#=GF ID   Viral_NABP
#=GF AC   PF05515.15
#=GF DE   Viral nucleic acid binding 
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF SE   Pfam-B_6916 (release 8.0)
#=GF GA   23.00 23.00;
#=GF TC   23.20 23.10;
#=GF NC   22.90 22.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0140
#=GF DR   INTERPRO; IPR008891;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family is common to ssRNA positive-strand viruses and are
#=GF CC   commonly described as nucleic acid binding  proteins (NABP).
#=GF SQ   31
#=GS Q67702_9VIRU/1-124       AC Q67702.1
#=GS A0A1W7HH34_9VIRU/7-125   AC A0A1W7HH34.1
#=GS O09503_9VIRU/1-124       AC O09503.1
#=GS VNBP_ICRSV/1-222         AC Q9QEE6.1
#=GS A7TZS2_9VIRU/8-135       AC A7TZS2.1
#=GS A0A2P5BWV5_PARAD/1-70    AC A0A2P5BWV5.1
#=GS A8II70_9VIRU/6-126       AC A8II70.1
#=GS VNBP_SHVX/1-124          AC Q04580.1
#=GS Q67694_9VIRU/4-124       AC Q67694.1
#=GS A0A4Q5RX99_9SPHN/1-54    AC A0A4Q5RX99.1
#=GS G9CHA7_9VIRU/2-127       AC G9CHA7.1
#=GS V5V1R4_9VIRU/22-220      AC V5V1R4.1
#=GS Q96810_9VIRU/1-77        AC Q96810.1
#=GS A0A5C7IBL4_9ROSI/6-97    AC A0A5C7IBL4.1
#=GS A0A2L0V1P5_9VIRU/14-133  AC A0A2L0V1P5.1
#=GS A0A1V0JB96_9VIRU/1-74    AC A0A1V0JB96.1
#=GS A0A240G1F6_9VIRU/1-73    AC A0A240G1F6.1
#=GS A0A0C5CI11_9VIRU/1-222   AC A0A0C5CI11.1
#=GS C0L9F3_9VIRU/1-112       AC C0L9F3.1
#=GS I2E5K9_9VIRU/2-122       AC I2E5K9.1
#=GS A0A2H4N952_9VIRU/1-80    AC A0A2H4N952.1
#=GS B3Y535_9VIRU/1-78        AC B3Y535.1
#=GS A0A0A0YT54_9VIRU/1-124   AC A0A0A0YT54.1
#=GS A0A5C7HJ54_9ROSI/24-135  AC A0A5C7HJ54.1
#=GS A0A386QX45_9VIRU/1-87    AC A0A386QX45.1
#=GS A0A8K0MRF9_9ROSA/77-180  AC A0A8K0MRF9.1
#=GS A0AAR1_9VIRU/2-122       AC A0AAR1.1
#=GS Q67700_9VIRU/1-124       AC Q67700.1
#=GS VSR_GVAIS/1-73           AC Q67708.2
#=GS A0A2K8JK75_9VIRU/2-79    AC A0A2K8JK75.1
#=GS A0A650F265_9VIRU/1-222   AC A0A650F265.1
Q67702_9VIRU/1-124                  ...................................................mhphdf---------------------------------------------------------------------------------------------------------NLLCCLHFSQPPLPKDLKEFIF...SR.CVDC..CKL..VRRTNQNK..PF.QGVSKCAKRRRAKRYNRCFDCGA--FLVDGHRCK--VFVSKAHSD..VLAVIHEGPAKLYAERSYRPNSDAAQLIENDILYIR................
A0A1W7HH34_9VIRU/7-125              .................................................qdvgwltv--------------------------------------------------------------------------------------------------------------LLARRMGLDYDISRSIA...KY.VVNY..NNG..IRTYESY-..-V.NGSSKSAKKRRAKRFQVCVKCARPHCT-NGINCVPN---TSSQIN..VSNLIEMGVTRYLTESTPRKGTHVYDHVKSEL----glik............
