#=GF ID Viral_DNA_bi
#=GF AC PF02236.21
#=GF DE Viral DNA-binding protein, all alpha domain
#=GF PI Vir_DNA_binding;
#=GF AU Bateman A;0000-0002-6982-4660
#=GF AU Mian N;0000-0003-4284-4749
#=GF AU Griffiths-Jones SR;0000-0001-6043-807X
#=GF SE Pfam-B_1651 (release 5.2)
#=GF GA 23.50 23.50;
#=GF TC 23.60 28.20;
#=GF NC 23.20 21.00;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP Domain
#=GF RN [1]
#=GF RM 8039495
#=GF RT Crystal structure of the adenovirus DNA binding protein reveals
#=GF RT a hook-on model for cooperative DNA binding.
#=GF RA Tucker PA, Tsernoglou D, Tucker AD, Coenjaerts FE, Leenders H,
#=GF RA van der Vliet PC;
#=GF RL EMBO J 1994;13:2994-3002.
#=GF DR INTERPRO; IPR003176;
#=GF DR SCOP; 1adu; fa;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC This family represents a domain of the viral DNA- binding
#=GF CC protein, a multi functional protein involved in DNA replication
#=GF CC and transcription control.
#=GF SQ 64
#=GS A0A1B1SKZ2_9ADEN/141-219 AC A0A1B1SKZ2.1
#=GS U5NHK2_9ADEN/223-301 AC U5NHK2.1
#=GS E9KLA8_9ADEN/113-191 AC E9KLA8.1
#=GS H9AAQ2_9ADEN/143-221 AC H9AAQ2.1
#=GS B2VQF8_9ADEN/142-220 AC B2VQF8.1
#=GS Q9YUQ9_9ADEN/8-73 AC Q9YUQ9.1
#=GS A0A5F2P0N0_9ADEN/161-239 AC A0A5F2P0N0.1
#=GS A0A076FTB4_9ADEN/19-95 AC A0A076FTB4.1
#=GS DNB2_ADES1/22-97 AC Q8JN65.1
#=GS A0A097IW77_9ADEN/108-186 AC A0A097IW77.1
#=GS A0A344X1U9_9ADEN/114-195 AC A0A344X1U9.1
#=GS A0A6N3IR69_9ADEN/34-110 AC A0A6N3IR69.1
#=GS E0YC70_9ADEN/176-254 AC E0YC70.1
#=GS A0A191ULJ2_9ADEN/160-238 AC A0A191ULJ2.1
#=GS X5LKB7_9ADEN/122-199 AC X5LKB7.1
#=GS I3PMN6_9ADEN/186-264 AC I3PMN6.1
#=GS Q9IIH3_ADEF1/35-104 AC Q9IIH3.1
#=GS Q9QM71_9ADEN/83-161 AC Q9QM71.1
#=GS Q6QPD8_9ADEN/164-242 AC Q6QPD8.1
#=GS A0A0M4MQE9_9ADEN/146-225 AC A0A0M4MQE9.1
#=GS A0A1D8QMA5_9ADEN/132-210 AC A0A1D8QMA5.1
#=GS A0A1P8SW87_9ADEN/99-177 AC A0A1P8SW87.1
#=GS Q32UH1_9ADEN/170-247 AC Q32UH1.1
#=GS A6MLY1_9ADEN/163-241 AC A6MLY1.1
#=GS A0A1X9RIX5_9ADEN/74-156 AC A0A1X9RIX5.1
#=GS A0A2H5AI13_9ADEN/117-195 AC A0A2H5AI13.1
#=GS A0A7R7FRK1_ADEB7/22-99 AC A0A7R7FRK1.1
#=GS G9B6K8_9ADEN/31-108 AC G9B6K8.1
#=GS A0A7H0S580_9ADEN/164-245 AC A0A7H0S580.1
