold
#=GF RT   with specific metal binding sites. 
#=GF RA   Liu Y, Wu J, Song J, Sivaraman J, Hew CL; 
#=GF RL   J Virol. 2006;80:10419-10427.
#=GF DR   INTERPRO; IPR018587;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   VP9 is a protein containing a ferredoxin fold. Two dimers come
#=GF CC   together to form one asymmetric unit which possesses a DNA
#=GF CC   recognition fold and specific metal binding sites possibly for
#=GF CC   zinc. It is postulated that being a non-structural protein VP9
#=GF CC   is involved in the transcriptional regulation of the White spot
#=GF CC   syndrome virus, WSSV, from which it comes. WSSV is the major
#=GF CC   viral pathogen in shrimp aquaculture [1]. VP9 is found
#=GF CC   N-terminal to the Pfam:PF07056 domain.
#=GF SQ   13
#=GS A0A0A0Y8Z9_WSSVS/27-110  AC A0A0A0Y8Z9.1
#=GS Q8VAY4_WSSVS/22-101      AC Q8VAY4.1
#=GS Q77FL4_WSSV/1-75         AC Q77FL4.1
#=GS A0A2U9G8Y1_WSSV/22-98    AC A0A2U9G8Y1.1
#=GS Q77EZ6_WSSV/22-101       AC Q77EZ6.1
#=GS A0A2U9GGS5_WSSV/4-80     AC A0A2U9GGS5.1
#=GS Q8VAE6_WSSVS/1-75        AC Q8VAE6.1
#=GS Q77J47_WSSVS/22-98       AC Q77J47.1
#=GS Q8VAC8_WSSVS/28-106      AC Q8VAC8.1
#=GS A0A2U9GA14_WSSV/27-110   AC A0A2U9GA14.1
#=GS Q8QTG6_WSSV/7-85         AC Q8QTG6.1
#=GS Q77IY9_WSSVS/7-85        AC Q77IY9.1
#=GS Q77J48_WSSVS/4-80        AC Q77J48.1
A0A0A0Y8Z9_WSSVS/27-110             lsf---SEGFSLSGDK.YDTYEDILLeqfnCFKTSspSSARKSEIEDKTLIFQLKEGE.KFHLAKGIEELREILDDNSATIEPIIS----ptt.....
Q8VAY4_WSSVS/22-101                 ...LQLRSSFLMIGEKqYEKYEEVMS....TFEAV..ETIRKSEFRDGVFIVQLKENK.HITFEGGLKELRELTGDNSLKIESLLSSIKP........
Q77FL4_WSSV/1-75                    mas-----GFAIKGI-.VKNYRRIPS....IIESI..KSIRRSELAEGVYIVSLHKNTpKHEVDEIVNKIRLSAGNPCLE----------ktslflqh
A0A2U9G8Y1_WSSV/22-98               ...LKLRSSFLMIGKK.TSKYEQVMG....VYEAI..ESIRQSELSEDTFVVHVKKDK.QLKFARGLKRLQELVEDDSLRIERI--SCAP........
Q77EZ6_WSSV/22-101                  ...LQLRSSFLMIGEKqYEKYEEVMS....TFEAV..ETIRKSEFRDGVFIVQLKENK.HITFEGGLKELRELTGDNSLKIESLLSSIKP........
A0A2U9GGS5_WSSV/4-80                ...FQTDADFLLVGDD.TSRYEEVMK....TFDTV..EAVRKSDLDDRVYMVCLKQGS.TFVLNGGIEELRLLTGDSTLEIQPM---I--vpt.....
Q8VAE6_WSSVS/1-75                   mas-----GFAIKGI-.VKNYRRIPS....IIESI..KSIRRSELAEGVYIVSLHKNTpKHEVDEIVNKIRLSAGNPCLE----------ktslflqh
Q77J47_WSSVS/22-98                  ...LKLRSSFLMIGKK.TSKYEQVMG....VYEAI..ESIRQSELSEDTFVVHVKKDK.QLKFARGLKRLQELVEDDSLRIERI--SCAP........
Q8VAC8_WSSVS/28-106                 ...LKVKNGFTISGEN.PDKYEHILL....SFKSV..DRVTKSELRDGLYIVRLKDKE.VLHIKNGVHRLRQLTGDNTLQVGLKYTHNLP........
A0A2U9GA14_WSSV/27-110              lsf---SEGFSLSGDK.YDTYEDILLeqfnCFKTSspSSARKSEIEDKTLIFQLKEGE.KFHLAKGIEELREILDDNSATIEPIIS----ptt.....
Q8QTG6_WSSV/7-85                    ...LKVKNGICLSGEN.TENYERVLL....TFKSV..KSVRRSELKEGHFIVRLRDKE.VLHIKNGNERLRQLTGDPTLQIGLKYTSSLP........
Q77IY9_WSSVS/7-85                   ...LKVKNGICLSGEN.TENYERVLL....TFKSV..KSVRRSELKEGHFIVRLRDKE.VLHIKNGNERLRQLTGDPTLQIGLKYTSSLP........
Q77J48_WSSVS/4-80                   ...FQTDADFLLVGDD.TSRYEEVMK....TFDTV..EAVRKSDLDDRVYMVCLKQGS.TFVLNGGIEELRLLTGDSTLEIQPM---I--vpt.....
#=GC seq_cons                       ...hphcsuFhlhG-c.scpYEcVht....sF-ol..cSlR+SELc-ssaIVpLKcsc.phclspGlccLRpLsGDsoLcIp.h..............
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