O09503_9VIRU/1-124                  ........................................................m----------------------------------------------------------------------------------------------------HSYDFNLLACLQFSKPTLPSDVRIIIY...NL.TFDS..RKL..GRKAQQNK..PF.TGTSKCAARRRAKRYGRCFDCGA--LLEANHVCK--LFTTRSNSD..CLSVIHEGPAKLYAERSFRKSSFAEQLIRNDLQLM-k...............
VNBP_ICRSV/1-222                    .........................................................MEPHDQSGSTTRQLDEIRDRRGSQIRSVRLLPWRPFTRFPVCPSGTSPYSRGTHSQPSYVRCQNCERARQWFRAHDGPRCLHQRPDYSRLQAPPDPFQHLNSFEPILLAALSVLRP-LPRDIQITII...SC.ACDY..FHS..VRCASSR-..-Y.LGSSRSAVKRRAARLNYCYKCGHPLYLNKPHTCRPGRLCSASISE..RLALLREGPIRSLTENPI--NARAAHFLAHELLDPR................
A7TZS2_9VIRU/8-135                  ........................dmedleftlcvckiklselglptsvchyildpl-------------------------------------------------------------------------------------------------------------------------------...VA.AVRT..CLR..QEKQRQNA..PF.NGVSRSSAKRRAKYLDRCIKCGK---F--SHTGPCPRNQTISNAE..IVHLIYNGTTRFLAEKPQYRRGSFAQMLADRLLE--rs..............
A0A2P5BWV5_PARAD/1-70               ......................................................mpg-------------------------------------------------------------------------------------------------------------------------------...--.----..---..--------..--.HGKSSFAKKRRAKRMKVCHKCAR---WTCNTKCRSLGMASTNRED..KINFIKDGMSKR------------------------slddllstlemhp...
A8II70_9VIRU/6-126                  ...................................nsflcglvkiglcnrgvphgia-----------------------------------------------------------------------------------------------------------------------SDLVNQIV...SE.FEEG..AR-..-RCRFLKE..FH.NGTSRSAAKRRARYLGVCVKCGK---LLHEGACP--RGQTKAQWE..RYMVVKEGSISFLSENSK------------------ifrpgskaddacsall
VNBP_SHVX/1-124                     ...................................................mhphdl---------------------------------------------------------------------------------------------------------NLLCCLHFSKPSLPNDLKTLLF...RA.CETS..CKL..NRRLLDNK..PF.QGTSKCAKRRRAKRYNRCFDCGA--YLYDDHVCK--RFTSRSNSD..CLSVIHQGPAKLYAEGAYRANSDAEQLIMNDMLLIK................
Q67694_9VIRU/4-124                  .....................................................qdfn----------------------------------------------------------------------------------------------------------ILCCLHFAKPFIPQDLKAHLF...FT.CVNE..CKL..VRIARENK..PF.LGTSKCAQRRRAKRYNRCFECGA--YLLDNHKCR--IFVSRAQSD..VLAVIHEGPAKLHAERTYRPNSDAALLIESDLQYI-k...............
A0A4Q5RX99_9SPHN/1-54               ........................................................m---------------DLRARRGSVIRSVRLGRWRDLAAFLSK--AARARSRTNHSPPKNTRY-----------------------------------------------------------------...--.----..---..--------..--.---------------------------------------------..------------------------------------lylpqaqr........
G9CHA7_9VIRU/2-127                  .............................................dpttqisvslll-----------------------------------------------------------------------------------------------------------VVKNKLCDSGVPTDVAIGII...EP.IIKE..VRK..LQRQEEQRllRF.NGCSRSAIKRRAKYLNKCHKCGK-----QSHYGLCSRNQTISNME..VEFLIRCGTIRYLTENPQRR----------------kdsiyssdyeklv...
V5V1R4_9VIRU/22-220                 ssdsppmqkwqprtptdmstctaqargpqiilhlplrfirvdsrgpvsniwklhnla--------------------------------------------------------------------------------LHRAPRVANAKSTTLNTRTYLMAHLNFLACLYFTKPSLPPELIQAIY...KL.GSGH..CTE..WNKSTQQ-..PWgCGTSKSAIKRRIKRYNKCPNCGR---ERHPGRCK--WSSSHAQQD..IQDLLRIGAIRLQAERPIRPNSNLEQIVEHEMA---isr.............