#=GS O11422_9ADEN/33-109 AC O11422.1
#=GS A0A1S6ELU3_ADE41/135-213 AC A0A1S6ELU3.1
#=GS A0A0M3TH14_9ADEN/116-194 AC A0A0M3TH14.1
#=GS Q997H7_ADEB4/23-100 AC Q997H7.1
#=GS A0A191ULV4_9ADEN/186-264 AC A0A191ULV4.1
#=GS A0A096ZH38_9ADEN/83-161 AC A0A096ZH38.1
#=GS DNB2_ADE02/184-262 AC P03264.1
#=GS DNB2_ADEG1/90-168 AC Q64759.1
#=GS E7CH44_9ADEN/108-186 AC E7CH44.1
#=GS A0A2H5AIA0_9ADEN/115-193 AC A0A2H5AIA0.1
#=GS A0A516UYP6_9ADEN/184-262 AC A0A516UYP6.1
#=GS H9AAW7_9ADEN/143-221 AC H9AAW7.1
#=GS A0A6M6AAQ9_9ADEN/130-208 AC A0A6M6AAQ9.1
#=GS A0A5H2WX25_9ADEN/111-189 AC A0A5H2WX25.1
#=GS A0A2Z4QJM5_9ADEN/112-193 AC A0A2Z4QJM5.1
#=GS A0A384ZV22_9ADEN/141-219 AC A0A384ZV22.1
#=GS A0A1Y0B6H6_9ADEN/101-181 AC A0A1Y0B6H6.1
#=GS A0A161DYP9_9ADEN/207-288 AC A0A161DYP9.1
#=GS Q5GFA6_ADE04/163-241 AC Q5GFA6.1
#=GS U5NEM3_9ADEN/190-268 AC U5NEM3.1
#=GS A0A191ULM4_9ADEN/158-236 AC A0A191ULM4.1
#=GS A0A6M6ADU3_9ADEN/181-259 AC A0A6M6ADU3.1
#=GS Q83907_ADEO7/23-100 AC Q83907.1
#=GS A0A4Y5G348_9ADEN/147-225 AC A0A4Y5G348.1
#=GS Q2KSB0_9ADEN/169-247 AC Q2KSB0.1
#=GS A0A075FHH3_9ADEN/71-148 AC A0A075FHH3.1
#=GS A0A223PZ84_9ADEN/23-100 AC A0A223PZ84.1
#=GS DNB2_ADE12/139-217 AC P04498.1
#=GS B9A5V2_9ADEN/142-220 AC B9A5V2.1
#=GS F4MI04_9ADEN/29-106 AC F4MI04.1
#=GS A0A1L5LC42_9ADEN/73-151 AC A0A1L5LC42.1
#=GS A0A0K1DBU5_ADEE2/92-172 AC A0A0K1DBU5.1
#=GS DNB2_ADE40/130-208 AC P11806.1
#=GS P87564_ADEC2/114-195 AC P87564.1
#=GS A0A0A7JW83_9ADEN/24-100 AC A0A0A7JW83.1
A0A1B1SKZ2_9ADEN/141-219 ...........s-AQKAMAYLTTVCESLDM.RWQGGTIEPLDA.I.W.T...KVAG...LFMRRRHPEFRLTFSSFDSFYGQLGRFLAAIIYNLAGLEPKF.....
U5NHK2_9ADEN/223-301 ............GAQKAMSFLVTLCERLDM.RWQGATIRPDDA.I.W.T...KLGG...TFVRKRHPEFRLTFSSFDSFHNQIGRFLAAMLYGMSDLEPKF.....
E9KLA8_9ADEN/113-191 ............GAQKAMKFLTTLCDRLDL.RWQGCTIRPDDA.I.W.T...KLGG...TFVRKRHPEFRLTFSSFDSFHNQVGRFVAAMVYGMADLEPKF.....
H9AAQ2_9ADEN/143-221 ........wekg-----MAVMHVLMDKYKIeDRAAFDFMPQSF.EvY.R...KICH...TWLQEDLKYCPLTFSTQKTFSAMMGRFLNKYVLLHAGIE---np...
B2VQF8_9ADEN/142-220 ...........g-MDTMNVLMERYRVDSGL.R-DAYKLMPEQTeI.F.Q...KMCQ...TWMNEEARGMQLTFTTQKAFSTIMGRLLQGYIFSHSGIAHK-n....
