#=GF ID   Zea_mays_MuDR
#=GF AC   PF05928.15
#=GF DE   Zea mays MURB-like protein (MuDR)
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_3145 (release 9.0)
#=GF GA   20.80 20.80;
#=GF TC   20.90 20.90;
#=GF NC   20.50 20.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   11251096
#=GF RT   Expression and post-transcriptional regulation of maize
#=GF RT   transposable element MuDR and its derivatives. 
#=GF RA   Rudenko GN, Walbot V; 
#=GF RL   Plant Cell 2001;13:553-570.
#=GF DR   INTERPRO; IPR009227;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of several Zea mays specific MURB-like
#=GF CC   proteins. The transposition of Mu elements underlying Mutator
#=GF CC   activity in maize requires a transcriptionally active MuDR
#=GF CC   element. Despite variation in MuDR copy number and RNA levels in
#=GF CC   Mutator lines, transposition events are consistently late in
#=GF CC   plant development, and Mu excision frequencies are similar [1].
#=GF SQ   3
#=GS A0A1X7V014_AMPQE/37-151   AC A0A1X7V014.1
#=GS A0A437BHP9_CHISP/37-184   AC A0A437BHP9.1
#=GS A0A804MXF4_MAIZE/191-357  AC A0A804MXF4.1
A0A1X7V014_AMPQE/37-151              ...............................vtlknmt----------------------------------------KRFNDIIAEQDEQLRISAKILTEDMKYFTQIAKKKVKTIQEKRRQKQQLPSTTNLIQCVNQGAGSEIlTHYKEKWNHIHSDTNASSALCDEMYQ-------------.-.------------------------------------------------------------slqklygsmsnshh.............
A0A437BHP9_CHISP/37-184              kcklfmvvessklpnpksgivevqkpngnwykcidsgg-----------------------------------------------------------------KYHCKFCELVYNSIQTLRVHTKMKHSSEALAITAAQ---SNI.KKSKKNLCHICKEMFKSLNHLEEHLKNSHQMY--KENKC.C.HLCHSV------------------------------------------------------fdnekvlsdhmlsahnvqlrkmhicnt
A0A804MXF4_MAIZE/191-357             ......................ysvaqysspfriigrv----------------------------------------------------------NEEHVDLKYHISVKNSLRYAIQEMRRQSSLLRTINGLCCSIPEVEGGKV.GKLAGHLKEVCKGLEKTSSICQEDLENKCPGWDLHNPPSdVeDNSHPSDVEDAMDGYVSEDPELWQMVFDDLQWEENKVAVSLAEHCRIMGYDYDQMFDRT-i..........................
#=GC seq_cons                        ......................hphsphs..hsIcuts..........................................................p..p.DhKYHsplscplhpoIQEhRRQophL+SosuLspolsQstGScI.sKhKc+LsHICK-hpKSSulC-EcLcNpp.ha..+ps.s.s.c.sHss......................................................h.pchhhS.p..pt.............
//