Q96810_9VIRU/1-77                   .......................................................ms-------------------------------------------------------------------------------------------------------------------------------...--.----..---..--------..KY.LGESRSAAKRRATRYGRCYCCGR-------VECNKGERTTRSQDE..VKECIRTPAIRFLTENGGRYVTNAISLALGDM----eri.............
A0A5C7IBL4_9ROSI/6-97               ..............................gipmelhwlieakvrlagefsdsfiay-------------------------------------------------------------------------------------------------------------------------------...--.----..---..-------M..PG.LGKSSFAKKRRAKRLHACYKCAC---TTCNTHCRSLGMVSVNRED..KIQFIKDGLSKES-----------------------ldniflt.........
A0A2L0V1P5_9VIRU/14-133             ........................................nwvalnkaniflslins---------------------------------------------------------------------------------------------------------------------FGRDIGFKIFmmyKCkCEKE..YKD..QIRYQNMV..NYgQGKSKSAMKRRAIKVEHCYKCGK--FEHDGH-CN--KNQTNSNHE..YLEMFRCGPIKLKAERALRKNSM-------------vqmsce..........
A0A1V0JB96_9VIRU/1-74               .......................................................mg-------------------------------------------------------------------------------------------------------------------------------...--.----..---..-------E..PF.LGNSKSSAKRRARRHDRCLKCGA---ISHLSKCK--QLPSASQME..CQSYLVSGPNRFKTERPHWSNVD-------------wlclrd..........
A0A240G1F6_9VIRU/1-73               ..................................................mddpsfl-------------------------------------------------------------------------------------------------------------------------------...--.----..---..--------..--.AGRSSYAKKRRAKRMNVC-KCGA--IMHNNPDCR-KKAISGHKID..RLEFVKRGRVTLSGETPV------------------yrtwvrw.........
A0A0C5CI11_9VIRU/1-222              .........................................................MEPHDQGGPASGQLDEIRGRREREIRGIRLLPWYPLARFPVCAPRETPYFRGEDRKSGHVRCENCQRSRKWHGPHDGPRCLHQRKDYPALRPPPDPFQHLTTFEPILLACLQALKP-LPPEIQIAII...SC.VCDF..FNF..LRCASSK-..-Y.QGTSRSAVKRRAARLNYCYKCGHPLYLNKPHPCRPGQLCSASISE..RLCLLHTGPIRFLTENPV--SARAAHFLAHELLDPR................
C0L9F3_9VIRU/1-112                  .....................................................mddv----------------------------------------------------------------------------------------------------------CISIVVCLRGLIPTDLCVNIA...KR.VAAS..KKI..ARRLPLDA..LG.RGTSKSAVKRRCAKLGLCSSCGR---VLHYGLCN--KNQTYSQWE..LLASLRGEPIRLKAEKSLRLNSAAE-----------gcn.............
I2E5K9_9VIRU/2-122                  ................................................ktlcykdtl----------------------------------------------------------------------------------------------------------NTVALCLYRLCVPLDIIYLIQ...GK.VYTN..TRLyeVARQSSIT..PF.SGTSRSAIKRRAMRENRCYKCGKDF---HKYKCR---SNTTSQQE..FVEYFKEGPTRFDTEKAR-TNS--------------miilyherql......
A0A2H4N952_9VIRU/1-80               ......................................................mqr-------------------------------------------------------------------------------------------------------------------------------...--.----..---..--------..--.LGESKSAAKRRAKRYGVCYKCAK-----SVCVCEKNRASSFDRTDwkCYNAIRMPATRYLIESRGTYLHKASQLALSD-----leai............
B3Y535_9VIRU/1-78                   .......................................................md-------------------------------------------------------------------------------------------------------------------------------...--.----..---..------N-..KY.LGESRSAAKRRAKRYGRCYCCGR-------IECNGDVRTTKSQDQ..VKQAIRTPAIRFLTENEGNYINAAMNLALTDMV---kl..............