Q9YUQ9_9ADEN/8-73 .....qalfacq------------------.--AEANILPTSD.Y.W.A...KLVE...TYVKKNKPDLNLTISSAKSFYHFAGRIVSSFVYNDSGLICNY.....
A0A5F2P0N0_9ADEN/161-239 ...........a-AQKAMGYLTKLCDAFGV.KWQGTSIEPTNA.V.W.A...KLGS...SFMRKVHPDFRLTFSTYESFNCQLGRFVAAMVYNKAELTPKF.....
A0A076FTB4_9ADEN/19-95 ............KIQIALETLHKIGSALKV.DTSTFTFHPDQP.E.C.D...KLFA...AYY-KKQK-HAPTYSSTKTITYVGGRILYTAVCNHAKLVPQ-c....
DNB2_ADES1/22-97 ............KVQAALELLHKFGSAFKV.DTAGFSFHPESP.E.C.D...KIFG...AYL-KNVKHVP-TYSSAKTLTSVGGRILYAATCQYVKLTP--v....
A0A097IW77_9ADEN/108-186 ............GMEFMMVLMEKYKVDKEL.R-STFKFLPDQA.E.VyR...KICQ...AWMNEEYKHNTLTFTSHKSFISMMGRFLMAYIQLYAGVESK-l....
A0A344X1U9_9ADEN/114-195 ...........k-WQSAMEFALKVLNAYQV.DHSKLTLLPDEG.T.L.E...CFKKavqAYITTSKMHVTYTFTNQKTFLHVAGRLLLDFVIKAAELAP--gv...
A0A6N3IR69_9ADEN/34-110 ............KIQKALECLNKIGRHLAI.PTDGFTFHPESN.E.C.E...KLFL...GYFRKNKPTLN--YSTPSSVGAVGGRMLWAAVCRLVGLEPNF.....
E0YC70_9ADEN/176-254 ............GAQRAMGYLSALCDSLDL.RWEGCTINPDDA.I.W.S...KLAG...TYMRRTRPDFRLTFSSYDSFHCQLGRFLAAILYGKAGLEPRF.....
A0A191ULJ2_9ADEN/160-238 ............GAQKAMKILTTICDRLDI.RWQGSTIRPDDA.I.W.T...RIGG...TFVRKRHPEFRLTFSSFDSFHNQVGRFLAAMVYGMAELEPKF.....
X5LKB7_9ADEN/122-199 ..........sp---KAMGLIERICDHLDV.KWQGADAQPDSA.I.W.N...KMAA...TFMRKRRPEYRLTFSSFDSFYSQFGRFLAAMIYADVGLDPKF.....
I3PMN6_9ADEN/186-264 ...........a-AQKAMSMLTQLCDAFNV.KWHGANIQPLNA.V.W.A...KMSS...AFMRRSHPEFRCTFSSFESFHAQMGRFLAAMIYHRAELAPKF.....
Q9IIH3_ADEF1/35-104 asalagmigcpt------------------.---DVNLLPTSE.F.W.A...RISE...NYIKKFRTDFFLTNSTLKSFTHYLGRLLASYVHATAGFEPKF.....
Q9QM71_9ADEN/83-161 ............GAQKAMKILTTICDRLDV.RWQGSTIRPDDA.I.W.T...RIGG...TFVRKRHPEFRLTFSSFDSFHNQVGRFLAAMVYGMAELEPKF.....
Q6QPD8_9ADEN/164-242 ...........g-MEVMTLLMDRYRVESDL.K-SAFQLMPEQG.E.V.Y..rRICH...LYVNEEHRGIPLTFTSNKTLTAMMGRFLQGFVHSHSQIAH--kn...
A0A0M4MQE9_9ADEN/146-225 .....kgmavmh------VLMDKYKIEKEE.R-GAFDFMPQSF.EvY.R...KICH...TWLQEDLKYCPLTFSSQKTFSAMMGRFLNKYVLLHAGIE---npm..
