GenomeNet

Database: Pfam
Entry: Ybfg_C
LinkDB: Ybfg_C
Original site: Ybfg_C 
#=GF ID   Ybfg_C
#=GF AC   PF21015.1
#=GF DE   Ybfg C-terminal
#=GF AU   Chuguransky S;0000-0002-0520-0736
#=GF SE   Manual
#=GF GA   27.00 27.00;
#=GF TC   41.70 40.40;
#=GF NC   26.30 25.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   24235140
#=GF RT   Bacteriocin protein BacL1 of Enterococcus faecalis is a
#=GF RT   peptidoglycan D-isoglutamyl-L-lysine endopeptidase.
#=GF RA   Kurushima J, Hayashi I, Sugai M, Tomita H;
#=GF RL   J Biol Chem. 2013;288:36915-36925.
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This is the presumed C-terminal domain found the uncharacterized
#=GF CC   protein YbfG from Bacillus subtilis. This domain may adopt an
#=GF CC   alpha/beta structure. YbfG has a peptidoglycan-binding domain at
#=GF CC   the N-terminal (Pfam:PF01471) and a central catalytic glycosyl
#=GF CC   hydrolase family 25 (GH25) domain (Pfam:PF08924). YbfG has a
#=GF CC   significant degree of homology to BacA [1] from E. faecalis,
#=GF CC   which together with BacL1, show cell wall lytic activity [1].
#=GF SQ   7
#=GS A0A0U1QLN6_9BACL/539-663  AC A0A0U1QLN6.1
#=GS A0A099W730_9LIST/531-684  AC A0A099W730.1
#=GS YBFG_BACSU/523-670        AC O31447.1
#=GS A0A0L0QL76_VIRPA/526-676  AC A0A0L0QL76.1
#=GS A0A1U7ED72_9LACT/1-137    AC A0A1U7ED72.1
#=GS A0A369BGL5_9BACL/527-670  AC A0A369BGL5.1
#=GS A0A4Y1Z781_9BACL/23-151   AC A0A4Y1Z781.1
A0A0U1QLN6_9BACL/539-663             ....pfeistgll-----------.---.------------.-----K.VTITFSESLEPTNPVD---.HVLTIKNGKVQNPFTEGLTALTQKVEVPNSEQYQSTMDGIASATNSGYIvnKVSYDTPANTVSYTISTSLDSIPVTETYQTVLSVSITYTID--.-----yndpsvp
A0A099W730_9LIST/531-684             .............VLYGNSSLAAL.VDDkVTFELELEKTNS.RVISPN.LTVIFKASAKLTDPADGG-.TTVSVKDGKVNASFEKELANWTGSLSTEEAGDTKKIIADLAAKVVVGDI..TVKWSPAKDFITVSITANVPEIEVTDKYKTSASMSISLIIDNKnKDL--dsqwdai
YBFG_BACSU/523-670                   .............ILSTIPALENL.TSL.ANAMFEFDTTET.IFTSPE.LDIILSTSLLATIPSEGSP.NTITITNGKPGAYITGLLGDTQTSLTASQIDSYQNLLNSLSLSVRNGYL..EVYVNPTAESLNIQIKIYTPDIPVGDNVTTGLTTTITFKIKTY.KGVPV.......
A0A0L0QL76_VIRPA/526-676             .........igkn----IPGLQEFnPEL.FATNINFSSTHR.AFSIGNiVTVDVEFSEQLNPPTEGGTtTTLQITPDGVSGSLESLLGENIAQFTQNRLGFYEDFIDNMATSIGAGAI..QMTLKGTGTSAELRVTAFKEEIPVDGGGNVQLAVTVIFTVD--.-----mdvmtpv
A0A1U7ED72_9LACT/1-137               .........mfem-----------.---.VSERIELDGEEReLFNSSL.LKVTFSASKDITIGDDEGLgNIVHVSNGEPFGAIETTIEN-TFGLSSQITLDSKGITNTLASNMGNGII..ETSVSVQSGEIKYTYRIIVADIELGSGIKTSAAILFNVY----.-----lknsnfp
A0A369BGL5_9BACL/527-670             .............TISEFPVLKDI.PSL.YSTNFVFNTTER.VYSSFL.LDIDVSTKTEHEFG-DNDM.HKITITNGKLGVSAEEILGESTVKLSAEQISDFTKFLDNVALSVENGIM..AISMNPQGNKLVLEIKLYTKEISVADGTKSKLEISV---IYTF.KHVPT.......
A0A4Y1Z781_9BACL/23-151              qydvpfeistgll-----------.---.------------.-----K.VTITLSESLEPTNPVD---.HVLTIKNGKVQNPFTEGLTALTQKVEVPNSEQYQSTMDGIASATNSGYIvnKVSYDTPANTVSYTISTSLDSIPVTETYQTVLSVSITYTID--.-----yndpsvp
#=GC seq_cons                        .............................hs..h.hptppp.hh...p.lslshStShchT.PsDts..psloIpNGKltsshpphLss.TtplospphtpapshhsslAsusssGhI..plohsssusplshpIph.hs-IsVs-shpTsLulolshhIc.........p..s..
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