A0A0A0YT54_9VIRU/1-124              ....................................................mhpyd--------------------------------------------------------------------------------------------------------FNFLACLQFAQPNLPSDIRTNIY...IL.SSVS..RKL..GRKSQQNK..PF.TGTSKCAARRRAKRYNRCFDCGA--SLNTDHVCK--LFTTRASTD..CLHVIHEGPAKLYAERNFRKSSFAEQLILDDLELM-k...............
A0A5C7HJ54_9ROSI/24-135             ................yearferlrmlmhkgipvelrwlieakvrlagefldsfiay-------------------------------------------------------------------------------------------------------------------------------...--.----..---..-------M..PD.LGKSSFAKKRRAKRLNACYKCDR--TTCNTRYCSLG-MVSINRED..KIQFIKDGLSK-------------------------dsgkdvefeeaaknl.
A0A386QX45_9VIRU/1-87               .................................................msrskevr-------------------------------------------------------------------------------------------------------------------------------...--.----..-KI..DRQKEQRV..KFgEGTSRSSAKRRAKWLKRCVKCGR-----SEHIGECKKIGQRCPDE..FLTIIRAGPNRSLTEKLL------------------nprglafd........
A0A8K0MRF9_9ROSA/77-180             ........................hvcarlrllmdkgmlgdirwiieakvrlagess-------------------------------------------------------------------------------------------------------------------------------...--.----..---..-DSFTSYM..PG.MGKSSYSKRRRAKRMQVCHKCGR--WTCNKRCCSL-GMVSINRED..KINFIKDGLSK-------------------------eslddillt.......
A0AAR1_9VIRU/2-122                  ...............................................rtlcykdtln-----------------------------------------------------------------------------------------------------------TIALCLYRLCVPLDIIYVIQ...GM.VYTNtrMFE..VARQSSVA..PF.SGTSKSAIKRRAMRENRCYKCGR---ITIKNKCR---SNTTSQQE..FVEYFKEGPTRFNTEKAR-TNS--------------miilyherql......
Q67700_9VIRU/1-124                  ....................................................mhpyn--------------------------------------------------------------------------------------------------------LNLLCCLHFSKPTLPLELRLYIY...NL.AAPN..LLL..GRKMLQNK..PF.QGTSKCAARRRAKRYNRCFDCGG--YLLNNHVCK--QFPTRASTS..CFNVIHEGPAKLYAEGSFRRDSFAEQLILNDLELM-k...............
VSR_GVAIS/1-73                      ..................................................mddpsfl-------------------------------------------------------------------------------------------------------------------------------...--.----..---..--------..--.TGRSTFAKRRRARRMNVC-KCGA--IMHNNKDCKSSSI-SSHKLD..RLRFVKEGRVALTGETPV------------------yrtwvkw.........
A0A2K8JK75_9VIRU/2-79               ....................................................sglln-------------------------------------------------------------------------------------------------------------------------------...--.----..---..-------S..RF.LGESRSAAKRRAKRYGRCFCCGR---LDCNNNSR----TTISQDQ..VKLAIRTPATRFLTENGGQYVNAA------------iqlaldea........
A0A650F265_9VIRU/1-222              .........................................................MEPHDQSGPTTRELDEIRGGRERQIRGLRLLPWSPFTRFPVCPPGTTPHSCGTHSQPSNVRCENCQRARKWFGTRDGPRCIHQRPDYPNLKPKQDPFCHLGTFEPILTACLQVLKT-LPRDIQITII...SC.VCDV..FIS..FRCASNR-..-H.LGSSRSAVKRRASRLNYCYKCGHPLYLNNNHDCRPGRLCSASISE..RMALLREGPIRSLTENPI--HARAAHYLAHELLDPR................
#=GC seq_cons                       ........................................................h.................................................................................................................................................tp........a.tGsS+sAtKRRAKRhstCaKCG+...h.psptCc..thsotupp-..hlphl+pGss+hhsEpsh...s..............h...............
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