A0A1D8QMA5_9ADEN/132-210 ...........n-AQKAMGMMEKICEFLDI.KWQGADIQPDNA.I.W.N...KIGG...TFIRKKHPEYRPTFSTFDSLYSQFGRFVAAMVYAHSDLDPKF.....
A0A1P8SW87_9ADEN/99-177 ............GAQKAMGMLERLCNFLDM.RWQGATISPEDA.I.W.T...KLGG...TYMRKKHQGFRLTFSSFESFHAQVGRFLAAMVYSASELEPKF.....
Q32UH1_9ADEN/170-247 ............GMEVMCVLMEKYRLDNEL.R-TSFKLMPEQH.EqY.K...RICH...QYVNEEHRGIQLTFTSHKTLSTMMGRFLQGMIHSFSQI----ahh..
A6MLY1_9ADEN/163-241 ...........g-MEIMNMLMERYRVESDL.K-SNFQLMPEQG.E.V.Y..rRICH...LYINEEHRGIPLTFTSNKTLTTMMGRFLQGFVHAHSQI----ahkn.
A0A1X9RIX5_9ADEN/74-156 ..........nw--QQAMEKAVQMMTPLKV.DIKNLTMLADAG.T.Y.EcfkKLAQ...AWINDKKKHVTLSYTTNKTFASMIGRFLFGFVIKSCNL----stpkw
A0A2H5AI13_9ADEN/117-195 ............GMEVMTMLMEKFHVDNDS.R-AAFKFLPDQG.A.VyR...KICQ...TWLNEEHRGLPLTFTNQKTFTELMGRFLMAYMEAYAGVKHK-s....
A0A7R7FRK1_ADEB7/22-99 ............KIQAALEIVAKFGDYVKI.DTSQMKFHPEEG.D.C.E...KLFS...QYL-KKNKVVNLTYSTPKSMSVVGGRMLYSAICNQIDLLPNF.....
G9B6K8_9ADEN/31-108 ..........rh--QKAMQLAASLSAIIGC.Q-VDVCVLPTSD.F.W.S...KLSE...NYIKKNRPDINLTISSAKSFNHFVGRILATFIYNETELDCHF.....
A0A7H0S580_9ADEN/164-245 ..........qw--QACMDLAVAMLVPCKV.DLKDLTMMPDQG.T.L.E...CFKRcaqQWCADNKKHLPLTFSTHKTVYGLIGRFLLDFCIKAAKLNP--vn...
O11422_9ADEN/33-109 ..........lf--QAALEVVYKLGEHLKV.ETKDVTFHPFDT.G.L.E...KLFA...QTL-KKAKY-TPIYSAAKSMNVVGGRLLYGAICNYVGLAPNF.....
A0A1S6ELU3_ADE41/135-213 ...........g-MELMNVLMEKYHVENDE.K-TAFKFLPEQN.A.VyR...KICQ...TWLNEERRGLSLTFTTQKTFTELMGRFLAAYVETYAGVK---hhn..
A0A0M3TH14_9ADEN/116-194 ............GMETMMMLMEKFHVDNDS.R-AAFKFLPDQG.T.VyR...KICQ...TWLNEEHRGLPLTFTNQKTFTELMGRFLMAYMEAYAGVKHK-s....
Q997H7_ADEB4/23-100 ............KIQAALEIVSKFGEYVKV.ETSQMKFHPEEG.D.C.E...KLFS...QYL-KKHKSINLTYSNFKSMAIVGGRMLYSAICKQIGLVPNF.....
A0A191ULV4_9ADEN/186-264 ............GAQKAMKFLTTLCDRLDL.RWQGCTIRPDDA.I.W.T...KLGG...TFVRKRHPEFRLTFSSFDSFHNQVGRFVAAMVYGMADLEPKF.....
A0A096ZH38_9ADEN/83-161 ............GAQKAMKILTTICDRLDI.RWQGSTIRPDDA.I.W.T...RIGG...TFVRKRHPEFRLTFSSFDSFHNQVGRFLAAMVYGMAELEPKF.....
DNB2_ADE02/184-262 ............GMEAARALMDKYHVDNDL.K-ANFKLLPDQ-.-.V.E...ALAAvckTWLNEEHRGLQLTFTSNKTFVTMMGRFLQAYLQSFAEVTYKH.....
DNB2_ADEG1/90-168 ............GAQRAMATVASICEALDL.QWQGASVRPDDS.I.W.T...KMGG...TYVRKKHPEFRLTFSSYDSFNAQVGRFLAAVIYSRAGLEPKF.....
E7CH44_9ADEN/108-186 ..........rw--QRGRDLIEKIFQPLKC.DPSRVTLLPDAE.T.L.A...ALRGacqAWMNTRRQNPQLNFSSRTSFAEQMARFLLQLILQ--------atdel
A0A2H5AIA0_9ADEN/115-193 ............GMEAMMMLMEKFHVDNES.R-GAFKFLPEQG.A.VyR...KICQ...TWLNEEHRGLPLTFTNQKTFTELMGRFLMAYMEAYAGVKHK-s....
A0A516UYP6_9ADEN/184-262 ............GMEAARALMDKYHVDNDL.K-ANFKLLPDQ-.-.V.E...ALAAvckTWLNEEHRGLQLTFTSNKTFVTMMGRFLQAYLQSFAEVTYKH.....
H9AAW7_9ADEN/143-221 ........wekg-----MAVMHVLMDKYKIeDRAAFDFMPQSF.EvY.R...KICH...TWLQEDLKYCPLTFSTQKTFSAMMGRFLNKYVLLHAGIE---np...
A0A6M6AAQ9_9ADEN/130-208 ...........g-MDLMIKLMEKYHVEAEE.K-NGFKFLPEQS.N.VyR...KICQ...TWLNEEHRGLPLTFTSHKTFVEMMGRFLRAYVESYAGVKN--ne...
A0A5H2WX25_9ADEN/111-189 ............GAQKAASYLEQICSKLDI.KMGGNTILARDP.I.W.A...KIAG...VYMRKYHSDFKLTYTTFESYNNQMGRFVAAIVYAKSGLEPKF.....
A0A2Z4QJM5_9ADEN/112-193 ..........aw--QKAMDVAVEILVSLKV.DIKNLTLLPDAG.T.L.E...CFKKgvnAWMLENKIYVPLTYSTQATLVLQIARFFFSFVIRYAGLTC--ew...
A0A384ZV22_9ADEN/141-219 ............GMDAMNVLMERYRVDSGL.R-DAYKLMPEQTeI.F.Q...KMCQ...TWMNEEARGLQLTFTTQKSFSTIMGRLLQGYIFSHSGIAHK-n....
A0A1Y0B6H6_9ADEN/101-181 ..........aw--QRAMEIAVGVCVPLKV.DIKSLTLLPDSG.T.L.E...CFRKaaqSWLNESKVYLPLTFSTQKTVLTIMGRFLYDFVLKAAGL----gvs..
A0A161DYP9_9ADEN/207-288 ..........mw--QQAMDLAVNLCVPLKV.DVKELTLLPDAG.T.L.E...CLRKaahAWIQEKKICTNLTFSTQKSLQTLMARFLLDFIMRSSGLTSN-v....
Q5GFA6_ADE04/163-241 ...........g-MEIMNMLMERYRVESDL.K-SNFQLMPEQG.E.V.Y..rRICH...LYINEEHRGIPLTFTSNKTLTTMMGRFLQGFVHAHSQI----ahkn.
U5NEM3_9ADEN/190-268 ............GAQRAMGIIASLCEAMDL.QWQGATVRPDDS.I.W.T...KMGG...TYIRKRHSDFRLTFSTYDSFNAQVGRFLAAMIYSKAGLEPKF.....
A0A191ULM4_9ADEN/158-236 ............GAQKAMKILTALCDRLDI.RWQGCTIRPDDA.I.W.T...RVGG...TFVRKRHPEFRLTFSSFDSFHNQVGRFLAAMVYGMADLEPKF.....
A0A6M6ADU3_9ADEN/181-259 ............GMEAARALMDKYHVDNDL.K-ANFKLLPDQ-.-.V.E...ALAAvckTWLNEEHRGLQLTFTTNKTFVTMMGRFLQAYLQSFAEVTYKH.....
Q83907_ADEO7/23-100 ............KVQAALEILAKFGECVKV.DTSQMKFHPEEG.D.C.E...KLFA...QYM-KKMKIINLTYSSSKSMATVGGRMLYSAICKQIDLIPNF.....
A0A4Y5G348_9ADEN/147-225 ............GAQKAMSFLVTLCERLDV.RWQGCTVQPHDA.I.W.T...KLGG...TFIRKRHPEFRPTFSSFDSFHGQVGRFLAAMLYGMSELEPKF.....
Q2KSB0_9ADEN/169-247 ...........g-MEVMAVLMERYRLDNDL.R-TSFKLMPEQH.EqY.K...RICH...QYVNEEHRGIPLTFSSMKTLTAMMGRFMQGLVHSYSEIAH--nn...
A0A075FHH3_9ADEN/71-148 ............GMEVMCVLMEKYRLDNEL.R-TSFKLMPEQH.EqY.K...RICH...QYVNEEHRGVQLTFTSHKTLSTMMGRFLQGMIHSFSQI----ahh..
A0A223PZ84_9ADEN/23-100 ............KMQAALEILAKFGDFVKV.DTTQMKFNPEEG.D.C.E...KLFS...QYL-KKMKTINLIYSTTKSMGVVGGRMLYSAICKQVSLNPNF.....
DNB2_ADE12/139-217 ............GMEAMAMLMEKYHVDHDE.R-ATFRFLPDQG.S.VyK...KICT...TWLNEEKRGLQLTFSSQKTFQELMGRFLQGYMQAYAGVQQN-s....
B9A5V2_9ADEN/142-220 ...........g-MDTMNVLMERYRVDSGL.R-DAYKLMPEQTeI.F.Q...KMCQ...TWMNEEARGMQLTFTTQKSFSTIMGRLLQGYIFSHSGIAHK-n....
F4MI04_9ADEN/29-106 ..........rh--QKAMQLAASLSAIIGC.Q-VDVCVLPTSD.F.W.H...KLVE...NFIKKNRPDLTLTISSQKSFYHFVGRLLASYIYAESDLDCHF.....
A0A1L5LC42_9ADEN/73-151 ...........n-AQKAMGMMEKICEFLDI.KWQGADIQPDNA.I.W.N...KIGG...TFIRKKHPEYRPTFSTFDSLYSQFGRFVAAMVYAHSDLDPKF.....
A0A0K1DBU5_ADEE2/92-172 ..........dw--QRGMEVISKFSIPLKV.DTSDLTFLPDVA.S.V.EcfkKLCQ...AWLNEKRRHVPLTFTSHKTFVAVMARFLNSFVINFANLA---ch...
DNB2_ADE40/130-208 ...........g-MDLMIKLMEKYHVEAEE.K-NGFKFLPEQS.N.VyR...KICQ...TWLNEEHRGLPLTFTSHKTFVEMMGRFLRAYVESYAGVKN--ne...
P87564_ADEC2/114-195 ...........k-WQSAMELALKVLTAYQV.DHSKLTLLPDEG.T.L.E...CFKKavqAYITTSKTHVTYTFTNQKTFLHVAGRLLLDFVIKAAELAP--gv...
A0A0A7JW83_9ADEN/24-100 ...........h-LQEALDICAKFADHYKI.VLSNFSFSPEDT.S.L.E...KIVG...AAMRK--TKYNPLYSNIRSMHKVGARMLYAAISQAANLEPKF.....
#=GC seq_cons .............hptAhtlhp+hpsphcl.c.sshslhP-pu.h.h.p...Klst...salpcc+pthpLTFSotKoFsshhGRFLtuhlhshusLpsp......
//
